Wall clock time and date at job start Tue Mar 31 2020 21:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47210 * 2 1 4 4 C 1.52999 * 109.47325 * 119.99761 * 2 1 3 5 5 N 1.46496 * 109.47064 * 175.00063 * 4 2 1 6 6 C 1.34777 * 119.99909 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00322 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00315 * 180.02562 * 6 5 4 9 9 H 1.08999 * 110.66376 * 58.20367 * 8 6 5 10 10 C 1.54710 * 110.74511 * 294.99565 * 8 6 5 11 11 C 1.51647 * 101.90934 * 267.03672 * 10 8 6 12 12 C 1.37742 * 132.16771 * 164.34864 * 11 10 8 13 13 C 1.38447 * 119.96758 * 180.35590 * 12 11 10 14 14 Cl 1.73603 * 120.13130 * 179.97438 * 13 12 11 15 15 C 1.38383 * 119.74071 * 359.91904 * 13 12 11 16 16 C 1.37925 * 120.33613 * 359.88766 * 15 13 12 17 17 C 1.38871 * 107.03428 * 344.32005 * 11 10 8 18 18 O 1.36159 * 111.24669 * 359.35841 * 17 11 10 19 19 N 1.46501 * 109.47141 * 240.00066 * 2 1 3 20 20 C 1.46496 * 119.99868 * 299.99969 * 19 2 1 21 21 C 1.36934 * 120.00087 * 119.99692 * 19 2 1 22 22 H 1.08003 * 120.00107 * 337.27193 * 21 19 2 23 23 C 1.38811 * 119.99985 * 157.26506 * 21 19 2 24 24 N 1.31615 * 120.00201 * 330.64545 * 23 21 19 25 25 Si 1.86801 * 120.00153 * 150.64178 * 23 21 19 26 26 H 1.48499 * 109.47464 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.47236 * 300.00675 * 25 23 21 28 28 H 1.48506 * 109.46814 * 59.99975 * 25 23 21 29 29 H 1.08995 * 109.47256 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.46976 * 60.00216 * 1 2 3 31 31 H 1.09003 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47149 * 295.00489 * 4 2 1 33 33 H 1.09002 * 109.46463 * 55.00344 * 4 2 1 34 34 H 0.96997 * 120.00055 * 359.97438 * 5 4 2 35 35 H 1.08999 * 110.94418 * 25.18875 * 10 8 6 36 36 H 1.08999 * 110.94435 * 148.87952 * 10 8 6 37 37 H 1.08000 * 120.01810 * 0.27309 * 12 11 10 38 38 H 1.08002 * 119.83244 * 179.86959 * 15 13 12 39 39 H 1.08007 * 119.87147 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47066 * 272.77670 * 20 19 2 41 41 H 1.09000 * 109.47494 * 32.77865 * 20 19 2 42 42 H 1.08998 * 109.47352 * 152.78218 * 20 19 2 43 43 H 0.97004 * 119.99731 * 354.35710 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4290 2.1907 7 8 3.5700 -1.8840 3.1395 8 6 5.6750 -1.5367 2.1306 9 1 6.1286 -0.5486 2.0529 10 6 6.1133 -2.4353 0.9500 11 6 6.2257 -3.7933 1.6153 12 6 6.2994 -5.0702 1.1040 13 6 6.3909 -6.1540 1.9607 14 17 6.4833 -7.7652 1.3209 15 6 6.4095 -5.9478 3.3290 16 6 6.3398 -4.6694 3.8418 17 6 6.2499 -3.5739 2.9864 18 8 6.1810 -2.2450 3.2747 19 7 2.0183 -0.6906 -1.1962 20 6 1.6644 -2.0931 -1.4280 21 6 2.8055 -0.0251 -2.0976 22 1 2.7752 1.0533 -2.1483 23 6 3.6426 -0.7365 -2.9461 24 7 4.1353 -1.8959 -2.5647 25 14 4.0699 -0.0485 -4.6294 26 1 4.9737 -0.9921 -5.3351 27 1 2.8263 0.1321 -5.4207 28 1 4.7500 1.2621 -4.4704 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9823 -0.4627 0.4315 35 1 5.3553 -2.4468 0.1668 36 1 7.0766 -2.1149 0.5531 37 1 6.2845 -5.2261 0.0354 38 1 6.4787 -6.7923 3.9987 39 1 6.3544 -4.5171 4.9110 40 1 2.3886 -2.7377 -0.9299 41 1 0.6693 -2.2877 -1.0280 42 1 1.6721 -2.2977 -2.4986 43 1 3.9808 -2.2150 -1.6618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485327772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:56 Heat of formation + Delta-G solvation = -26.330030 kcal Electronic energy + Delta-G solvation = -27813.600201 eV Core-core repulsion = 23885.850641 eV Total energy + Delta-G solvation = -3927.749560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.48311 -39.06498 -37.70430 -36.86485 -36.12836 -34.01256 -32.98443 -32.11145 -29.92117 -29.77756 -29.15283 -26.30018 -26.09096 -24.08184 -22.86850 -22.44520 -21.77587 -20.20154 -19.54026 -17.84231 -17.54059 -17.08641 -16.91894 -16.23429 -15.52780 -15.29089 -14.97836 -14.37125 -14.19936 -13.91280 -13.69811 -13.65884 -13.33978 -13.21575 -12.98964 -12.81062 -12.48210 -12.36607 -12.33950 -12.15836 -11.80946 -11.60829 -11.35576 -11.15994 -10.95837 -10.92069 -10.78589 -10.73299 -10.64660 -10.29860 -10.10311 -9.57331 -9.53961 -9.01761 -8.64054 -8.47792 -8.07545 -7.10829 -6.21849 -3.34937 1.08146 1.19216 2.09574 2.77341 2.98301 3.40115 3.46672 3.55538 3.60649 3.62830 4.35543 4.45606 4.48726 4.76061 4.90923 5.04895 5.05572 5.09991 5.16084 5.27790 5.40689 5.48053 5.65399 5.75660 5.79928 5.87988 5.92229 5.96751 5.98514 6.14306 6.15354 6.21102 6.28683 6.35329 6.44062 6.57125 6.68622 6.79327 6.91472 7.00563 7.03303 7.85003 7.90725 8.41923 8.50776 8.95232 9.69822 10.10290 11.05195 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.003896 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.746933 B = 7184.374318 C = 8394.096500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.071 0.929 4 C 0.106 3.894 5 N -0.698 5.698 6 C 0.493 3.507 7 O -0.539 6.539 8 C 0.064 3.936 9 H 0.142 0.858 10 C -0.101 4.101 11 C -0.153 4.153 12 C -0.055 4.055 13 C -0.065 4.065 14 Cl -0.071 7.071 15 C -0.078 4.078 16 C -0.125 4.125 17 C 0.118 3.882 18 O -0.273 6.273 19 N -0.596 5.596 20 C 0.134 3.866 21 C -0.365 4.365 22 H 0.058 0.942 23 C -0.014 4.014 24 N -0.906 5.906 25 Si 1.057 2.943 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.293 1.293 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.414 0.586 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.009 0.991 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -3.415 8.743 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.089 0.911 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.277 3.723 7 O -0.417 6.417 8 C 0.005 3.995 9 H 0.160 0.840 10 C -0.138 4.138 11 C -0.154 4.154 12 C -0.074 4.074 13 C -0.092 4.092 14 Cl -0.042 7.042 15 C -0.097 4.097 16 C -0.144 4.144 17 C 0.073 3.927 18 O -0.185 6.185 19 N -0.319 5.319 20 C -0.011 4.011 21 C -0.493 4.493 22 H 0.076 0.924 23 C -0.218 4.218 24 N -0.546 5.546 25 Si 0.887 3.113 26 H -0.212 1.212 27 H -0.222 1.222 28 H -0.221 1.221 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.252 0.748 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.750 -4.075 8.113 10.246 hybrid contribution -0.719 0.410 0.783 1.139 sum 4.031 -3.664 8.896 10.431 Atomic orbital electron populations 1.22140 0.97258 1.01428 1.00901 1.20666 0.92739 0.96032 0.85462 0.91054 1.22001 0.79543 1.01101 0.99361 1.45818 1.08350 1.58010 1.22869 1.20694 0.89438 0.78910 0.83236 1.90689 1.69644 1.47777 1.33564 1.23349 0.92761 0.98756 0.84668 0.84040 1.21863 1.05058 0.89350 0.97509 1.20659 1.05946 0.95079 0.93746 1.20177 0.97499 0.89194 1.00482 1.20586 1.09294 0.85905 0.93387 1.98355 1.96945 1.21964 1.86982 1.20691 0.99090 0.96677 0.93215 1.20119 1.05724 0.88831 0.99683 1.19639 0.95237 0.84800 0.93067 1.86898 1.78347 1.14879 1.38373 1.43981 1.57895 1.09217 1.20854 1.20931 0.95054 0.85227 0.99870 1.19950 1.20971 0.92289 1.16116 0.92414 1.25666 0.94366 0.97437 1.04298 1.70852 1.39634 1.22814 1.21281 0.83638 0.76016 0.75064 0.76601 1.21205 1.22221 1.22053 0.93383 0.92244 0.93053 0.92520 0.92416 0.74834 0.86743 0.87549 0.84253 0.84252 0.84543 0.97326 0.96523 0.93041 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.17 37.16 0.34 -2.16 16 2 C 0.16 2.89 2.87 -67.93 -0.20 2.70 16 3 H 0.07 1.30 7.86 -51.93 -0.41 0.90 16 4 C 0.11 1.87 4.97 -4.04 -0.02 1.85 16 5 N -0.70 -12.35 5.22 -60.30 -0.32 -12.66 16 6 C 0.49 8.88 7.07 -10.98 -0.08 8.81 16 7 O -0.54 -11.49 16.53 -13.51 -0.22 -11.72 16 8 C 0.06 0.97 4.11 -26.98 -0.11 0.86 16 9 H 0.14 1.67 8.14 -51.93 -0.42 1.25 16 10 C -0.10 -1.50 6.64 -26.52 -0.18 -1.67 16 11 C -0.15 -2.37 6.26 -104.10 -0.65 -3.02 16 12 C -0.05 -0.80 9.82 -39.69 -0.39 -1.19 16 13 C -0.07 -0.87 6.33 -39.45 -0.25 -1.12 16 14 Cl -0.07 -0.87 28.97 -51.86 -1.50 -2.38 16 15 C -0.08 -0.96 9.81 -39.64 -0.39 -1.35 16 16 C -0.12 -1.68 10.06 -39.31 -0.40 -2.07 16 17 C 0.12 1.85 6.91 -38.96 -0.27 1.58 16 18 O -0.27 -4.43 10.41 -39.31 -0.41 -4.84 16 19 N -0.60 -12.91 2.17 -173.49 -0.38 -13.28 16 20 C 0.13 2.96 8.14 59.84 0.49 3.44 16 21 C -0.36 -8.82 9.14 -15.06 -0.14 -8.96 16 22 H 0.06 1.42 7.94 -52.48 -0.42 1.01 16 23 C -0.01 -0.35 4.62 -17.43 -0.08 -0.43 16 24 N -0.91 -23.55 12.70 55.49 0.70 -22.85 16 25 Si 1.06 23.04 30.01 -169.99 -5.10 17.94 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.82 6.67 -51.93 -0.35 0.47 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 34 H 0.41 7.58 7.89 -40.82 -0.32 7.25 16 35 H 0.11 1.98 7.40 -51.93 -0.38 1.59 16 36 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.01 0.20 6.84 -51.93 -0.36 -0.15 16 41 H 0.02 0.33 6.43 -51.93 -0.33 -0.01 16 42 H 0.05 1.24 7.22 -51.93 -0.37 0.87 16 43 H 0.27 6.89 5.93 -40.82 -0.24 6.65 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -28.69 370.15 -9.73 -38.42 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.77 Total: 8.53 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.31 Total: -2.74 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.01 Total: -48.79 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.63 Total: -16.56 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.10 Total: 17.94 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.69 -9.73 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485327772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.092 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds