Wall clock time and date at job start Tue Mar 31 2020 20:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91493 * 2 1 4 4 C 1.54914 * 111.00205 * 236.10153 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.34777 * 125.64500 * 204.16642 * 5 4 2 7 7 O 1.21628 * 120.00117 * 179.97438 * 6 5 4 8 8 C 1.47103 * 120.00123 * 359.95448 * 6 5 4 9 9 C 1.38389 * 127.99602 * 179.70888 * 8 6 5 10 10 C 1.37570 * 111.26078 * 179.88544 * 9 8 6 11 11 N 1.29561 * 117.95355 * 0.43279 * 10 9 8 12 12 S 1.56308 * 110.37721 * 359.75262 * 11 10 9 13 13 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 14 14 C 1.54325 * 107.40412 * 358.86539 * 13 5 4 15 15 H 1.09002 * 110.72265 * 219.52294 * 14 13 5 16 16 N 1.46902 * 110.72121 * 96.24535 * 14 13 5 17 17 C 1.46895 * 110.99870 * 86.45508 * 16 14 13 18 18 C 1.50703 * 109.46940 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99905 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99680 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99790 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99651 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00191 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00033 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47148 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47070 * 120.00188 * 25 23 21 28 28 H 1.48501 * 109.47701 * 240.00398 * 25 23 21 29 29 H 1.08997 * 109.47294 * 182.44417 * 1 2 3 30 30 H 1.08997 * 109.47279 * 302.45097 * 1 2 3 31 31 H 1.09006 * 109.47100 * 62.44891 * 1 2 3 32 32 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 33 33 H 1.09003 * 110.36718 * 323.75571 * 4 2 1 34 34 H 1.08001 * 124.36893 * 0.02748 * 9 8 6 35 35 H 1.08009 * 121.02988 * 180.18469 * 10 9 8 36 36 H 1.09002 * 109.88241 * 118.36067 * 13 5 4 37 37 H 1.09000 * 109.88049 * 239.37196 * 13 5 4 38 38 H 1.00899 * 110.99583 * 322.50215 * 16 14 13 39 39 H 1.08998 * 109.47130 * 300.00212 * 17 16 14 40 40 H 1.09002 * 109.46823 * 60.00395 * 17 16 14 41 41 H 0.97004 * 120.00326 * 0.02562 * 20 18 17 42 42 H 0.96996 * 120.00229 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4480 -1.5603 -1.5942 7 8 5.5164 -1.9090 -1.1291 8 6 4.2700 -1.4851 -3.0524 9 6 5.1987 -1.7648 -4.0396 10 6 4.6638 -1.5826 -5.2938 11 7 3.4330 -1.1867 -5.3775 12 16 2.8204 -1.0085 -3.9506 13 6 3.4674 -1.2743 0.6959 14 6 2.0879 -0.8066 1.2055 15 1 2.1967 -0.1682 2.0824 16 7 1.2259 -1.9583 1.5031 17 6 1.4480 -2.4422 2.8721 18 6 0.5480 -3.6208 3.1404 19 8 -0.2041 -4.0188 2.2760 20 7 0.5795 -4.2333 4.3406 21 6 -0.2396 -5.3052 4.5849 22 1 -0.9098 -5.6590 3.8155 23 6 -0.2067 -5.9370 5.8220 24 7 0.6092 -5.5067 6.7581 25 14 -1.3233 -7.3970 6.1552 26 1 -2.1402 -7.6810 4.9480 27 1 -0.4976 -8.5865 6.4847 28 1 -2.2193 -7.0846 7.2974 29 1 -0.3634 -1.0267 0.0438 30 1 -0.3634 0.5514 0.8672 31 1 -0.3633 0.4754 -0.9112 32 1 2.1559 -0.1720 -2.0838 33 1 1.4518 -1.6703 -1.4026 34 1 6.2119 -2.0870 -3.8498 35 1 5.2529 -1.7601 -6.1816 36 1 3.6650 -2.2895 1.0399 37 1 4.2444 -0.6019 1.0597 38 1 1.3658 -2.6977 0.8310 39 1 2.4886 -2.7459 2.9858 40 1 1.2226 -1.6448 3.5803 41 1 1.1812 -3.9153 5.0318 42 1 0.6325 -5.9479 7.6216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484890331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:01 Heat of formation + Delta-G solvation = -13.211716 kcal Electronic energy + Delta-G solvation = -26477.123147 eV Core-core repulsion = 22584.278897 eV Total energy + Delta-G solvation = -3892.844250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60073 -39.56330 -38.47206 -37.80109 -34.69791 -33.83915 -32.55253 -31.95411 -31.23487 -29.32956 -26.97909 -26.52454 -25.78519 -24.09456 -23.14433 -21.76425 -20.08470 -19.62239 -19.34982 -18.73272 -17.94254 -17.06847 -16.81891 -16.07152 -16.04487 -15.42278 -15.33401 -14.76433 -14.60813 -14.53506 -14.05676 -13.91460 -13.70538 -13.65529 -13.46350 -13.17340 -12.91485 -12.38988 -12.28851 -12.08837 -11.83807 -11.68327 -11.56352 -11.45378 -11.17761 -11.06236 -10.89512 -10.58559 -10.36149 -10.33742 -10.24801 -10.07183 -9.54607 -9.21763 -9.00668 -8.53462 -8.16539 -7.99083 -6.44264 -3.85157 -0.06019 0.90899 1.52965 1.86546 2.51046 2.78092 3.14781 3.25755 3.32648 3.86870 3.90586 4.02005 4.15756 4.26746 4.47654 4.62425 4.65150 4.76137 4.97254 5.07130 5.09650 5.13391 5.23013 5.27331 5.41098 5.45374 5.49830 5.58930 5.61597 5.76247 5.85790 5.88158 5.98179 6.04799 6.14459 6.22254 6.53453 7.06138 7.06961 7.48410 7.53142 7.73167 8.03449 8.57804 9.15270 9.51232 10.01964 10.73430 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002303 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.473235 B =12156.057917 C =12375.145762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 H 0.087 0.913 4 C 0.088 3.912 5 N -0.609 5.609 6 C 0.609 3.391 7 O -0.524 6.524 8 C -0.267 4.267 9 C -0.110 4.110 10 C 0.059 3.941 11 N -0.534 5.534 12 S 0.433 5.567 13 C 0.077 3.923 14 C 0.079 3.921 15 H 0.105 0.895 16 N -0.651 5.651 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.352 0.648 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 14.022 -17.434 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.036 4.036 5 N -0.342 5.342 6 C 0.396 3.604 7 O -0.401 6.401 8 C -0.401 4.401 9 C -0.146 4.146 10 C -0.133 4.133 11 N -0.363 5.363 12 S 0.589 5.411 13 C -0.047 4.047 14 C -0.033 4.033 15 H 0.123 0.877 16 N -0.282 5.282 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.198 0.802 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.226 0.774 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.839 14.477 -18.036 23.629 hybrid contribution 2.696 -1.592 0.654 3.198 sum 7.535 12.885 -17.383 22.912 Atomic orbital electron populations 1.21554 0.92001 1.04424 1.01020 1.22410 0.97998 0.98011 0.92268 0.89429 1.22808 0.83200 0.99512 0.98103 1.48244 1.12125 1.66487 1.07372 1.16330 0.83064 0.77736 0.83243 1.90845 1.25583 1.47449 1.76217 1.26776 1.02089 1.12797 0.98414 1.22129 1.02001 1.00205 0.90274 1.22255 0.90778 1.01158 0.99120 1.72152 1.15489 1.21815 1.26831 1.82049 1.15390 1.54107 0.89586 1.22931 1.00193 1.02730 0.78853 1.22785 0.88055 0.94138 0.98307 0.87717 1.60129 1.54180 1.10269 1.03635 1.21743 0.97829 0.97928 0.90970 1.19754 0.87366 0.86217 0.84081 1.90525 1.43228 1.67450 1.45578 1.41872 1.37167 1.28693 1.12208 1.19742 1.17668 1.06326 0.99085 0.87860 1.25268 0.97863 0.99443 0.95385 1.69617 1.37520 1.41833 1.05256 0.85805 0.79577 0.80465 0.78530 1.19209 1.20771 1.20721 0.89890 0.91999 0.93328 0.90814 0.89464 0.80741 0.80184 0.90687 0.90526 0.82779 0.93658 0.89265 0.77448 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.99 37.16 0.33 -0.86 16 2 C -0.09 -0.73 3.56 -88.33 -0.31 -1.04 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.09 0.77 5.11 -2.53 -0.01 0.76 16 5 N -0.61 -6.68 3.33 -171.90 -0.57 -7.25 16 6 C 0.61 7.75 7.83 -12.66 -0.10 7.65 16 7 O -0.52 -8.40 17.29 5.25 0.09 -8.31 16 8 C -0.27 -2.80 6.63 -35.93 -0.24 -3.03 16 9 C -0.11 -0.98 10.40 -39.77 -0.41 -1.40 16 10 C 0.06 0.48 11.14 -18.75 -0.21 0.27 16 11 N -0.53 -5.30 11.29 21.63 0.24 -5.06 16 12 S 0.43 3.78 19.34 -107.50 -2.08 1.70 16 13 C 0.08 0.84 6.31 -3.07 -0.02 0.82 16 14 C 0.08 0.80 3.04 -65.74 -0.20 0.60 16 15 H 0.10 0.94 7.90 -51.93 -0.41 0.52 16 16 N -0.65 -8.91 4.39 -105.91 -0.47 -9.38 16 17 C 0.05 0.76 5.99 -4.98 -0.03 0.73 16 18 C 0.44 9.86 7.82 -10.98 -0.09 9.78 16 19 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 20 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 21 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 25 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H 0.08 0.95 7.16 -51.93 -0.37 0.58 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.53 5.12 -32.78 -0.17 0.37 16 33 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.29 8.13 -39.29 -0.32 4.97 16 39 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 40 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 41 H 0.39 9.23 7.90 -40.82 -0.32 8.90 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.30 364.62 -8.37 -41.66 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.28 Total: 11.30 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.53 Total: 6.43 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.13 Total: -59.08 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.08 Total: 1.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.30 -8.37 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484890331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.451 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds