Wall clock time and date at job start Tue Mar 31 2020 20:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 N 1.46504 * 109.46795 * 174.99907 * 4 2 1 6 6 C 1.34774 * 120.00039 * 180.02562 * 5 4 2 7 7 O 1.21471 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.48542 * 120.00172 * 179.97438 * 6 5 4 9 9 N 1.32462 * 119.18276 * 359.72975 * 8 6 5 10 10 C 1.32112 * 120.76225 * 179.75514 * 9 8 6 11 11 C 1.38802 * 119.16809 * 0.51138 * 10 9 8 12 12 C 1.38799 * 118.50262 * 359.74425 * 11 10 9 13 13 N 1.32106 * 119.16864 * 0.02562 * 12 11 10 14 14 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 15 15 C 1.46500 * 119.99935 * 299.99945 * 14 2 1 16 16 C 1.34772 * 119.99939 * 120.00347 * 14 2 1 17 17 O 1.21280 * 120.00232 * 0.02562 * 16 14 2 18 18 C 1.50703 * 120.00049 * 179.97438 * 16 14 2 19 19 S 1.81003 * 109.47128 * 180.02562 * 18 16 14 20 20 C 1.76198 * 99.99994 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99956 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00115 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47380 * 90.00245 * 24 22 20 26 26 H 1.48499 * 109.47187 * 210.00239 * 24 22 20 27 27 H 1.48506 * 109.47046 * 329.99898 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 0.97002 * 120.00414 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.41614 * 180.25225 * 10 9 8 35 35 H 1.07993 * 120.74531 * 179.76525 * 11 10 9 36 36 H 1.08002 * 120.41685 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.46877 * 90.00284 * 15 14 2 38 38 H 1.09004 * 109.46845 * 210.00304 * 15 14 2 39 39 H 1.08994 * 109.47249 * 330.00535 * 15 14 2 40 40 H 1.09005 * 109.46894 * 299.99577 * 18 16 14 41 41 H 1.08992 * 109.46945 * 59.99855 * 18 16 14 42 42 H 0.97000 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5688 -1.8857 3.1406 8 6 5.6533 -1.5363 2.1311 9 7 6.2952 -1.0386 1.0847 10 6 7.6116 -1.1125 1.0018 11 6 8.3202 -1.7301 2.0231 12 6 7.6144 -2.2449 3.1017 13 7 6.2983 -2.1324 3.1227 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0357 -2.0832 17 8 3.0867 1.1253 -1.8911 18 6 3.2960 -0.7463 -3.3134 19 16 4.3022 0.3912 -4.2984 20 6 4.7446 -0.6697 -5.6338 21 1 4.3941 -1.6911 -5.6510 22 6 5.5446 -0.1930 -6.6630 23 7 5.8756 -0.9858 -7.6605 24 14 6.1516 1.5733 -6.6328 25 1 7.4550 1.6369 -5.9242 26 1 6.3205 2.0626 -8.0247 27 1 5.1616 2.4249 -5.9256 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.9824 -0.4629 0.4317 34 1 8.1297 -0.7012 0.1480 35 1 9.3965 -1.8080 1.9796 36 1 8.1346 -2.7313 3.9136 37 1 0.7376 -2.1444 -1.9992 38 1 2.4629 -2.5819 -1.9862 39 1 1.5294 -2.5968 -0.4707 40 1 3.9018 -1.6024 -3.0164 41 1 2.4485 -1.0892 -3.9068 42 1 6.4350 -0.6528 -8.3796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486970084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:22 Heat of formation + Delta-G solvation = -9.964547 kcal Electronic energy + Delta-G solvation = -26678.128959 eV Core-core repulsion = 22785.425517 eV Total energy + Delta-G solvation = -3892.703442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48744 -40.15549 -39.14045 -36.62559 -34.62886 -33.90249 -32.71694 -32.46494 -31.95871 -28.90357 -27.28542 -26.94232 -25.64412 -25.08815 -24.69607 -21.90211 -21.19879 -19.41256 -18.52155 -17.89928 -17.76430 -17.09207 -16.45825 -16.19030 -15.94301 -15.67230 -15.52394 -15.14886 -14.99598 -14.58078 -14.07068 -13.99306 -13.89142 -13.51018 -13.31131 -13.15640 -12.90312 -12.81950 -12.51776 -12.29025 -12.18110 -11.90974 -11.59198 -11.28721 -11.24103 -11.19200 -11.04044 -10.61433 -10.31606 -10.09443 -9.88840 -9.63351 -9.54702 -9.28374 -9.03222 -8.72356 -8.51834 -6.94317 -6.31597 -4.03230 0.14021 0.73348 2.41216 2.51414 2.66959 2.84972 3.13861 3.29576 3.47545 3.55738 3.58366 3.64603 3.99105 4.21891 4.29938 4.40052 4.57200 4.63438 4.68862 4.80981 4.89309 4.97664 5.02688 5.07499 5.15874 5.27707 5.36652 5.37718 5.43765 5.44640 5.65358 5.74656 5.83106 5.89529 5.92551 5.98652 6.14162 6.49850 6.55747 7.15300 7.34393 7.61161 7.91387 7.93240 8.35012 8.39066 9.14613 10.77676 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.003720 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.941887 B = 7524.447316 C = 9735.578098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.111 0.889 4 C 0.110 3.890 5 N -0.702 5.702 6 C 0.586 3.414 7 O -0.510 6.510 8 C 0.280 3.720 9 N -0.488 5.488 10 C 0.152 3.848 11 C -0.207 4.207 12 C 0.143 3.857 13 N -0.471 5.471 14 N -0.618 5.618 15 C 0.077 3.923 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.121 4.121 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.417 0.583 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -2.528 19.888 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.129 0.871 4 C -0.014 4.014 5 N -0.355 5.355 6 C 0.367 3.633 7 O -0.383 6.383 8 C 0.009 3.991 9 N -0.204 5.204 10 C -0.015 4.015 11 C -0.229 4.229 12 C -0.024 4.024 13 N -0.186 5.186 14 N -0.355 5.355 15 C -0.067 4.067 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.271 4.271 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.255 0.745 34 H 0.198 0.802 35 H 0.174 0.826 36 H 0.193 0.807 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.219 -1.104 20.725 21.002 hybrid contribution 1.404 -0.822 -0.972 1.895 sum -1.815 -1.925 19.752 19.929 Atomic orbital electron populations 1.22040 0.93471 1.02819 1.03132 1.21305 0.95041 0.98582 0.83125 0.87119 1.21864 0.79303 1.01839 0.98438 1.45732 1.07818 1.58356 1.23619 1.17223 0.83957 0.79152 0.82983 1.90796 1.67882 1.46786 1.32833 1.22838 0.96065 0.93114 0.87042 1.68383 1.11217 1.16948 1.23885 1.23456 0.89065 0.91359 0.97582 1.23245 1.03604 0.99816 0.96257 1.23384 0.89125 0.92952 0.96924 1.68225 1.10152 1.13516 1.26692 1.47915 1.52126 1.12714 1.22725 1.21789 1.01462 0.81338 1.02069 1.20369 0.77148 0.86809 0.83653 1.90701 1.56347 1.16404 1.75588 1.23310 1.03759 1.03330 0.96723 1.84768 1.63737 1.18734 1.24190 1.22311 1.37354 1.00212 1.06974 0.89455 1.24705 0.94470 0.98058 0.94007 1.69942 1.35648 1.36019 1.10112 0.86742 0.81345 0.85198 0.78593 1.19244 1.19980 1.15912 0.91322 0.91912 0.91101 0.89886 0.90616 0.74540 0.80218 0.82632 0.80665 0.92319 0.90523 0.91198 0.88560 0.88507 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.19 37.16 0.34 -0.91 16 2 C 0.12 1.30 2.80 -67.93 -0.19 1.11 16 3 H 0.11 1.37 6.90 -51.93 -0.36 1.01 16 4 C 0.11 1.13 4.92 -4.04 -0.02 1.11 16 5 N -0.70 -8.86 5.38 -61.03 -0.33 -9.19 16 6 C 0.59 8.44 7.85 -12.01 -0.09 8.34 16 7 O -0.51 -8.46 16.86 5.39 0.09 -8.37 16 8 C 0.28 3.86 7.60 -157.07 -1.19 2.66 16 9 N -0.49 -6.30 9.58 -11.12 -0.11 -6.41 16 10 C 0.15 1.46 11.30 -17.22 -0.19 1.26 16 11 C -0.21 -1.48 10.18 -39.17 -0.40 -1.88 16 12 C 0.14 1.22 11.30 -17.23 -0.19 1.03 16 13 N -0.47 -6.07 10.13 -11.12 -0.11 -6.18 16 14 N -0.62 -7.58 2.24 -173.93 -0.39 -7.97 16 15 C 0.08 0.74 9.30 59.85 0.56 1.30 16 16 C 0.53 8.92 7.40 -10.99 -0.08 8.84 16 17 O -0.52 -10.32 15.19 5.56 0.08 -10.24 16 18 C -0.12 -2.25 4.71 36.01 0.17 -2.08 16 19 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16 20 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 21 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 22 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 24 Si 0.86 21.28 27.74 -169.99 -4.71 16.57 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.24 -5.84 6.74 56.52 0.38 -5.45 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.73 6.88 -51.93 -0.36 0.37 16 33 H 0.42 5.74 7.17 -40.82 -0.29 5.45 16 34 H 0.18 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 39 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 40 H 0.10 1.69 7.40 -51.91 -0.38 1.31 16 41 H 0.10 1.71 8.11 -51.92 -0.42 1.29 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -36.53 372.86 -7.58 -44.11 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.42 Total: 3.72 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -1.08 Total: 9.11 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.16 Total: -55.09 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.53 -7.58 -44.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486970084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds