Wall clock time and date at job start Tue Mar 31 2020 20:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.99258 * 2 1 4 4 C 1.54319 * 109.88510 * 121.09752 * 2 1 3 5 5 H 1.09002 * 110.72059 * 23.25156 * 4 2 1 6 6 N 1.46904 * 110.87295 * 260.04678 * 4 2 1 7 7 C 1.46900 * 110.99872 * 157.54582 * 6 4 2 8 8 C 1.50700 * 109.47094 * 179.97438 * 7 6 4 9 9 O 1.21301 * 119.99887 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00226 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00195 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99958 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00102 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99936 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00182 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46895 * 90.00422 * 15 13 11 17 17 H 1.48493 * 109.47345 * 210.00098 * 15 13 11 18 18 H 1.48505 * 109.46971 * 330.00730 * 15 13 11 19 19 C 1.55162 * 102.94182 * 141.61527 * 4 2 1 20 20 C 1.54912 * 101.57717 * 324.49866 * 19 4 2 21 21 N 1.47018 * 109.88200 * 238.91226 * 2 1 3 22 22 C 1.34774 * 125.65380 * 61.60226 * 21 2 1 23 23 O 1.21571 * 119.99757 * 0.02562 * 22 21 2 24 24 C 1.47691 * 120.00143 * 180.02562 * 22 21 2 25 25 C 1.39491 * 122.10125 * 179.73872 * 24 22 21 26 26 C 1.34997 * 111.67993 * 179.78120 * 25 24 22 27 27 S 1.71759 * 105.45630 * 0.42876 * 26 25 24 28 28 N 1.30607 * 122.10433 * 0.02562 * 24 22 21 29 29 H 1.08999 * 109.47045 * 298.89471 * 1 2 3 30 30 H 1.08996 * 109.47600 * 58.90248 * 1 2 3 31 31 H 1.09000 * 109.46686 * 178.90145 * 1 2 3 32 32 H 1.00897 * 110.99650 * 33.59355 * 6 4 2 33 33 H 1.08993 * 109.47330 * 300.00361 * 7 6 4 34 34 H 1.09000 * 109.46965 * 60.00477 * 7 6 4 35 35 H 0.96998 * 119.99895 * 0.02562 * 10 8 7 36 36 H 0.96997 * 119.99658 * 180.02562 * 14 13 11 37 37 H 1.08999 * 111.00577 * 82.56897 * 19 4 2 38 38 H 1.08996 * 111.00139 * 206.42665 * 19 4 2 39 39 H 1.09003 * 110.36123 * 155.85332 * 20 19 4 40 40 H 1.09001 * 110.36394 * 278.16548 * 20 19 4 41 41 H 1.07995 * 124.15822 * 359.97438 * 25 24 22 42 42 H 1.08007 * 127.27324 * 180.16970 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 1 1.3052 -1.4460 1.6181 6 7 2.4561 0.1956 2.2933 7 6 2.4440 -0.4486 3.6134 8 6 2.8606 0.5492 4.6631 9 8 3.1395 1.6855 4.3430 10 7 2.9222 0.1794 5.9577 11 6 3.3016 1.0871 6.9126 12 1 3.5508 2.0985 6.6274 13 6 3.3656 0.7057 8.2471 14 7 3.0629 -0.5252 8.5940 15 14 3.8819 1.9426 9.5483 16 1 2.6814 2.6476 10.0651 17 1 4.5584 1.2339 10.6642 18 1 4.8163 2.9296 8.9499 19 6 3.2878 -1.5141 0.6922 20 6 2.8146 -1.8792 -0.7370 21 7 2.0300 -0.7139 -1.1840 22 6 1.8074 -0.3618 -2.4657 23 8 1.1420 0.6237 -2.7186 24 6 2.3718 -1.1732 -3.5631 25 6 2.1645 -0.8523 -4.9047 26 6 2.7773 -1.7295 -5.7278 27 16 3.5382 -2.8715 -4.6949 28 7 3.0918 -2.2395 -3.3386 29 1 -0.3633 0.4966 0.8997 30 1 -0.3634 0.5307 -0.8799 31 1 -0.3633 -1.0275 -0.0197 32 1 1.8681 1.0155 2.2857 33 1 1.4391 -0.8091 3.8327 34 1 3.1394 -1.2880 3.6144 35 1 2.6988 -0.7291 6.2137 36 1 3.1073 -0.7913 9.5257 37 1 4.1655 -0.8686 0.6602 38 1 3.4854 -2.4109 1.2794 39 1 3.6718 -2.0335 -1.3924 40 1 2.1889 -2.7713 -0.7130 41 1 1.5876 -0.0044 -5.2432 42 1 2.7837 -1.7182 -6.8078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507284936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:05 Heat of formation + Delta-G solvation = -10.056384 kcal Electronic energy + Delta-G solvation = -26254.509338 eV Core-core repulsion = 22361.801913 eV Total energy + Delta-G solvation = -3892.707425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96842 -39.34197 -38.25611 -37.54029 -34.78299 -33.80062 -32.20215 -31.43514 -31.23571 -30.56760 -27.18455 -26.60001 -24.99585 -23.65722 -23.26873 -21.52486 -20.47000 -19.61460 -19.11822 -18.78271 -17.88211 -17.35578 -16.72451 -16.13012 -15.79524 -15.35237 -15.23388 -14.55191 -14.42308 -14.29071 -13.89638 -13.84282 -13.70342 -13.67161 -13.26350 -13.16789 -12.95797 -12.41260 -12.30551 -11.87706 -11.74840 -11.67403 -11.62969 -11.51400 -11.16157 -11.03590 -10.89301 -10.68297 -10.39135 -10.29463 -10.21787 -10.08545 -9.51034 -9.27187 -8.79694 -8.47467 -8.12750 -7.96355 -6.41844 -3.82581 0.17605 1.03307 1.38880 1.41820 2.67911 2.97429 3.18091 3.26833 3.33012 3.90341 4.05903 4.10662 4.28801 4.40412 4.51724 4.60762 4.89206 4.97743 5.09506 5.12264 5.15542 5.22736 5.26604 5.34556 5.38806 5.45247 5.57891 5.69199 5.81130 5.83292 5.88472 5.93926 5.98063 6.11386 6.14488 6.26468 6.29135 7.17621 7.26291 7.55378 7.58881 7.86886 8.06157 8.60990 9.17862 9.53979 10.05380 10.75859 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.001931 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.113991 B =14497.280203 C =14923.673093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.091 0.909 4 C 0.078 3.922 5 H 0.062 0.938 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.126 4.126 20 C 0.103 3.897 21 N -0.591 5.591 22 C 0.603 3.397 23 O -0.529 6.529 24 C 0.055 3.945 25 C -0.134 4.134 26 C -0.281 4.281 27 S 0.457 5.543 28 N -0.512 5.512 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.352 0.648 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.172 0.828 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -10.204 -27.161 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.109 0.891 4 C -0.033 4.033 5 H 0.080 0.920 6 N -0.289 5.289 7 C -0.081 4.081 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.165 4.165 20 C -0.020 4.020 21 N -0.324 5.324 22 C 0.387 3.613 23 O -0.405 6.405 24 C -0.119 4.119 25 C -0.166 4.166 26 C -0.430 4.430 27 S 0.613 5.387 28 N -0.347 5.347 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.190 0.810 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.387 -10.726 -26.751 28.824 hybrid contribution -1.899 1.366 0.627 2.422 sum -2.285 -9.360 -26.124 27.844 Atomic orbital electron populations 1.22175 0.94395 1.02329 1.03345 1.21727 0.94378 0.97227 0.83557 0.89108 1.22628 0.95902 0.94005 0.90748 0.92022 1.60161 1.58862 1.07715 1.02183 1.21715 1.00203 0.97361 0.88812 1.19783 0.85095 0.89156 0.83376 1.90536 1.54295 1.20856 1.80955 1.41856 1.59509 1.13687 1.04958 1.19704 1.42017 0.94911 0.86198 0.87908 1.25267 0.97534 0.96930 0.98261 1.69613 1.48905 1.17018 1.18790 0.85852 0.78794 0.79896 0.79718 1.20433 1.20932 1.19395 1.22944 0.98799 1.00812 0.93950 1.22621 0.96097 0.87589 0.95716 1.48233 1.51359 1.28550 1.04281 1.16830 0.80346 0.83612 0.80505 1.90807 1.40130 1.26628 1.82940 1.21134 1.01172 0.94672 0.94943 1.21405 1.02457 1.02549 0.90206 1.27196 1.06044 1.02785 1.07000 1.80665 1.43145 1.26569 0.88339 1.72637 1.19059 1.14877 1.28087 0.91294 0.90936 0.92524 0.82734 0.93679 0.89481 0.77461 0.91884 0.89289 0.89899 0.88300 0.91476 0.81046 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.09 37.16 0.34 -1.59 16 2 C 0.13 1.70 2.98 -66.96 -0.20 1.50 16 3 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 4 C 0.08 0.97 2.78 -65.88 -0.18 0.79 16 5 H 0.06 0.72 7.57 -51.93 -0.39 0.32 16 6 N -0.66 -10.40 5.95 -106.05 -0.63 -11.04 16 7 C 0.05 0.89 6.04 -4.98 -0.03 0.86 16 8 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 9 O -0.58 -15.81 15.78 5.54 0.09 -15.73 16 10 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 11 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 12 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 15 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.13 -1.42 6.75 -24.58 -0.17 -1.59 16 20 C 0.10 1.09 6.02 -2.53 -0.02 1.07 16 21 N -0.59 -7.33 3.06 -164.18 -0.50 -7.83 16 22 C 0.60 8.00 7.63 -12.40 -0.09 7.90 16 23 O -0.53 -8.26 15.70 5.30 0.08 -8.18 16 24 C 0.06 0.59 6.61 -84.06 -0.56 0.04 16 25 C -0.13 -1.14 9.98 -40.27 -0.40 -1.54 16 26 C -0.28 -1.58 11.40 29.58 0.34 -1.25 16 27 S 0.46 2.68 23.20 -107.50 -2.49 0.18 16 28 N -0.51 -4.81 7.90 24.85 0.20 -4.62 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.94 6.90 -51.93 -0.36 0.58 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.35 5.83 8.10 -39.29 -0.32 5.51 16 33 H 0.05 0.69 8.08 -51.93 -0.42 0.28 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.03 6.01 -51.93 -0.31 0.72 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.17 1.37 7.99 -52.49 -0.42 0.95 16 42 H 0.19 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -33.32 365.96 -8.83 -42.14 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.43 Total: 13.05 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.30 Total: 8.44 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.27 Total: -61.51 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.17 Total: -23.91 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.49 Total: 0.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.32 -8.83 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507284936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.086 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds