Wall clock time and date at job start Tue Mar 31 2020 20:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.46775 * 179.97438 * 7 5 4 9 9 C 1.76203 * 99.99774 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00146 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99753 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00322 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99691 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47230 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46644 * 120.00651 * 13 11 9 16 16 H 1.48504 * 109.47150 * 240.00048 * 13 11 9 17 17 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 18 18 H 1.09001 * 109.47362 * 300.00732 * 17 2 1 19 19 C 1.53002 * 109.47628 * 180.02562 * 17 2 1 20 20 N 1.46506 * 109.47075 * 59.99940 * 17 2 1 21 21 C 1.34772 * 120.00614 * 205.00168 * 20 17 2 22 22 O 1.21475 * 119.99797 * 0.02562 * 21 20 17 23 23 C 1.48536 * 120.00504 * 180.02562 * 21 20 17 24 24 N 1.32454 * 119.18205 * 359.72843 * 23 21 20 25 25 C 1.32118 * 120.76996 * 179.75710 * 24 23 21 26 26 C 1.38801 * 119.15721 * 0.50894 * 25 24 23 27 27 C 1.38800 * 118.50963 * 359.75022 * 26 25 24 28 28 N 1.32108 * 119.16346 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09002 * 109.46644 * 299.99282 * 7 5 4 34 34 H 1.08999 * 109.46969 * 59.99809 * 7 5 4 35 35 H 0.97001 * 120.00140 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.46838 * 59.99718 * 19 17 2 37 37 H 1.09001 * 109.47142 * 180.02562 * 19 17 2 38 38 H 1.08996 * 109.46698 * 300.00222 * 19 17 2 39 39 H 0.97000 * 119.99761 * 25.00136 * 20 17 2 40 40 H 1.07996 * 120.42382 * 180.25792 * 25 24 23 41 41 H 1.08001 * 120.74807 * 179.76792 * 26 25 24 42 42 H 1.08002 * 120.42248 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 16 2.7106 0.4345 4.9730 9 6 3.3123 -0.6312 6.2408 10 1 3.5210 -1.6677 6.0210 11 6 3.5190 -0.1381 7.5217 12 7 3.2651 1.1254 7.7895 13 14 4.1562 -1.2680 8.8659 14 1 4.3605 -2.6304 8.3117 15 1 5.4469 -0.7450 9.3815 16 1 3.1681 -1.3265 9.9730 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7490 -1.2492 19 6 3.5700 -0.7219 -1.2489 20 7 1.5517 -0.0308 -2.4454 21 6 1.4229 -0.7030 -3.6064 22 8 1.7114 -1.8818 -3.6608 23 6 0.9283 -0.0027 -4.8193 24 7 0.6134 1.2814 -4.7404 25 6 0.1750 1.9362 -5.8008 26 6 0.0365 1.2588 -7.0044 27 6 0.3709 -0.0875 -7.0492 28 7 0.8084 -0.6790 -5.9519 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6480 -1.1214 3.3986 35 1 3.4092 1.4699 8.6848 36 1 3.9330 -1.2359 -0.3589 37 1 3.9333 -1.2354 -2.1391 38 1 3.9337 0.3056 -1.2487 39 1 1.3210 0.9104 -2.4019 40 1 -0.0763 2.9842 -5.7312 41 1 -0.3232 1.7680 -7.8864 42 1 0.2754 -0.6444 -7.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508497701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:17 Heat of formation + Delta-G solvation = -20.306573 kcal Electronic energy + Delta-G solvation = -25555.731372 eV Core-core repulsion = 21662.579466 eV Total energy + Delta-G solvation = -3893.151906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75681 -40.12268 -39.17021 -36.83335 -34.63160 -33.93285 -32.88895 -32.42751 -31.15784 -30.11461 -28.49723 -26.08065 -25.48542 -25.12610 -23.97714 -21.98192 -20.96784 -20.30330 -19.02359 -18.17733 -17.80966 -16.75582 -16.69391 -16.07261 -16.01837 -15.63612 -15.41899 -15.02278 -14.80220 -14.67728 -14.20466 -14.17685 -14.03318 -13.83882 -13.55840 -13.20461 -12.71687 -12.52477 -12.44852 -11.99464 -11.87943 -11.79680 -11.52723 -11.52151 -11.06805 -11.01885 -10.90420 -10.75061 -10.48824 -10.35506 -9.91777 -9.80575 -9.54306 -9.41150 -9.07771 -8.93590 -8.23517 -6.49920 -6.21871 -3.92208 -0.11713 0.45125 2.20866 2.24510 3.03571 3.07182 3.21937 3.27918 3.31791 3.33192 3.38076 3.65726 3.87493 3.93397 4.20408 4.26077 4.32935 4.40465 4.63801 4.73364 4.94525 5.08570 5.11748 5.13599 5.28618 5.32741 5.48937 5.55108 5.60983 5.65327 5.68927 5.87719 5.89278 6.01666 6.09192 6.14125 6.16878 6.27308 6.59316 6.95291 7.36786 7.60209 7.66480 7.75511 8.35641 8.58358 9.23875 10.85587 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.001785 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.022544 B =15679.987292 C =16108.436239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.095 0.905 4 N -0.730 5.730 5 C 0.536 3.464 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.137 3.863 18 H 0.097 0.903 19 C -0.165 4.165 20 N -0.697 5.697 21 C 0.587 3.413 22 O -0.502 6.502 23 C 0.285 3.715 24 N -0.494 5.494 25 C 0.148 3.852 26 C -0.209 4.209 27 C 0.146 3.854 28 N -0.469 5.469 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -0.626 -31.066 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.113 0.887 4 N -0.385 5.385 5 C 0.322 3.678 6 O -0.389 6.389 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.683 4.683 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.032 3.968 18 H 0.115 0.885 19 C -0.223 4.223 20 N -0.351 5.351 21 C 0.368 3.632 22 O -0.373 6.373 23 C 0.014 3.986 24 N -0.211 5.211 25 C -0.019 4.019 26 C -0.231 4.231 27 C -0.020 4.020 28 N -0.183 5.183 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.195 0.805 41 H 0.174 0.826 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.419 0.117 -30.017 30.696 hybrid contribution 0.333 -1.502 -0.158 1.547 sum -6.086 -1.385 -30.175 30.814 Atomic orbital electron populations 1.22204 0.94852 1.02431 1.02808 1.20985 0.94471 0.97840 0.83447 0.88707 1.45937 1.69568 1.13969 1.09075 1.20295 0.76701 0.87195 0.83584 1.90700 1.48170 1.15718 1.84302 1.23538 1.03754 1.04899 0.98246 1.85385 1.86377 1.12808 0.98769 1.22915 1.50868 0.98179 0.96359 0.90846 1.24991 0.95096 0.95532 0.97966 1.70026 1.45635 1.13202 1.21440 0.86120 0.78510 0.80161 0.80724 1.19605 1.20577 1.20573 1.21250 0.94946 0.97650 0.82985 0.88516 1.22193 0.94096 1.03000 1.02990 1.45693 1.66111 1.14896 1.08409 1.17184 0.78623 0.85835 0.81593 1.90830 1.48100 1.14538 1.83818 1.22871 0.95024 0.87274 0.93412 1.68320 1.11045 1.08921 1.32782 1.23358 0.90315 1.00764 0.87440 1.23238 1.01535 0.97177 1.01101 1.23436 0.89820 0.92219 0.96560 1.68255 1.11635 1.39497 0.98949 0.91856 0.91199 0.92364 0.76630 0.89140 0.89133 0.92245 0.90739 0.91843 0.91910 0.75002 0.80474 0.82649 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.33 37.16 0.35 -1.43 16 2 C 0.14 1.54 2.21 -67.93 -0.15 1.39 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.73 -9.17 4.38 -53.80 -0.24 -9.40 16 5 C 0.54 9.52 7.81 -10.98 -0.09 9.44 16 6 O -0.52 -11.14 15.52 5.56 0.09 -11.05 16 7 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 13 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 C 0.14 1.33 2.21 -67.93 -0.15 1.18 16 18 H 0.10 0.99 7.58 -51.93 -0.39 0.59 16 19 C -0.16 -1.60 9.33 37.16 0.35 -1.25 16 20 N -0.70 -6.57 4.37 -54.53 -0.24 -6.81 16 21 C 0.59 6.77 7.82 -12.01 -0.09 6.67 16 22 O -0.50 -7.33 16.53 5.39 0.09 -7.24 16 23 C 0.28 2.91 7.59 -157.08 -1.19 1.72 16 24 N -0.49 -3.96 9.57 -11.12 -0.11 -4.07 16 25 C 0.15 0.69 11.30 -17.22 -0.19 0.50 16 26 C -0.21 -0.70 10.18 -39.17 -0.40 -1.10 16 27 C 0.15 0.81 11.30 -17.22 -0.19 0.61 16 28 N -0.47 -4.70 10.13 -11.12 -0.11 -4.81 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 3.98 8.39 -40.82 -0.34 3.64 16 33 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 3.39 7.69 -40.82 -0.31 3.07 16 40 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 41 H 0.16 -0.03 8.06 -52.49 -0.42 -0.46 16 42 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -37.83 380.67 -8.20 -46.02 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.57 Total: 2.35 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.35 Total: 2.05 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.04 Total: -50.41 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.83 -8.20 -46.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508497701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.716 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds