Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47668 * 2 1 4 4 C 1.50700 * 109.46964 * 120.00009 * 2 1 3 5 5 O 1.21287 * 120.00381 * 119.99705 * 4 2 1 6 6 N 1.34781 * 120.00044 * 300.00031 * 4 2 1 7 7 C 1.46500 * 120.00180 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47145 * 179.97438 * 7 6 4 9 9 O 1.42898 * 113.28263 * 313.06835 * 8 7 6 10 10 C 1.53496 * 114.20377 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98324 * 220.34657 * 10 8 7 12 12 C 1.36944 * 136.05683 * 207.08528 * 11 10 8 13 13 H 1.08004 * 119.99874 * 6.90177 * 12 11 10 14 14 C 1.38808 * 119.99887 * 186.89762 * 12 11 10 15 15 N 1.31620 * 119.99758 * 172.36849 * 14 12 11 16 16 Si 1.86803 * 120.00116 * 352.64805 * 14 12 11 17 17 H 1.48502 * 109.46980 * 175.03997 * 16 14 12 18 18 H 1.48501 * 109.46832 * 295.03703 * 16 14 12 19 19 H 1.48495 * 109.47214 * 55.03946 * 16 14 12 20 20 C 1.47058 * 87.88471 * 27.34220 * 11 10 8 21 21 C 1.50703 * 109.47117 * 239.99714 * 2 1 3 22 22 C 1.38267 * 119.98927 * 120.00478 * 21 2 1 23 23 C 1.38225 * 120.02176 * 179.97438 * 22 21 2 24 24 C 1.38235 * 120.01470 * 0.02562 * 23 22 21 25 25 C 1.38325 * 119.98634 * 0.02562 * 24 23 22 26 26 Cl 1.73598 * 120.01493 * 180.02562 * 25 24 23 27 27 C 1.38192 * 119.99547 * 299.72542 * 21 2 1 28 28 H 1.09002 * 109.46975 * 59.99933 * 1 2 3 29 29 H 1.09000 * 109.47668 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47303 * 300.00280 * 1 2 3 31 31 H 0.96997 * 119.99638 * 359.97438 * 6 4 2 32 32 H 1.09004 * 109.46590 * 60.00281 * 7 6 4 33 33 H 1.08999 * 109.47215 * 300.00606 * 7 6 4 34 34 H 0.96696 * 114.00036 * 46.93477 * 9 8 7 35 35 H 1.09007 * 113.46615 * 105.56665 * 10 8 7 36 36 H 1.08998 * 113.52551 * 335.13855 * 10 8 7 37 37 H 0.96999 * 119.99710 * 5.38439 * 15 14 12 38 38 H 1.09000 * 113.46548 * 87.43715 * 20 11 10 39 39 H 1.09001 * 113.47037 * 217.87480 * 20 11 10 40 40 H 1.07999 * 119.98655 * 359.97438 * 22 21 2 41 41 H 1.07999 * 119.98614 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.00730 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.00275 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 1.6851 -0.2192 4.9000 9 8 1.8583 1.1982 4.8436 10 6 2.1353 -0.8558 6.2222 11 7 0.7864 -0.5952 6.7469 12 6 0.2331 -0.3790 7.9808 13 1 0.8698 -0.2682 8.8462 14 6 -1.1459 -0.3022 8.1193 15 7 -1.6847 -0.2453 9.3188 16 14 -2.2375 -0.2874 6.6034 17 1 -3.6626 -0.3216 7.0194 18 1 -1.9799 0.9476 5.8201 19 1 -1.9376 -1.4764 5.7659 20 6 0.2922 -0.6755 5.3642 21 6 2.0323 -0.7105 -1.2304 22 6 2.8273 -0.0384 -2.1404 23 6 3.2889 -0.6895 -3.2689 24 6 2.9554 -2.0130 -3.4887 25 6 2.1593 -2.6855 -2.5791 26 17 1.7406 -4.3477 -2.8540 27 6 1.7031 -2.0352 -1.4461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.1493 0.5389 2.5435 32 1 3.2845 -0.9412 3.6510 33 1 1.8308 -1.9684 3.6506 34 1 1.5740 1.5962 4.0095 35 1 2.9160 -0.2912 6.7321 36 1 2.3703 -1.9167 6.1364 37 1 -1.1172 -0.1782 10.1026 38 1 0.0409 -1.6890 5.0513 39 1 -0.4976 0.0425 5.1430 40 1 3.0877 0.9957 -1.9694 41 1 3.9101 -0.1641 -3.9791 42 1 3.3165 -2.5217 -4.3703 43 1 1.0855 -2.5612 -0.7331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500980272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = -28.249071 kcal Electronic energy + Delta-G solvation = -26661.158287 eV Core-core repulsion = 22733.325511 eV Total energy + Delta-G solvation = -3927.832776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60794 -40.83569 -39.66228 -37.45647 -36.78010 -35.38476 -35.01810 -34.42417 -31.66350 -30.96988 -30.10694 -27.67303 -27.17457 -25.60513 -23.73357 -23.46389 -22.63057 -21.38430 -21.01277 -19.73210 -18.77944 -18.04753 -17.76009 -17.18221 -16.79863 -16.45070 -16.39416 -15.98936 -15.75925 -15.65975 -15.18043 -14.89322 -14.82037 -14.56906 -14.53374 -14.30161 -14.07048 -13.61265 -13.43999 -13.23454 -13.15696 -12.84761 -12.64866 -12.47784 -12.38489 -12.24380 -12.09736 -11.90366 -11.78043 -11.71542 -11.32993 -11.03304 -10.80811 -10.62533 -10.14728 -9.81766 -9.61936 -9.22820 -8.68279 -5.49021 0.20571 0.33919 1.18277 1.34789 1.47825 1.62075 1.67345 2.04832 2.54188 2.72975 2.87310 2.95884 3.17450 3.29951 3.48108 3.75929 3.77211 3.94097 4.09886 4.17217 4.25748 4.33794 4.35037 4.48047 4.52033 4.56308 4.64153 4.71392 4.74560 4.78668 4.84759 4.94574 5.00865 5.02389 5.14994 5.26750 5.30169 5.31461 5.40378 5.54421 5.88584 5.92006 6.44697 6.67038 6.76911 7.20664 7.29465 8.22421 8.87545 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.002467 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.849576 B =11345.852376 C =11678.427675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 H 0.144 0.856 4 C 0.518 3.482 5 O -0.570 6.570 6 N -0.717 5.717 7 C 0.121 3.879 8 C 0.108 3.892 9 O -0.535 6.535 10 C 0.127 3.873 11 N -0.655 5.655 12 C -0.290 4.290 13 H 0.046 0.954 14 C -0.090 4.090 15 N -0.971 5.971 16 Si 1.113 2.887 17 H -0.306 1.306 18 H -0.266 1.266 19 H -0.257 1.257 20 C 0.069 3.931 21 C -0.067 4.067 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.055 4.055 26 Cl -0.084 7.084 27 C -0.094 4.094 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.387 0.613 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.245 0.755 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 2.485 -32.777 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 H 0.162 0.838 4 C 0.305 3.695 5 O -0.448 6.448 6 N -0.371 5.371 7 C -0.004 4.004 8 C 0.065 3.935 9 O -0.342 6.342 10 C 0.001 3.999 11 N -0.383 5.383 12 C -0.417 4.417 13 H 0.064 0.936 14 C -0.281 4.281 15 N -0.616 5.616 16 Si 0.938 3.062 17 H -0.234 1.234 18 H -0.193 1.193 19 H -0.182 1.182 20 C -0.056 4.056 21 C -0.068 4.068 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.081 4.081 26 Cl -0.055 7.055 27 C -0.113 4.113 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.163 0.837 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.631 1.578 -32.507 33.428 hybrid contribution 1.118 -0.205 1.252 1.690 sum 8.748 1.373 -31.256 32.486 Atomic orbital electron populations 1.21879 0.90464 1.02988 1.04857 1.20383 0.98790 1.01272 0.87955 0.83846 1.20997 0.79350 0.84160 0.84989 1.90747 1.39205 1.27796 1.87098 1.45798 1.53895 1.32539 1.04877 1.21617 1.00158 0.96536 0.82138 1.22672 0.94995 0.82135 0.93671 1.86650 1.86771 1.18233 1.42532 1.22639 0.88664 0.98518 0.90088 1.45785 1.06310 1.84229 1.01951 1.19961 0.92133 1.45769 0.83883 0.93623 1.27234 0.96197 0.99525 1.05125 1.71032 1.37175 1.55656 0.97769 0.83238 0.73139 0.78296 0.71522 1.23431 1.19251 1.18232 1.23753 0.97379 0.99783 0.84645 1.19472 0.98265 0.93077 0.95958 1.21512 0.95765 1.01562 0.93610 1.21444 0.99564 0.93468 0.98183 1.21328 0.97491 0.95676 0.99252 1.21084 1.02801 0.86052 0.98175 1.98362 1.92630 1.18325 1.96218 1.20836 1.00126 0.94966 0.95322 0.89373 0.93187 0.89754 0.75041 0.90073 0.90215 0.76290 0.93322 0.90478 0.94633 0.91566 0.92576 0.82399 0.82101 0.83748 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.90 71.98 0.64 -0.72 16 2 C -0.06 -0.74 2.90 -12.29 -0.04 -0.78 16 3 H 0.14 0.73 7.88 -2.39 -0.02 0.72 16 4 C 0.52 9.91 7.02 87.66 0.62 10.53 16 5 O -0.57 -16.13 15.09 -3.05 -0.05 -16.18 16 6 N -0.72 -12.10 5.23 -463.05 -2.42 -14.52 16 7 C 0.12 2.76 5.42 86.38 0.47 3.23 16 8 C 0.11 3.20 1.74 -10.38 -0.02 3.19 16 9 O -0.53 -15.36 13.56 -148.98 -2.02 -17.38 16 10 C 0.13 4.76 8.10 83.17 0.67 5.44 16 11 N -0.65 -31.64 3.69 -738.50 -2.73 -34.37 16 12 C -0.29 -17.27 11.08 84.03 0.93 -16.34 16 13 H 0.05 2.97 8.05 -2.91 -0.02 2.94 16 14 C -0.09 -5.45 5.50 84.86 0.47 -4.98 16 15 N -0.97 -63.76 13.70 21.65 0.30 -63.47 16 16 Si 1.11 52.56 25.13 68.60 1.72 54.29 16 17 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 18 H -0.27 -11.22 6.64 99.48 0.66 -10.56 16 19 H -0.26 -10.73 6.13 99.48 0.61 -10.12 16 20 C 0.07 2.58 5.14 83.26 0.43 3.01 16 21 C -0.07 -1.04 4.40 -19.87 -0.09 -1.13 16 22 C -0.11 -1.22 9.67 22.27 0.22 -1.00 16 23 C -0.11 -1.20 10.05 22.27 0.22 -0.98 16 24 C -0.12 -1.75 9.83 22.29 0.22 -1.53 16 25 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 26 Cl -0.08 -1.68 28.96 -2.72 -0.08 -1.76 16 27 C -0.09 -1.88 7.71 22.29 0.17 -1.71 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.65 7.40 -2.39 -0.02 0.63 16 30 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16 31 H 0.41 4.52 6.37 -92.71 -0.59 3.93 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.95 7.89 -2.39 -0.02 1.93 16 34 H 0.39 6.62 7.21 -74.06 -0.53 6.09 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.08 2.58 8.10 -2.39 -0.02 2.56 16 37 H 0.24 16.20 8.73 -92.71 -0.81 15.39 16 38 H 0.07 2.35 7.50 -2.39 -0.02 2.33 16 39 H 0.06 2.10 4.67 -2.39 -0.01 2.09 16 40 H 0.16 0.81 7.95 -2.91 -0.02 0.78 16 41 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.11 2.57 7.52 -2.91 -0.02 2.55 16 Total: -1.00 -83.41 366.39 -0.47 -83.88 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.25 Total: 14.21 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.05 Total: -4.71 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.85 Total: -112.36 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.07 Total: -33.56 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 1.72 Total: 54.29 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -83.41 -0.47 -83.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500980272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.631 kcal (2) G-P(sol) polarization free energy of solvation -83.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds