Wall clock time and date at job start Tue Mar 31 2020 20:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46500 * 109.47423 * 174.99786 * 4 2 1 6 6 C 1.34773 * 119.99939 * 179.97438 * 5 4 2 7 7 O 1.21516 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.48137 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.40110 * 121.14430 * 179.72244 * 8 6 5 10 10 C 1.38511 * 117.81836 * 179.73524 * 9 8 6 11 11 N 1.31913 * 119.96872 * 0.54146 * 10 9 8 12 12 N 1.28276 * 122.51568 * 359.71731 * 11 10 9 13 13 C 1.31920 * 122.32599 * 0.02562 * 12 11 10 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46882 * 59.99910 * 24 22 20 26 26 H 1.48501 * 109.47377 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47309 * 300.00007 * 24 22 20 28 28 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 29 29 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 0.96993 * 119.99749 * 0.02562 * 5 4 2 34 34 H 1.07999 * 121.09127 * 359.97438 * 9 8 6 35 35 H 1.08003 * 120.01063 * 180.23661 * 10 9 8 36 36 H 1.08007 * 120.16699 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 38 38 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 39 39 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 40 40 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 41 41 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 42 42 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1910 7 8 3.5688 -1.8844 3.1415 8 6 5.6495 -1.5343 2.1319 9 6 6.3736 -2.1500 3.1613 10 6 7.7511 -2.2160 3.0326 11 7 8.3393 -1.6988 1.9711 12 7 7.6826 -1.1292 1.0279 13 6 6.3683 -1.0182 1.0506 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 4.7755 -1.7889 -8.7696 26 1 6.8515 -0.5678 -9.0496 27 1 6.7605 -2.4792 -7.5595 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4622 0.4318 34 1 5.8737 -2.5630 4.0250 35 1 8.3438 -2.6862 3.8034 36 1 5.8505 -0.5319 0.2370 37 1 2.4158 -2.7376 -0.9719 38 1 0.6904 -2.3001 -0.9849 39 1 1.6238 -2.2850 -2.5004 40 1 3.9044 -1.5994 -3.0178 41 1 2.4471 -1.0921 -3.9049 42 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509115276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:40 Heat of formation + Delta-G solvation = -4.708647 kcal Electronic energy + Delta-G solvation = -26610.750510 eV Core-core repulsion = 22718.274981 eV Total energy + Delta-G solvation = -3892.475529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50525 -40.25728 -39.38034 -36.70768 -34.65015 -33.59334 -32.96675 -32.46135 -32.05228 -28.86007 -27.39137 -26.99368 -25.52698 -25.20858 -24.69694 -21.91576 -21.28161 -19.42838 -18.48929 -17.99983 -17.80077 -17.08982 -16.71210 -16.30733 -15.88353 -15.85005 -15.46747 -15.25333 -14.88368 -14.82768 -14.25069 -14.08901 -13.77796 -13.54031 -13.33996 -13.27464 -13.10442 -12.64619 -12.48452 -12.37907 -12.13858 -11.95228 -11.30553 -11.21232 -11.07921 -11.06020 -10.83052 -10.79408 -10.59203 -10.46541 -9.94566 -9.86064 -9.60365 -9.44728 -9.08994 -8.77760 -8.30115 -6.55631 -6.24887 -3.96564 -0.02589 0.53558 2.39340 2.55274 2.77919 2.83275 3.21705 3.22720 3.27381 3.31355 3.50202 3.74901 3.94144 4.15465 4.16717 4.20183 4.31786 4.46949 4.69651 4.90538 4.91731 4.97113 4.98366 5.10615 5.18434 5.20438 5.31929 5.32570 5.39735 5.43654 5.48529 5.60835 5.73017 5.76110 5.78784 5.85112 5.97971 6.04054 6.45235 6.98881 7.30975 7.55977 7.66473 8.31244 8.34155 8.34241 9.20661 10.82403 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.003540 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.636640 B = 7907.179071 C =10201.290440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.111 0.889 4 C 0.112 3.888 5 N -0.712 5.712 6 C 0.565 3.435 7 O -0.530 6.530 8 C -0.136 4.136 9 C -0.058 4.058 10 C 0.034 3.966 11 N -0.225 5.225 12 N -0.231 5.231 13 C 0.076 3.924 14 N -0.621 5.621 15 C 0.077 3.923 16 C 0.531 3.469 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.076 3.924 23 N -0.866 5.866 24 Si 0.917 3.083 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.176 0.824 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -7.711 19.437 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.129 0.871 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.350 3.650 7 O -0.407 6.407 8 C -0.151 4.151 9 C -0.088 4.088 10 C -0.130 4.130 11 N -0.067 5.067 12 N -0.072 5.072 13 C -0.089 4.089 14 N -0.358 5.358 15 C -0.066 4.066 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.303 4.303 19 S 0.169 5.831 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.134 4.134 23 N -0.501 5.501 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.243 0.757 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.372 -5.847 19.465 21.299 hybrid contribution -1.247 -2.322 -0.801 2.755 sum -7.619 -8.169 18.664 21.751 Atomic orbital electron populations 1.22052 0.93540 1.02744 1.03263 1.21312 0.95110 0.98616 0.83220 0.87059 1.21858 0.79071 1.01853 0.98486 1.45842 1.08382 1.58805 1.23411 1.17871 0.85966 0.78427 0.82709 1.90787 1.69248 1.47679 1.32951 1.21217 0.95331 1.01422 0.97124 1.22616 0.94818 0.93178 0.98220 1.24446 0.93130 0.97385 0.98019 1.72980 1.32199 1.03420 0.98109 1.73209 1.06584 1.09541 1.17868 1.24685 0.92896 0.94403 0.96888 1.47996 1.52267 1.12737 1.22808 1.21776 1.00673 0.81304 1.02875 1.20491 0.77114 0.86817 0.83674 1.90717 1.56379 1.16143 1.75510 1.23583 1.04415 1.04815 0.97482 1.85387 1.61189 1.14841 1.21693 1.22795 1.37828 0.99547 1.08415 0.91019 1.24970 0.94990 0.95514 0.97904 1.69994 1.33159 1.14256 1.32729 0.86245 0.78575 0.80092 0.80729 1.19962 1.20761 1.19888 0.91217 0.91921 0.91062 0.89911 0.90631 0.75661 0.81968 0.80231 0.80671 0.92825 0.91046 0.90383 0.89260 0.89136 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.17 37.16 0.34 -0.81 16 2 C 0.12 1.15 2.80 -67.93 -0.19 0.96 16 3 H 0.11 1.27 6.90 -51.93 -0.36 0.91 16 4 C 0.11 0.97 4.97 -4.04 -0.02 0.95 16 5 N -0.71 -7.20 5.35 -61.16 -0.33 -7.53 16 6 C 0.57 6.29 7.80 -12.20 -0.10 6.20 16 7 O -0.53 -7.00 16.49 5.35 0.09 -6.91 16 8 C -0.14 -1.44 5.92 -104.58 -0.62 -2.06 16 9 C -0.06 -0.51 9.77 -38.78 -0.38 -0.89 16 10 C 0.03 0.30 11.30 -17.42 -0.20 0.10 16 11 N -0.22 -2.85 11.48 30.53 0.35 -2.50 16 12 N -0.23 -3.27 11.49 30.78 0.35 -2.92 16 13 C 0.08 0.91 10.84 -16.96 -0.18 0.72 16 14 N -0.62 -7.04 2.24 -173.93 -0.39 -7.43 16 15 C 0.08 0.67 9.40 59.84 0.56 1.24 16 16 C 0.53 8.61 7.40 -10.98 -0.08 8.53 16 17 O -0.51 -10.12 15.19 5.56 0.08 -10.03 16 18 C -0.15 -2.81 4.71 36.01 0.17 -2.64 16 19 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 20 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 21 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 22 C 0.08 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 24 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.38 6.66 -51.93 -0.35 0.04 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 33 H 0.41 4.35 6.02 -40.82 -0.25 4.10 16 34 H 0.16 1.09 7.80 -52.49 -0.41 0.68 16 35 H 0.18 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.18 1.93 6.54 -52.48 -0.34 1.59 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 39 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 40 H 0.09 1.53 8.11 -51.92 -0.42 1.11 16 41 H 0.09 1.57 7.39 -51.92 -0.38 1.18 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -35.69 372.86 -6.46 -42.15 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.24 Total: 2.31 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.49 Total: -0.22 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.72 Total: -45.27 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.17 Total: -16.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.69 -6.46 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509115276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.442 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds