Wall clock time and date at job start Tue Mar 31 2020 20:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46486 * 2 1 4 4 C 1.52992 * 109.47309 * 119.99681 * 2 1 3 5 5 N 1.46503 * 109.47105 * 175.00258 * 4 2 1 6 6 C 1.34781 * 119.99828 * 179.97438 * 5 4 2 7 7 O 1.21517 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.48153 * 119.99860 * 179.97438 * 6 5 4 9 9 C 1.39435 * 120.09554 * 180.02562 * 8 6 5 10 10 N 1.32083 * 119.87027 * 179.70092 * 9 8 6 11 11 C 1.32130 * 120.07345 * 0.53829 * 10 9 8 12 12 C 1.38732 * 120.19355 * 359.48336 * 11 10 9 13 13 N 1.31798 * 120.12713 * 0.23493 * 12 11 10 14 14 N 1.46496 * 109.47512 * 240.00397 * 2 1 3 15 15 C 1.46506 * 119.99898 * 299.99702 * 14 2 1 16 16 C 1.34774 * 120.00417 * 119.99480 * 14 2 1 17 17 O 1.21284 * 120.00183 * 359.97438 * 16 14 2 18 18 C 1.50698 * 119.99972 * 180.02562 * 16 14 2 19 19 S 1.81002 * 109.47221 * 180.02562 * 18 16 14 20 20 C 1.76198 * 100.00218 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99857 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00138 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46949 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46809 * 119.99865 * 24 22 20 27 27 H 1.48497 * 109.46939 * 240.00012 * 24 22 20 28 28 H 1.09005 * 109.47098 * 60.00135 * 1 2 3 29 29 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47057 * 300.00141 * 1 2 3 31 31 H 1.08998 * 109.46942 * 55.00262 * 4 2 1 32 32 H 1.08997 * 109.47329 * 295.00501 * 4 2 1 33 33 H 0.96994 * 120.00116 * 0.02562 * 5 4 2 34 34 H 1.08004 * 120.06381 * 359.97438 * 9 8 6 35 35 H 1.08002 * 119.90689 * 179.76717 * 11 10 9 36 36 H 1.08000 * 119.93472 * 180.25940 * 12 11 10 37 37 H 1.09000 * 109.46935 * 89.99650 * 15 14 2 38 38 H 1.08987 * 109.47474 * 210.00282 * 15 14 2 39 39 H 1.09002 * 109.46480 * 330.00283 * 15 14 2 40 40 H 1.08998 * 109.47446 * 300.00325 * 18 16 14 41 41 H 1.09005 * 109.47501 * 60.00292 * 18 16 14 42 42 H 0.97002 * 119.99956 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1732 -1.4280 2.1912 7 8 3.5690 -1.8839 3.1418 8 6 5.6497 -1.5348 2.1316 9 6 6.3480 -2.1574 3.1654 10 7 7.6638 -2.2554 3.1049 11 6 8.3182 -1.7549 2.0719 12 6 7.6263 -1.1344 1.0418 13 7 6.3129 -1.0372 1.0916 14 7 2.0184 -0.6905 -1.1962 15 6 1.6646 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0833 17 8 3.0858 1.1258 -1.8917 18 6 3.2951 -0.7457 -3.3140 19 16 4.3014 0.3917 -4.2989 20 6 4.7427 -0.6687 -5.6350 21 1 4.3917 -1.6899 -5.6526 22 6 5.5425 -0.1919 -6.6644 23 7 5.9707 1.0526 -6.6427 24 14 6.0110 -1.3164 -8.0806 25 1 5.4059 -2.6560 -7.8700 26 1 5.5098 -0.7422 -9.3552 27 1 7.4891 -1.4445 -8.1427 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6055 -1.7197 1.2951 32 1 1.7517 -0.1582 2.1369 33 1 3.9825 -0.4620 0.4319 34 1 5.8136 -2.5628 4.0120 35 1 9.3944 -1.8332 2.0269 36 1 8.1651 -0.7305 0.1974 37 1 0.7377 -2.1443 -1.9994 38 1 2.4630 -2.5818 -1.9863 39 1 1.5297 -2.5968 -0.4708 40 1 3.9005 -1.6023 -3.0178 41 1 2.4471 -1.0879 -3.9074 42 1 6.5299 1.3857 -7.3619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486791528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:45 Heat of formation + Delta-G solvation = -16.162744 kcal Electronic energy + Delta-G solvation = -26602.227065 eV Core-core repulsion = 22709.254849 eV Total energy + Delta-G solvation = -3892.972216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50941 -40.11715 -39.18314 -36.58130 -34.88289 -34.16328 -32.46305 -32.29755 -31.77915 -28.78184 -27.16932 -26.89873 -25.52586 -25.26519 -24.57702 -21.82586 -21.11077 -19.31037 -18.34197 -17.89159 -17.76463 -17.10048 -17.00455 -16.15981 -15.85655 -15.72435 -15.43989 -15.06835 -14.83836 -14.63996 -14.22437 -14.11540 -13.46735 -13.27921 -13.20320 -13.08636 -12.96326 -12.63678 -12.41757 -12.27670 -12.10268 -11.98845 -11.83280 -11.60182 -11.16297 -11.10332 -11.04525 -10.78366 -10.62997 -9.83095 -9.79993 -9.45848 -9.43354 -9.26764 -9.10672 -8.66245 -8.25931 -6.53260 -6.25266 -3.95553 0.07655 0.73863 2.45209 2.71484 2.88456 2.95140 3.18449 3.22984 3.28019 3.49504 3.55071 3.69244 3.86319 4.11777 4.16828 4.43906 4.52856 4.77549 4.83484 4.90475 4.99769 5.00942 5.06546 5.10198 5.22179 5.28810 5.36921 5.44272 5.46686 5.54252 5.67982 5.83339 5.88359 5.93889 5.95026 6.09464 6.15004 6.55855 6.79132 7.16157 7.40074 7.42501 7.56635 7.87362 8.31934 8.45576 9.20503 10.82107 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.003525 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.241782 B = 7940.446213 C =10206.354501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.110 0.890 4 C 0.108 3.892 5 N -0.701 5.701 6 C 0.576 3.424 7 O -0.535 6.535 8 C 0.026 3.974 9 C 0.106 3.894 10 N -0.442 5.442 11 C 0.072 3.928 12 C 0.058 3.942 13 N -0.405 5.405 14 N -0.620 5.620 15 C 0.079 3.921 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.417 0.583 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -6.891 17.328 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.016 4.016 5 N -0.352 5.352 6 C 0.360 3.640 7 O -0.411 6.411 8 C -0.115 4.115 9 C -0.054 4.054 10 N -0.156 5.156 11 C -0.088 4.088 12 C -0.105 4.105 13 N -0.123 5.123 14 N -0.357 5.357 15 C -0.065 4.065 16 C 0.322 3.678 17 O -0.388 6.388 18 C -0.300 4.300 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.198 0.802 35 H 0.195 0.805 36 H 0.200 0.800 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.046 -5.359 18.198 19.398 hybrid contribution 0.256 -1.979 -1.667 2.600 sum -3.790 -7.339 16.532 18.480 Atomic orbital electron populations 1.22037 0.93596 1.02708 1.03100 1.21290 0.94974 0.98631 0.83243 0.87160 1.21858 0.79597 1.01728 0.98436 1.45808 1.07864 1.57905 1.23671 1.17639 0.85105 0.78512 0.82734 1.90791 1.68519 1.48532 1.33292 1.22185 0.95824 0.99893 0.93641 1.23801 0.90319 0.93235 0.98003 1.68628 1.08333 1.14922 1.23711 1.24170 1.02450 0.92425 0.89802 1.24014 0.90192 0.96478 0.99782 1.68439 1.09820 1.12178 1.21844 1.47952 1.52334 1.12623 1.22801 1.21746 1.01314 0.81539 1.01852 1.20412 0.77001 0.86811 0.83615 1.90706 1.56178 1.16381 1.75517 1.23556 1.04356 1.04661 0.97470 1.85381 1.60945 1.15248 1.21638 1.22897 1.37213 0.99761 1.08425 0.90962 1.24972 0.95101 0.95503 0.97894 1.70023 1.33154 1.14358 1.32703 0.86143 0.78328 0.80147 0.81043 1.19636 1.20556 1.20557 0.91341 0.92011 0.91161 0.90718 0.89980 0.74534 0.80159 0.80489 0.80018 0.92509 0.90648 0.91381 0.89301 0.89277 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.20 37.16 0.34 -0.96 16 2 C 0.12 1.33 2.80 -67.93 -0.19 1.14 16 3 H 0.11 1.43 6.90 -51.92 -0.36 1.07 16 4 C 0.11 1.11 4.92 -4.04 -0.02 1.09 16 5 N -0.70 -8.65 5.38 -61.15 -0.33 -8.98 16 6 C 0.58 7.51 7.81 -12.19 -0.10 7.42 16 7 O -0.53 -7.72 16.35 5.35 0.09 -7.63 16 8 C 0.03 0.32 6.75 -82.84 -0.56 -0.24 16 9 C 0.11 1.17 10.77 -17.00 -0.18 0.99 16 10 N -0.44 -4.68 10.49 -12.71 -0.13 -4.82 16 11 C 0.07 0.62 11.23 -17.24 -0.19 0.43 16 12 C 0.06 0.57 11.22 -17.38 -0.20 0.37 16 13 N -0.41 -5.14 9.71 -9.61 -0.09 -5.23 16 14 N -0.62 -7.90 2.24 -173.94 -0.39 -8.29 16 15 C 0.08 0.78 9.30 59.85 0.56 1.34 16 16 C 0.53 9.38 7.40 -10.99 -0.08 9.30 16 17 O -0.51 -10.85 15.19 5.55 0.08 -10.76 16 18 C -0.15 -2.91 4.71 36.00 0.17 -2.74 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.53 -14.84 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 24 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.42 5.81 7.22 -40.82 -0.29 5.51 16 34 H 0.18 1.73 7.65 -52.48 -0.40 1.33 16 35 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.79 6.44 -51.94 -0.33 0.45 16 39 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 40 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 41 H 0.09 1.62 8.11 -51.91 -0.42 1.20 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -35.31 374.73 -7.25 -42.56 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.37 Total: 4.57 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.25 Total: 5.57 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.21 Total: -52.14 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.31 -7.25 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486791528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.396 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds