Wall clock time and date at job start Tue Mar 31 2020 20:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47115 * 2 1 4 4 C 1.53002 * 109.47251 * 119.99449 * 2 1 3 5 5 N 1.46494 * 109.47001 * 175.00022 * 4 2 1 6 6 C 1.34784 * 119.99635 * 180.02562 * 5 4 2 7 7 O 1.21512 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.48157 * 119.99579 * 179.97438 * 6 5 4 9 9 C 1.39720 * 120.17913 * 180.02562 * 8 6 5 10 10 C 1.38820 * 117.89854 * 180.02562 * 9 8 6 11 11 C 1.38571 * 118.06899 * 359.97438 * 10 9 8 12 12 N 1.32170 * 120.06764 * 359.97438 * 11 10 9 13 13 N 1.28357 * 122.29842 * 359.75702 * 12 11 10 14 14 N 1.46500 * 109.47406 * 239.99843 * 2 1 3 15 15 C 1.46495 * 119.99676 * 300.00391 * 14 2 1 16 16 C 1.34778 * 120.00033 * 119.99516 * 14 2 1 17 17 O 1.21275 * 120.00245 * 0.02562 * 16 14 2 18 18 C 1.50700 * 119.99565 * 180.02562 * 16 14 2 19 19 S 1.81000 * 109.46685 * 180.02562 * 18 16 14 20 20 C 1.76206 * 99.99918 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99890 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99820 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00243 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47236 * 59.99717 * 24 22 20 26 26 H 1.48496 * 109.47533 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47102 * 300.00107 * 24 22 20 28 28 H 1.08994 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47078 * 300.00810 * 1 2 3 30 30 H 1.08998 * 109.46958 * 60.00372 * 1 2 3 31 31 H 1.09005 * 109.46767 * 55.00088 * 4 2 1 32 32 H 1.09002 * 109.47113 * 295.00428 * 4 2 1 33 33 H 0.96995 * 120.00292 * 0.27801 * 5 4 2 34 34 H 1.08007 * 121.05028 * 359.97438 * 9 8 6 35 35 H 1.08002 * 120.96640 * 180.02562 * 10 9 8 36 36 H 1.08004 * 119.96457 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.47882 * 89.99728 * 15 14 2 38 38 H 1.09005 * 109.47151 * 209.99952 * 15 14 2 39 39 H 1.09004 * 109.47439 * 329.99129 * 15 14 2 40 40 H 1.09003 * 109.47319 * 300.00127 * 18 16 14 41 41 H 1.08999 * 109.47345 * 60.00596 * 18 16 14 42 42 H 0.97001 * 119.99555 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1730 -1.4290 2.1908 7 8 3.5687 -1.8856 3.1410 8 6 5.6495 -1.5358 2.1312 9 6 6.3509 -2.1603 3.1657 10 6 7.7333 -2.2335 3.0615 11 6 8.3326 -1.6842 1.9393 12 7 7.5919 -1.1119 1.0062 13 7 6.3130 -1.0440 1.0915 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0356 -2.0833 17 8 3.0865 1.1254 -1.8913 18 6 3.2951 -0.7460 -3.3140 19 16 4.3013 0.3915 -4.2989 20 6 4.7427 -0.6691 -5.6350 21 1 4.3917 -1.6902 -5.6525 22 6 5.5424 -0.1923 -6.6644 23 7 5.9707 1.0522 -6.6428 24 14 6.0110 -1.3168 -8.0805 25 1 4.7811 -1.7847 -8.7689 26 1 6.8633 -0.5728 -9.0424 27 1 6.7604 -2.4868 -7.5565 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1581 2.1370 33 1 3.9827 -0.4588 0.4337 34 1 5.8340 -2.5723 4.0199 35 1 8.3244 -2.7057 3.8322 36 1 9.4060 -1.7244 1.8267 37 1 0.7376 -2.1445 -1.9993 38 1 2.4629 -2.5819 -1.9862 39 1 1.5296 -2.5969 -0.4707 40 1 3.9005 -1.6026 -3.0176 41 1 2.4471 -1.0882 -3.9073 42 1 6.5293 1.3854 -7.3624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509031724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:30 Heat of formation + Delta-G solvation = -32.829107 kcal Electronic energy + Delta-G solvation = -26593.308530 eV Core-core repulsion = 22699.613606 eV Total energy + Delta-G solvation = -3893.694924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26411 -41.25015 -40.31149 -37.75487 -35.50911 -34.57076 -34.21426 -33.94142 -32.94570 -30.21120 -28.01799 -27.85181 -27.64222 -25.96370 -25.49616 -22.91706 -22.13006 -20.53127 -19.63475 -19.37062 -18.49145 -18.33419 -17.69240 -17.20401 -16.91227 -16.87050 -16.79251 -16.60655 -16.03071 -15.79924 -15.46272 -14.88017 -14.60828 -14.55187 -14.51723 -14.19048 -13.93960 -13.82807 -13.47282 -13.29471 -13.15575 -13.07012 -12.87444 -12.81952 -12.63474 -12.60039 -12.00030 -11.71445 -11.35315 -11.34144 -11.26516 -11.11765 -10.88199 -10.82883 -10.27966 -10.24790 -9.75379 -8.64062 -8.32942 -6.10491 -0.62863 -0.27322 1.25743 1.43684 1.45125 1.48354 1.54970 1.56318 1.82559 2.09982 2.28713 2.55747 2.75651 3.00904 3.27352 3.40405 3.53452 3.57875 3.74265 3.80724 3.90956 4.04877 4.12058 4.14001 4.23111 4.26830 4.46344 4.54022 4.61113 4.68449 4.72347 4.77449 4.82853 4.90510 5.03456 5.13553 5.14722 5.30347 5.42100 5.56509 6.15779 6.20177 6.23030 6.80729 7.07967 7.12734 7.48889 8.76058 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.003544 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.726681 B = 7898.969929 C =10169.716147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 H 0.084 0.916 4 C 0.111 3.889 5 N -0.705 5.705 6 C 0.578 3.422 7 O -0.550 6.550 8 C -0.001 4.001 9 C -0.072 4.072 10 C -0.096 4.096 11 C 0.056 3.944 12 N -0.283 5.283 13 N -0.246 5.246 14 N -0.605 5.605 15 C 0.070 3.930 16 C 0.534 3.466 17 O -0.559 6.559 18 C -0.124 4.124 19 S -0.146 6.146 20 C -0.548 4.548 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.181 0.819 35 H 0.210 0.790 36 H 0.215 0.785 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 -11.936 22.565 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.102 0.898 4 C -0.012 4.012 5 N -0.354 5.354 6 C 0.361 3.639 7 O -0.428 6.428 8 C -0.148 4.148 9 C -0.101 4.101 10 C -0.125 4.125 11 C -0.107 4.107 12 N -0.125 5.125 13 N -0.092 5.092 14 N -0.339 5.339 15 C -0.072 4.072 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.275 4.275 19 S 0.081 5.919 20 C -0.696 4.696 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.186 1.186 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.244 0.756 34 H 0.198 0.802 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.501 -9.627 21.976 24.411 hybrid contribution 0.467 -1.927 -0.420 2.027 sum -4.035 -11.554 21.556 24.788 Atomic orbital electron populations 1.21997 0.90832 1.04197 1.03544 1.21436 0.96894 0.97195 0.82521 0.89774 1.21997 0.78284 1.02703 0.98264 1.45975 1.08913 1.57299 1.23261 1.17695 0.85441 0.78236 0.82481 1.90758 1.68905 1.49437 1.33663 1.22953 0.96246 1.00397 0.95224 1.22742 0.95677 0.93488 0.98170 1.23019 0.94192 0.96186 0.99112 1.25292 1.04424 0.90827 0.90132 1.73164 0.98940 1.14102 1.26327 1.73266 1.03312 1.12479 1.20115 1.47891 1.50374 1.13652 1.22033 1.22032 1.01995 0.79493 1.03650 1.20090 0.77642 0.86242 0.83892 1.90690 1.58161 1.18312 1.76511 1.23362 1.03605 1.03012 0.97512 1.85556 1.63438 1.19221 1.23680 1.23157 1.37660 1.00054 1.08683 0.90151 1.26098 0.94725 0.97149 1.00986 1.70181 1.33961 1.16621 1.33913 0.85040 0.78634 0.77813 0.76730 1.18562 1.20279 1.18807 0.89908 0.89083 0.92586 0.88929 0.88732 0.75624 0.80196 0.77282 0.76799 0.90399 0.91186 0.88853 0.88107 0.87564 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.19 71.98 0.66 -1.52 16 2 C 0.12 2.66 2.80 44.99 0.13 2.78 16 3 H 0.08 2.33 6.90 -2.38 -0.02 2.31 16 4 C 0.11 2.16 4.92 86.38 0.42 2.58 16 5 N -0.70 -18.06 5.38 -465.67 -2.50 -20.57 16 6 C 0.58 15.14 7.82 86.88 0.68 15.82 16 7 O -0.55 -15.17 16.39 -3.75 -0.06 -15.23 16 8 C 0.00 -0.02 6.83 42.00 0.29 0.26 16 9 C -0.07 -1.19 9.73 22.77 0.22 -0.96 16 10 C -0.10 -1.02 10.20 22.49 0.23 -0.79 16 11 C 0.06 0.91 11.31 84.72 0.96 1.86 16 12 N -0.28 -8.08 11.51 -57.15 -0.66 -8.74 16 13 N -0.25 -7.63 10.75 -48.49 -0.52 -8.15 16 14 N -0.60 -15.59 2.25 -822.57 -1.85 -17.44 16 15 C 0.07 1.28 9.30 127.77 1.19 2.47 16 16 C 0.53 20.05 7.40 87.66 0.65 20.70 16 17 O -0.56 -25.87 15.19 -3.01 -0.05 -25.92 16 18 C -0.12 -5.09 4.71 71.24 0.34 -4.76 16 19 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 20 C -0.55 -31.94 9.50 67.95 0.65 -31.30 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 22 C 0.02 0.88 5.49 84.86 0.47 1.35 16 23 N -0.91 -56.86 13.22 21.65 0.29 -56.57 16 24 Si 1.00 44.29 29.55 68.60 2.03 46.31 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.08 0.90 7.67 -2.39 -0.02 0.88 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.51 6.88 -2.38 -0.02 1.49 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 12.54 7.23 -92.71 -0.67 11.87 16 34 H 0.18 2.19 7.72 -2.91 -0.02 2.17 16 35 H 0.21 0.00 8.06 -2.91 -0.02 -0.02 16 36 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.40 6.44 -2.38 -0.02 1.38 16 39 H 0.09 1.27 6.53 -2.39 -0.02 1.25 16 40 H 0.10 3.89 7.40 -2.39 -0.02 3.87 16 41 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -87.24 375.01 2.77 -84.47 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.39 Total: 22.80 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.87 Total: 8.50 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -5.24 Total: -111.46 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.11 Total: -41.15 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -87.24 2.77 -84.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509031724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.638 kcal (2) G-P(sol) polarization free energy of solvation -87.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds