Wall clock time and date at job start Tue Mar 31 2020 20:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46933 * 2 1 4 4 O 1.42899 * 109.47514 * 240.00104 * 2 1 3 5 5 C 1.53000 * 109.47278 * 119.99653 * 2 1 3 6 6 H 1.09010 * 109.46978 * 64.34502 * 5 2 1 7 7 N 1.46498 * 109.47424 * 304.34565 * 5 2 1 8 8 C 1.34775 * 119.99987 * 85.27316 * 7 5 2 9 9 O 1.21277 * 119.99917 * 359.72155 * 8 7 5 10 10 C 1.50697 * 119.99731 * 179.72884 * 8 7 5 11 11 C 1.53009 * 117.49499 * 248.74081 * 10 8 7 12 12 C 1.53003 * 117.49459 * 180.08726 * 10 8 7 13 13 C 1.50705 * 109.47034 * 184.34016 * 5 2 1 14 14 O 1.21278 * 119.99771 * 94.23980 * 13 5 2 15 15 N 1.34769 * 120.00244 * 274.23286 * 13 5 2 16 16 C 1.46502 * 119.99943 * 184.52202 * 15 13 5 17 17 H 1.08994 * 109.47288 * 35.00222 * 16 15 13 18 18 C 1.50708 * 109.47109 * 155.00209 * 16 15 13 19 19 H 1.07994 * 119.99859 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99618 * 179.97438 * 18 16 15 21 21 N 1.31517 * 120.00664 * 0.02562 * 20 18 16 22 22 Si 1.86810 * 119.99759 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46917 * 60.00237 * 22 20 18 24 24 H 1.48496 * 109.47101 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46919 * 300.00269 * 22 20 18 26 26 C 1.53000 * 109.46859 * 274.99685 * 16 15 13 27 27 F 1.39905 * 109.46993 * 60.00415 * 26 16 15 28 28 F 1.39902 * 109.47425 * 180.02562 * 26 16 15 29 29 F 1.39897 * 109.47350 * 300.00179 * 26 16 15 30 30 H 1.08993 * 109.47047 * 299.99887 * 1 2 3 31 31 H 1.08997 * 109.47202 * 60.00413 * 1 2 3 32 32 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 33 33 H 0.96702 * 114.00674 * 174.68025 * 4 2 1 34 34 H 0.97002 * 119.99758 * 264.99666 * 7 5 2 35 35 H 1.08993 * 115.55215 * 34.41367 * 10 8 7 36 36 H 1.08995 * 117.49549 * 0.02562 * 11 10 8 37 37 H 1.09004 * 117.49211 * 145.02350 * 11 10 8 38 38 H 1.09002 * 117.49538 * 214.97656 * 12 10 8 39 39 H 1.08998 * 117.50454 * 359.97075 * 12 10 8 40 40 H 0.96998 * 120.00251 * 4.51639 * 15 13 5 41 41 H 0.96996 * 120.00088 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 1 1.7416 -1.7689 1.2112 7 7 1.4682 -0.0936 2.4432 8 6 0.2524 -0.4707 2.8859 9 8 -0.3704 -1.3260 2.2931 10 6 -0.3332 0.1705 4.1175 11 6 -0.4717 -0.6992 5.3688 12 6 -1.7160 -0.3023 4.5705 13 6 3.5432 -0.6287 1.3042 14 8 4.0734 0.2593 1.9375 15 7 4.2984 -1.5329 0.6495 16 6 5.7570 -1.5030 0.7829 17 1 6.0232 -1.1975 1.7948 18 6 6.3146 -2.8762 0.5097 19 1 5.6491 -3.6896 0.2612 20 6 7.6745 -3.0937 0.5761 21 7 8.4850 -2.1031 0.8783 22 14 8.3657 -4.7960 0.2382 23 1 8.0025 -5.2130 -1.1400 24 1 9.8442 -4.7657 0.3733 25 1 7.7997 -5.7625 1.2131 26 6 6.3406 -0.5067 -0.2209 27 9 5.8230 0.7681 0.0327 28 9 7.7336 -0.4785 -0.0940 29 9 5.9990 -0.8989 -1.5196 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.9668 -0.6415 -1.2750 34 1 1.9663 0.5905 2.9173 35 1 -0.0893 1.2231 4.2607 36 1 -0.1389 -1.7349 5.3011 37 1 -0.3193 -0.2185 6.3351 38 1 -2.3818 0.4393 5.0121 39 1 -2.2025 -1.0767 3.9775 40 1 3.8762 -2.2034 0.0901 41 1 9.4417 -2.2561 0.9246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471960813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:22 Heat of formation + Delta-G solvation = -254.221806 kcal Electronic energy + Delta-G solvation = -31521.145849 eV Core-core repulsion = 26600.948255 eV Total energy + Delta-G solvation = -4920.197594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.42392 -48.05220 -47.73341 -41.87768 -40.50661 -38.43934 -37.11169 -36.68277 -35.51517 -34.52878 -32.02877 -30.85679 -28.62800 -26.60417 -25.15332 -23.78718 -23.28230 -22.55171 -21.60589 -21.28075 -19.59257 -19.05355 -18.90291 -18.77058 -18.51718 -18.22474 -17.47539 -17.18196 -16.89195 -16.52796 -16.18966 -15.69904 -15.36602 -15.18799 -15.03891 -14.94016 -14.74171 -14.50407 -14.44453 -14.30225 -14.06741 -13.94530 -13.77335 -13.54700 -13.29250 -13.08086 -13.00542 -12.82120 -12.64430 -12.49571 -12.39029 -12.25248 -11.65140 -11.63813 -11.49199 -11.43602 -11.06845 -10.95137 -10.70334 -10.24858 -10.12509 -8.24005 -6.54686 1.22940 1.43223 1.46607 1.48781 1.56034 1.67096 2.24096 2.37564 2.49820 2.91931 2.93169 3.12607 3.33631 3.55448 3.71847 3.77232 3.83635 3.86401 3.89988 4.01838 4.15234 4.23764 4.25084 4.34414 4.77871 4.78333 4.82499 4.86607 4.94103 5.04036 5.15808 5.23102 5.24321 5.27117 5.47992 5.61454 6.36363 6.41719 6.45385 6.50520 7.01471 7.11387 7.19043 8.67924 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003563 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.570049 B = 7857.156544 C = 8410.925727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.102 3.898 3 H 0.065 0.935 4 O -0.563 6.563 5 C 0.111 3.889 6 H 0.113 0.887 7 N -0.701 5.701 8 C 0.543 3.457 9 O -0.563 6.563 10 C -0.202 4.202 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.501 3.499 14 O -0.553 6.553 15 N -0.698 5.698 16 C 0.254 3.746 17 H 0.053 0.947 18 C -0.564 4.564 19 H 0.091 0.909 20 C 0.020 3.980 21 N -0.871 5.871 22 Si 0.978 3.022 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.265 1.265 26 C 0.414 3.586 27 F -0.216 7.216 28 F -0.151 7.151 29 F -0.201 7.201 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.382 0.618 34 H 0.417 0.583 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.415 0.585 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 4.054 4.665 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.041 3.959 3 H 0.083 0.917 4 O -0.369 6.369 5 C 0.001 3.999 6 H 0.131 0.869 7 N -0.356 5.356 8 C 0.332 3.668 9 O -0.442 6.442 10 C -0.223 4.223 11 C -0.186 4.186 12 C -0.178 4.178 13 C 0.286 3.714 14 O -0.431 6.431 15 N -0.349 5.349 16 C 0.147 3.853 17 H 0.070 0.930 18 C -0.601 4.601 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.505 5.505 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.189 1.189 26 C 0.358 3.642 27 F -0.198 7.198 28 F -0.132 7.132 29 F -0.183 7.183 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.255 0.745 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.252 0.748 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.694 4.033 4.622 16.850 hybrid contribution 1.807 -0.294 -0.435 1.882 sum -13.887 3.738 4.186 14.979 Atomic orbital electron populations 1.21734 0.90814 1.03303 1.02412 1.22129 0.96915 0.94572 0.82259 0.91727 1.86532 1.28061 1.78559 1.43719 1.21478 0.88455 1.01387 0.88604 0.86928 1.45614 1.19161 1.42799 1.28011 1.20227 0.80030 0.81511 0.85077 1.90702 1.60901 1.33555 1.59015 1.22256 1.04184 1.01944 0.93908 1.23063 1.01422 0.99536 0.94540 1.23042 0.89527 1.03601 1.01637 1.21011 0.89746 0.81457 0.79196 1.90702 1.74776 1.34569 1.43040 1.46044 1.06670 1.33364 1.48870 1.19389 0.77481 0.94831 0.93619 0.92957 1.21173 0.93248 0.93219 1.52460 0.89136 1.25906 0.97093 1.01701 0.93894 1.70499 1.04748 1.31842 1.43385 0.85277 0.76954 0.78311 0.79235 1.19156 1.20969 1.18919 1.23216 0.78379 0.80368 0.82221 1.93075 1.87342 1.45191 1.94145 1.93384 1.28649 1.95831 1.95334 1.93003 1.92414 1.91013 1.41842 0.90926 0.91142 0.91892 0.76975 0.74509 0.83269 0.89653 0.85282 0.85301 0.89086 0.74766 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.06 71.98 0.58 -2.54 16 2 C 0.10 2.76 3.37 30.59 0.10 2.86 16 3 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 4 O -0.56 -16.18 13.26 -148.98 -1.98 -18.16 16 5 C 0.11 3.16 2.46 44.25 0.11 3.27 16 6 H 0.11 3.34 7.57 -2.38 -0.02 3.32 16 7 N -0.70 -17.35 4.86 -446.09 -2.17 -19.52 16 8 C 0.54 12.91 5.83 87.66 0.51 13.42 16 9 O -0.56 -16.63 13.40 -3.02 -0.04 -16.67 16 10 C -0.20 -3.29 6.19 -11.54 -0.07 -3.36 16 11 C -0.15 -2.11 10.24 30.62 0.31 -1.80 16 12 C -0.14 -1.98 10.05 30.62 0.31 -1.67 16 13 C 0.50 17.66 6.13 87.66 0.54 18.20 16 14 O -0.55 -22.76 14.40 -3.02 -0.04 -22.80 16 15 N -0.70 -25.98 4.30 -446.09 -1.92 -27.90 16 16 C 0.25 11.86 2.20 44.25 0.10 11.96 16 17 H 0.05 2.81 7.65 -2.39 -0.02 2.79 16 18 C -0.56 -27.29 8.47 25.60 0.22 -27.07 16 19 H 0.09 4.07 7.74 -2.91 -0.02 4.05 16 20 C 0.02 1.00 5.20 84.65 0.44 1.44 16 21 N -0.87 -46.51 9.50 21.45 0.20 -46.30 16 22 Si 0.98 39.57 29.54 68.60 2.03 41.60 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C 0.41 20.02 2.81 71.98 0.20 20.22 16 27 F -0.22 -10.17 15.50 44.97 0.70 -9.47 16 28 F -0.15 -8.11 12.91 44.97 0.58 -7.53 16 29 F -0.20 -9.12 16.94 44.97 0.76 -8.36 16 30 H 0.07 1.70 5.92 -2.39 -0.01 1.68 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.76 7.24 -2.38 -0.02 1.74 16 33 H 0.38 10.73 7.58 -74.06 -0.56 10.17 16 34 H 0.42 9.77 7.79 -92.71 -0.72 9.04 16 35 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.64 7.67 -2.39 -0.02 1.62 16 40 H 0.41 13.54 8.25 -92.71 -0.77 12.77 16 41 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -62.00 351.48 0.55 -61.45 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.92 Total: 38.72 kcal Atomic # 6 Polarization: 31.59 SS G_CDS: 3.35 Total: 34.93 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -3.88 Total: -93.72 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.06 Total: -57.62 kcal Atomic # 9 Polarization: -27.40 SS G_CDS: 2.04 Total: -25.36 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -62.00 0.55 -61.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471960813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.769 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds