Wall clock time and date at job start Tue Mar 31 2020 20:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21473 * 120.00074 * 0.02562 * 5 4 2 7 7 C 1.48535 * 119.99879 * 180.02562 * 5 4 2 8 8 N 1.32466 * 119.18841 * 359.73484 * 7 5 4 9 9 C 1.32106 * 120.76855 * 179.71540 * 8 7 5 10 10 C 1.38800 * 119.16848 * 0.54872 * 9 8 7 11 11 C 1.38801 * 118.49996 * 359.72153 * 10 9 8 12 12 N 1.32111 * 119.17035 * 0.02562 * 11 10 9 13 13 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 14 14 H 1.08995 * 109.47216 * 299.99814 * 13 2 1 15 15 C 1.52999 * 109.47083 * 179.97438 * 13 2 1 16 16 N 1.46498 * 109.47065 * 59.99703 * 13 2 1 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 13 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47081 * 120.00118 * 25 23 21 28 28 H 1.48496 * 109.47496 * 240.00528 * 25 23 21 29 29 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 30 30 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 31 31 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 33 33 H 1.08004 * 120.41618 * 180.27004 * 9 8 7 34 34 H 1.07995 * 120.75030 * 179.75588 * 10 9 8 35 35 H 1.08003 * 120.41346 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47245 * 179.97438 * 15 13 2 37 37 H 1.08995 * 109.47098 * 300.00077 * 15 13 2 38 38 H 1.09003 * 109.47054 * 59.99725 * 15 13 2 39 39 H 0.97001 * 120.00384 * 25.00562 * 16 13 2 40 40 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 41 41 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 42 42 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8579 1.1601 2.4118 7 6 2.6428 -0.7186 3.5696 8 7 2.9486 -2.0052 3.4931 9 6 3.3974 -2.6573 4.5507 10 6 3.5359 -1.9802 5.7544 11 6 3.2009 -0.6340 5.7993 12 7 2.7629 -0.0424 4.7023 13 6 2.0399 -0.7211 -1.2494 14 1 1.6766 -1.7488 -1.2495 15 6 3.5699 -0.7206 -1.2498 16 7 1.5515 -0.0304 -2.4454 17 6 1.4280 -0.7013 -3.6078 18 8 1.7164 -1.8781 -3.6624 19 6 0.9315 0.0107 -4.8398 20 16 0.8761 -1.1508 -6.2268 21 6 0.2785 -0.0840 -7.4954 22 1 0.0688 0.9523 -7.2753 23 6 0.0781 -0.5753 -8.7780 24 7 0.3341 -1.8383 -9.0465 25 14 -0.5562 0.5554 -10.1228 26 1 -0.7649 1.9167 -9.5673 27 1 0.4362 0.6181 -11.2258 28 1 -1.8437 0.0306 -10.6445 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6319 1.1523 33 1 3.6490 -3.7053 4.4808 34 1 3.8967 -2.4892 6.6359 35 1 3.2972 -0.0770 6.7197 36 1 3.9332 -1.2347 -2.1396 37 1 3.9329 0.3071 -1.2499 38 1 3.9337 -1.2343 -0.3598 39 1 1.3209 0.9108 -2.4018 40 1 -0.0684 0.4029 -4.6545 41 1 1.6054 0.8329 -5.0805 42 1 0.1937 -2.1816 -9.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508497699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:15 Heat of formation + Delta-G solvation = -20.318097 kcal Electronic energy + Delta-G solvation = -25555.319769 eV Core-core repulsion = 21662.167363 eV Total energy + Delta-G solvation = -3893.152406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75626 -40.12314 -39.16981 -36.83331 -34.63148 -33.93332 -32.88885 -32.42706 -31.15743 -30.11427 -28.49721 -26.08115 -25.48547 -25.12537 -23.97763 -21.98251 -20.96893 -20.30259 -19.02383 -18.17706 -17.80981 -16.75617 -16.69517 -16.06727 -16.02366 -15.63398 -15.41982 -15.02288 -14.80219 -14.67647 -14.20596 -14.17613 -14.03249 -13.83983 -13.55897 -13.20450 -12.71716 -12.52410 -12.44869 -11.99449 -11.88001 -11.79654 -11.52685 -11.52242 -11.06815 -11.01859 -10.90498 -10.75051 -10.48857 -10.35484 -9.91779 -9.80571 -9.54257 -9.41195 -9.07744 -8.93529 -8.23515 -6.49914 -6.21888 -3.92197 -0.11762 0.45152 2.20866 2.24510 3.03505 3.07194 3.21946 3.27930 3.31792 3.33112 3.38101 3.65731 3.87498 3.93418 4.20423 4.26056 4.32928 4.40423 4.63813 4.73360 4.94505 5.08563 5.11749 5.13577 5.28619 5.32705 5.48934 5.55067 5.60970 5.65357 5.68969 5.87699 5.89278 6.01714 6.09194 6.14140 6.16893 6.27313 6.59324 6.95284 7.36765 7.60213 7.66459 7.75485 8.35643 8.58352 9.23862 10.85594 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037395 B = 0.001785 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.577061 B =15682.596743 C =16111.665101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.097 0.903 4 N -0.697 5.697 5 C 0.587 3.413 6 O -0.502 6.502 7 C 0.284 3.716 8 N -0.494 5.494 9 C 0.148 3.852 10 C -0.208 4.208 11 C 0.146 3.854 12 N -0.469 5.469 13 C 0.139 3.861 14 H 0.095 0.905 15 C -0.165 4.165 16 N -0.730 5.730 17 C 0.536 3.464 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.178 0.822 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 0.612 31.078 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.115 0.885 4 N -0.351 5.351 5 C 0.368 3.632 6 O -0.373 6.373 7 C 0.014 3.986 8 N -0.211 5.211 9 C -0.019 4.019 10 C -0.230 4.230 11 C -0.020 4.020 12 N -0.183 5.183 13 C 0.033 3.967 14 H 0.113 0.887 15 C -0.223 4.223 16 N -0.385 5.385 17 C 0.322 3.678 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.195 0.805 34 H 0.174 0.826 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.358 -0.135 30.033 30.699 hybrid contribution -0.325 1.504 0.156 1.547 sum 6.033 1.369 30.189 30.816 Atomic orbital electron populations 1.22191 0.94097 1.02997 1.02992 1.21248 0.94945 0.97646 0.82986 0.88514 1.45692 1.66116 1.14892 1.08410 1.17184 0.78621 0.85832 0.81595 1.90829 1.48091 1.14554 1.83807 1.22877 0.95063 0.87235 0.93412 1.68321 1.11040 1.08920 1.32784 1.23357 0.90252 1.00794 0.87478 1.23238 1.01577 0.97161 1.01071 1.23437 0.89813 0.92211 0.96580 1.68258 1.11579 1.39568 0.98925 1.20985 0.94461 0.97841 0.83453 0.88707 1.22205 0.94859 1.02430 1.02815 1.45936 1.69601 1.14021 1.08990 1.20297 0.76679 0.87208 0.83593 1.90702 1.48090 1.15717 1.84386 1.23537 1.03788 1.04881 0.98230 1.85385 1.86512 1.12873 0.98561 1.22916 1.50983 0.98206 0.96217 0.90847 1.24993 0.95087 0.95543 0.97971 1.70026 1.45647 1.13255 1.21376 0.86118 0.78505 0.80159 0.80721 1.19607 1.20580 1.20572 0.91844 0.90744 0.91907 0.74999 0.80475 0.82647 0.80551 0.91192 0.92362 0.91864 0.76630 0.89133 0.89144 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.33 37.16 0.35 -1.25 16 2 C 0.14 1.33 2.21 -67.93 -0.15 1.18 16 3 H 0.10 0.99 7.58 -51.93 -0.39 0.59 16 4 N -0.70 -6.57 4.37 -54.53 -0.24 -6.81 16 5 C 0.59 6.77 7.82 -12.01 -0.09 6.67 16 6 O -0.50 -7.32 16.53 5.39 0.09 -7.24 16 7 C 0.28 2.91 7.60 -157.07 -1.19 1.72 16 8 N -0.49 -3.96 9.58 -11.12 -0.11 -4.07 16 9 C 0.15 0.69 11.30 -17.23 -0.19 0.50 16 10 C -0.21 -0.70 10.18 -39.17 -0.40 -1.10 16 11 C 0.15 0.81 11.30 -17.22 -0.19 0.61 16 12 N -0.47 -4.70 10.13 -11.12 -0.11 -4.81 16 13 C 0.14 1.54 2.21 -67.93 -0.15 1.39 16 14 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 15 C -0.16 -1.78 9.32 37.16 0.35 -1.44 16 16 N -0.73 -9.17 4.38 -53.81 -0.24 -9.40 16 17 C 0.54 9.52 7.81 -10.98 -0.09 9.43 16 18 O -0.52 -11.14 15.53 5.55 0.09 -11.05 16 19 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 21 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 25 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 7.44 -51.93 -0.39 0.31 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.41 3.38 7.69 -40.82 -0.31 3.07 16 33 H 0.18 0.23 8.06 -52.48 -0.42 -0.19 16 34 H 0.16 -0.03 8.06 -52.49 -0.42 -0.46 16 35 H 0.18 0.38 8.06 -52.48 -0.42 -0.05 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 39 H 0.40 3.98 8.39 -40.82 -0.34 3.63 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -37.83 380.67 -8.20 -46.02 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.57 Total: 2.35 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.35 Total: 2.05 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.04 Total: -50.41 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.83 -8.20 -46.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508497699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.705 kcal (2) G-P(sol) polarization free energy of solvation -37.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds