Wall clock time and date at job start Tue Mar 31 2020 20:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47438 * 2 1 4 4 C 1.53000 * 109.47479 * 119.99977 * 2 1 3 5 5 N 1.46493 * 109.47637 * 174.99628 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 S 1.81005 * 109.47244 * 179.97438 * 9 7 5 11 11 C 1.76192 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99747 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00171 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47396 * 59.99622 * 15 13 11 17 17 H 1.48504 * 109.46972 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46804 * 299.99684 * 15 13 11 19 19 N 1.46497 * 109.47104 * 239.99901 * 2 1 3 20 20 C 1.34786 * 119.99696 * 85.00076 * 19 2 1 21 21 O 1.21549 * 119.99917 * 0.02562 * 20 19 2 22 22 C 1.47834 * 119.99689 * 180.02562 * 20 19 2 23 23 C 1.39955 * 120.93941 * 359.72120 * 22 20 19 24 24 N 1.32146 * 118.92179 * 179.71840 * 23 22 20 25 25 C 1.31871 * 120.96415 * 0.57002 * 24 23 22 26 26 N 1.31869 * 122.09838 * 359.69897 * 25 24 23 27 27 C 1.32146 * 120.96669 * 0.02562 * 26 25 24 28 28 H 1.09006 * 109.47114 * 300.00223 * 1 2 3 29 29 H 1.09001 * 109.47265 * 59.99254 * 1 2 3 30 30 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46747 * 54.99457 * 4 2 1 32 32 H 1.08996 * 109.47074 * 295.00183 * 4 2 1 33 33 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 34 34 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 35 35 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 36 36 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 37 37 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 38 38 H 0.97000 * 119.99868 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00033 * 265.00198 * 19 2 1 40 40 H 1.07999 * 120.53950 * 359.97438 * 23 22 20 41 41 H 1.08001 * 118.94761 * 179.72916 * 25 24 23 42 42 H 1.07998 * 120.53804 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9948 0.5666 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1165 2.2322 9 6 5.7695 0.0380 1.6607 10 16 6.5111 1.4929 2.4415 11 6 8.2193 1.1096 2.2425 12 1 8.5136 0.1931 1.7529 13 6 9.1866 1.9855 2.7151 14 7 8.8279 3.1028 3.3115 15 14 10.9977 1.5795 2.5035 16 1 11.3096 1.4465 1.0578 17 1 11.8208 2.6682 3.0889 18 1 11.3025 0.3013 3.1953 19 7 2.0183 -0.6906 -1.1961 20 6 2.1470 -0.0182 -2.3572 21 8 1.8583 1.1613 -2.4116 22 6 2.6392 -0.7152 -3.5643 23 6 2.9827 -2.0713 -3.5224 24 7 3.4130 -2.6560 -4.6266 25 6 3.5310 -1.9781 -5.7516 26 7 3.2239 -0.6984 -5.8340 27 6 2.7808 -0.0362 -4.7798 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1369 33 1 4.2782 -2.7699 1.3176 34 1 3.4777 -2.3760 -0.2226 35 1 5.0871 -1.7080 0.1403 36 1 6.0869 -0.8603 2.1901 37 1 6.0917 -0.0198 0.6210 38 1 9.5040 3.7148 3.6421 39 1 2.2489 -1.6318 -1.1526 40 1 2.8935 -2.6319 -2.6036 41 1 3.8902 -2.4875 -6.6336 42 1 2.5309 1.0118 -4.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337029400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:16 Heat of formation + Delta-G solvation = -40.347989 kcal Electronic energy + Delta-G solvation = -26551.464538 eV Core-core repulsion = 22657.443571 eV Total energy + Delta-G solvation = -3894.020967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33068 -41.18419 -40.31753 -37.64607 -35.71178 -34.93680 -34.60167 -33.88654 -32.10204 -30.85868 -28.24438 -27.71670 -26.73393 -26.20860 -25.65751 -23.07058 -21.90502 -20.81215 -19.62765 -19.29486 -18.76958 -18.34530 -18.03330 -17.34751 -16.95481 -16.88779 -16.68904 -16.42120 -15.90387 -15.73144 -15.35658 -14.78384 -14.75141 -14.65735 -14.53755 -14.47940 -13.87140 -13.73224 -13.55013 -13.27288 -13.17988 -12.95399 -12.89295 -12.87157 -12.78997 -12.61109 -12.12399 -12.04542 -11.74993 -11.16724 -11.14415 -10.95455 -10.91646 -10.45018 -10.32659 -10.28478 -9.67247 -8.69212 -8.35998 -6.14695 -0.70401 -0.11755 1.24310 1.42404 1.44557 1.53875 1.56104 1.67282 1.85790 2.12306 2.26349 2.69086 2.97499 2.98101 3.05735 3.24859 3.28399 3.51965 3.63724 3.71196 3.84248 4.06327 4.16102 4.23009 4.25563 4.33356 4.43796 4.55468 4.57846 4.62809 4.67913 4.81447 4.91607 4.99573 5.15089 5.23770 5.33714 5.39253 5.55557 5.69816 6.17354 6.21801 6.30848 6.85626 7.01886 7.04966 7.13626 8.73035 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003033 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.169025 B = 9228.475892 C =10764.090921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 H 0.048 0.952 4 C 0.110 3.890 5 N -0.609 5.609 6 C 0.067 3.933 7 C 0.529 3.471 8 O -0.562 6.562 9 C -0.123 4.123 10 S -0.156 6.156 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.259 1.259 19 N -0.697 5.697 20 C 0.568 3.432 21 O -0.571 6.571 22 C -0.250 4.250 23 C 0.196 3.804 24 N -0.528 5.528 25 C 0.314 3.686 26 N -0.538 5.538 27 C 0.198 3.802 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.206 0.794 41 H 0.233 0.767 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 -20.055 -14.189 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 H 0.066 0.934 4 C -0.012 4.012 5 N -0.343 5.343 6 C -0.074 4.074 7 C 0.317 3.683 8 O -0.441 6.441 9 C -0.274 4.274 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.183 1.183 19 N -0.351 5.351 20 C 0.354 3.646 21 O -0.451 6.451 22 C -0.258 4.258 23 C 0.028 3.972 24 N -0.241 5.241 25 C 0.029 3.971 26 N -0.252 5.252 27 C 0.032 3.968 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.223 0.777 41 H 0.249 0.751 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.425 -18.161 -14.198 28.305 hybrid contribution 1.496 -0.324 0.192 1.542 sum -14.930 -18.485 -14.006 27.582 Atomic orbital electron populations 1.22040 0.92357 1.04085 1.02556 1.21385 0.95700 0.96533 0.84085 0.93392 1.21967 0.78617 1.03818 0.96829 1.47782 1.06465 1.21455 1.58551 1.22221 0.99328 0.86807 0.99091 1.20130 0.88572 0.82329 0.77280 1.90694 1.75078 1.32707 1.45574 1.23368 0.94788 1.04077 1.05217 1.85621 1.03927 1.26664 1.76686 1.23153 0.91209 1.10067 1.44997 0.89907 1.26137 1.05118 0.94069 0.93806 1.70181 1.36181 1.11095 1.37343 0.85015 0.75590 0.78378 0.79091 1.18798 1.20421 1.18343 1.45841 1.66502 1.14313 1.08465 1.18049 0.77164 0.85916 0.83447 1.90820 1.51659 1.17252 1.85377 1.21685 1.09335 0.98189 0.96553 1.23961 0.85498 0.89624 0.98092 1.68607 1.15364 1.39909 1.00196 1.25989 0.87759 0.86738 0.96644 1.68650 1.13732 1.11180 1.31600 1.23596 0.85799 1.00854 0.86568 0.90699 0.93538 0.88968 0.84631 0.89693 0.89810 0.88239 0.91215 0.87143 0.88108 0.91994 0.74792 0.77709 0.75060 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.48 71.98 0.68 -1.53 16 2 C 0.13 2.47 2.88 44.99 0.13 2.60 16 3 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 4 C 0.11 1.84 5.05 86.38 0.44 2.27 16 5 N -0.61 -13.23 2.73 -846.78 -2.31 -15.54 16 6 C 0.07 0.79 9.87 127.77 1.26 2.05 16 7 C 0.53 18.95 7.69 87.65 0.67 19.62 16 8 O -0.56 -25.70 15.44 -3.04 -0.05 -25.74 16 9 C -0.12 -4.84 4.71 71.23 0.34 -4.50 16 10 S -0.16 -8.74 20.57 -56.49 -1.16 -9.91 16 11 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 12 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 13 C 0.01 0.77 5.49 84.86 0.47 1.24 16 14 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 15 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 N -0.70 -10.39 4.49 -445.42 -2.00 -12.39 16 20 C 0.57 12.22 7.75 86.78 0.67 12.90 16 21 O -0.57 -18.04 16.11 -3.87 -0.06 -18.11 16 22 C -0.25 -4.27 5.91 -19.91 -0.12 -4.39 16 23 C 0.20 2.20 10.81 85.06 0.92 3.12 16 24 N -0.53 -7.01 10.42 -198.97 -2.07 -9.08 16 25 C 0.31 4.21 12.27 180.84 2.22 6.43 16 26 N -0.54 -9.73 10.42 -198.98 -2.07 -11.81 16 27 C 0.20 3.85 10.88 85.06 0.93 4.77 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.14 0.86 8.07 -2.39 -0.02 0.84 16 32 H 0.08 1.83 7.42 -2.39 -0.02 1.81 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.30 5.64 -2.39 -0.01 0.28 16 35 H 0.07 1.00 6.44 -2.38 -0.02 0.98 16 36 H 0.11 3.83 8.11 -2.40 -0.02 3.81 16 37 H 0.10 3.66 7.40 -2.39 -0.02 3.64 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.41 2.65 4.28 -92.71 -0.40 2.25 16 40 H 0.21 0.46 6.54 -2.91 -0.02 0.44 16 41 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.17 3.47 7.74 -2.91 -0.02 3.45 16 Total: -1.00 -90.28 372.53 2.50 -87.78 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.67 Total: 11.45 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 9.25 Total: 13.94 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -8.17 Total: -105.04 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.11 Total: -43.85 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.91 kcal Total: -90.28 2.50 -87.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337029400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.428 kcal (2) G-P(sol) polarization free energy of solvation -90.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds