Wall clock time and date at job start Tue Mar 31 2020 20:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47628 * 2 1 4 4 C 1.53004 * 109.47258 * 239.99300 * 2 1 3 5 5 N 1.46500 * 109.46816 * 185.00142 * 4 2 1 6 6 C 1.46497 * 120.00431 * 269.99740 * 5 4 2 7 7 C 1.34781 * 119.99897 * 90.00764 * 5 4 2 8 8 O 1.21283 * 119.99774 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00043 * 179.97438 * 7 5 4 10 10 S 1.80994 * 109.47076 * 179.97438 * 9 7 5 11 11 C 1.76203 * 100.00010 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99994 * 359.97438 * 11 10 9 13 13 C 1.38806 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99859 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99928 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46998 * 59.99413 * 15 13 11 17 17 H 1.48489 * 109.47059 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46996 * 300.00154 * 15 13 11 19 19 N 1.46504 * 109.46985 * 119.99690 * 2 1 3 20 20 C 1.34780 * 119.99831 * 275.00123 * 19 2 1 21 21 O 1.21517 * 120.00086 * 359.97438 * 20 19 2 22 22 C 1.48154 * 119.99863 * 179.97438 * 20 19 2 23 23 C 1.39434 * 120.09522 * 179.97438 * 22 20 19 24 24 N 1.32083 * 119.87055 * 179.76338 * 23 22 20 25 25 C 1.32130 * 120.07345 * 0.51460 * 24 23 22 26 26 C 1.38732 * 120.19355 * 359.48336 * 25 24 23 27 27 N 1.31798 * 120.12697 * 0.25503 * 26 25 24 28 28 H 1.09000 * 109.46702 * 60.00640 * 1 2 3 29 29 H 1.08995 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47323 * 300.00873 * 1 2 3 31 31 H 1.08994 * 109.47128 * 305.00555 * 4 2 1 32 32 H 1.09000 * 109.46513 * 65.00481 * 4 2 1 33 33 H 1.09006 * 109.46797 * 90.00129 * 6 5 4 34 34 H 1.08994 * 109.47583 * 210.00704 * 6 5 4 35 35 H 1.09000 * 109.46813 * 330.00758 * 6 5 4 36 36 H 1.09008 * 109.46889 * 299.99578 * 9 7 5 37 37 H 1.08999 * 109.47602 * 59.99359 * 9 7 5 38 38 H 0.97003 * 119.99609 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00168 * 94.99862 * 19 2 1 40 40 H 1.08004 * 120.06363 * 0.02562 * 23 22 20 41 41 H 1.08002 * 119.90689 * 179.76717 * 25 24 23 42 42 H 1.08001 * 119.93472 * 180.28389 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.3344 0.2338 -1.7611 7 6 4.0757 -1.8988 -0.6113 8 8 3.3850 -2.7765 -0.1385 9 6 5.5776 -2.0073 -0.5513 10 16 6.0386 -3.5471 0.2807 11 6 7.7945 -3.4183 0.2119 12 1 8.2551 -2.5589 -0.2525 13 6 8.5858 -4.4218 0.7538 14 7 8.0244 -5.4694 1.3194 15 14 10.4474 -4.2855 0.6802 16 1 10.8826 -3.0594 1.3961 17 1 11.0567 -5.4768 1.3241 18 1 10.8827 -4.2116 -0.7377 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0181 2.3572 21 8 1.8584 1.1610 2.4116 22 6 2.6402 -0.7166 3.5671 23 6 2.7746 -0.0227 4.7690 24 7 3.2104 -0.6510 5.8461 25 6 3.5280 -1.9319 5.7824 26 6 3.3954 -2.6251 4.5880 27 7 2.9565 -2.0072 3.5097 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.6054 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1369 33 1 4.5401 0.9846 -0.9982 34 1 5.2735 -0.1928 -2.1136 35 1 3.8104 0.6985 -2.5963 36 1 5.9827 -2.0053 -1.5633 37 1 5.9813 -1.1601 0.0032 38 1 8.5774 -6.1704 1.6984 39 1 2.2490 -1.6317 1.1528 40 1 2.5189 1.0253 4.8203 41 1 3.8876 -2.4420 6.6638 42 1 3.6519 -3.6732 4.5418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510460066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:14 Heat of formation + Delta-G solvation = -17.238047 kcal Electronic energy + Delta-G solvation = -27262.648252 eV Core-core repulsion = 23369.629408 eV Total energy + Delta-G solvation = -3893.018845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23856 -40.04612 -38.96453 -36.24154 -34.78490 -34.33469 -32.46456 -31.97942 -30.96168 -29.49273 -27.32065 -25.74795 -25.57176 -25.20301 -24.52118 -22.09701 -20.54702 -19.41188 -18.28976 -17.66708 -17.59508 -16.87610 -16.66543 -16.24110 -15.82816 -15.54578 -15.29610 -14.83847 -14.75200 -14.27829 -14.05895 -13.95780 -13.57344 -13.24284 -12.98847 -12.90079 -12.79081 -12.56267 -12.47905 -12.28396 -11.89784 -11.81912 -11.67577 -11.32328 -11.24277 -11.07774 -11.07290 -10.80096 -10.34545 -9.85274 -9.52126 -9.47592 -9.13850 -9.10104 -9.09122 -8.59370 -8.26984 -6.52595 -6.25579 -3.95309 0.35785 1.04279 2.70046 2.82209 2.94436 3.06215 3.20234 3.23246 3.25890 3.56042 3.77965 3.99307 4.12995 4.17038 4.40234 4.64464 4.72509 4.83408 4.98358 5.09064 5.09750 5.12030 5.13513 5.17735 5.26762 5.39862 5.49032 5.51430 5.52628 5.62940 5.67480 5.83817 5.85092 6.02982 6.08585 6.22777 6.39382 6.58617 7.08979 7.41150 7.47044 7.55731 7.72123 8.16007 8.31119 8.46388 9.20177 10.81577 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.004304 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.129675 B = 6504.647534 C = 8616.451717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.089 0.911 4 C 0.107 3.893 5 N -0.624 5.624 6 C 0.080 3.920 7 C 0.537 3.463 8 O -0.514 6.514 9 C -0.152 4.152 10 S -0.052 6.052 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.916 3.084 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.698 5.698 20 C 0.577 3.423 21 O -0.541 6.541 22 C 0.024 3.976 23 C 0.102 3.898 24 N -0.444 5.444 25 C 0.070 3.930 26 C 0.063 3.937 27 N -0.394 5.394 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.269 0.731 39 H 0.425 0.575 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 10.666 -0.520 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.107 0.893 4 C -0.017 4.017 5 N -0.359 5.359 6 C -0.064 4.064 7 C 0.326 3.674 8 O -0.388 6.388 9 C -0.302 4.302 10 S 0.174 5.826 11 C -0.685 4.685 12 H 0.088 0.912 13 C -0.133 4.133 14 N -0.503 5.503 15 Si 0.742 3.258 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.354 5.354 20 C 0.361 3.639 21 O -0.419 6.419 22 C -0.117 4.117 23 C -0.058 4.058 24 N -0.158 5.158 25 C -0.090 4.090 26 C -0.100 4.100 27 N -0.111 5.111 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.267 0.733 40 H 0.196 0.804 41 H 0.193 0.807 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.801 10.032 0.236 17.064 hybrid contribution 2.337 0.697 -0.641 2.522 sum -11.464 10.729 -0.404 15.707 Atomic orbital electron populations 1.22127 0.94480 1.02651 1.02763 1.21501 0.94412 0.97823 0.84574 0.89255 1.21808 0.80628 1.02597 0.96675 1.47857 1.05916 1.22084 1.60055 1.21802 0.95855 0.90484 0.98231 1.20357 0.90379 0.80321 0.76355 1.90621 1.64315 1.38747 1.45143 1.23559 0.93536 1.07658 1.05452 1.85318 1.05348 1.18000 1.73907 1.22835 0.91297 1.09754 1.44656 0.91153 1.24950 0.99419 0.94464 0.94503 1.69998 1.35952 1.08595 1.35712 0.86271 0.83184 0.77794 0.78559 1.19988 1.20762 1.19918 1.46240 1.64693 1.16200 1.08253 1.17704 0.77657 0.85846 0.82702 1.90751 1.51288 1.14931 1.84929 1.22184 1.01474 0.92156 0.95865 1.23738 0.92809 1.01604 0.87659 1.68594 1.08368 1.09483 1.29360 1.24135 0.94316 0.91028 0.99569 1.23998 0.95063 1.02420 0.88468 1.68488 1.04922 1.07691 1.30018 0.91339 0.91985 0.91720 0.89019 0.88959 0.92791 0.90551 0.91151 0.89301 0.89569 0.92164 0.73280 0.80441 0.80652 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.12 1.43 2.88 -67.93 -0.20 1.23 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C 0.11 1.15 5.19 -4.04 -0.02 1.13 16 5 N -0.62 -8.22 2.77 -181.57 -0.50 -8.72 16 6 C 0.08 0.80 10.29 59.85 0.62 1.42 16 7 C 0.54 9.55 6.99 -10.98 -0.08 9.47 16 8 O -0.51 -10.46 13.18 5.55 0.07 -10.39 16 9 C -0.15 -3.01 4.71 36.00 0.17 -2.84 16 10 S -0.05 -1.36 20.57 -107.50 -2.21 -3.58 16 11 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 12 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 13 C 0.08 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -25.35 13.22 55.49 0.73 -24.62 16 15 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 N -0.70 -10.30 4.47 -54.65 -0.24 -10.54 16 20 C 0.58 9.08 7.78 -12.19 -0.09 8.98 16 21 O -0.54 -9.01 16.01 5.35 0.09 -8.92 16 22 C 0.02 0.38 6.75 -82.84 -0.56 -0.18 16 23 C 0.10 1.41 10.77 -17.00 -0.18 1.23 16 24 N -0.44 -5.95 10.49 -12.71 -0.13 -6.09 16 25 C 0.07 0.82 11.23 -17.24 -0.19 0.63 16 26 C 0.06 0.84 11.22 -17.38 -0.20 0.65 16 27 N -0.39 -6.35 9.71 -9.61 -0.09 -6.44 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 32 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 35 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.09 1.64 7.40 -51.91 -0.38 1.25 16 37 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.42 7.07 5.17 -40.82 -0.21 6.86 16 40 H 0.18 2.18 7.65 -52.48 -0.40 1.77 16 41 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -34.96 373.94 -7.30 -42.26 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.43 Total: 7.50 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.18 Total: 7.88 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.24 Total: -56.41 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.96 -7.30 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510460066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.019 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds