Wall clock time and date at job start Tue Mar 31 2020 20:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.46502 * 120.00163 * 269.99690 * 5 4 2 7 7 C 1.34774 * 120.00242 * 90.00555 * 5 4 2 8 8 O 1.21286 * 119.99601 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00803 * 179.97438 * 7 5 4 10 10 S 1.80998 * 109.47579 * 179.97438 * 9 7 5 11 11 C 1.76204 * 99.99925 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00063 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99619 * 180.02562 * 11 10 9 14 14 N 1.31624 * 120.00456 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99619 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47337 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47230 * 120.00138 * 15 13 11 18 18 H 1.48498 * 109.47184 * 240.00007 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21474 * 120.00171 * 0.02562 * 20 19 2 22 22 C 1.48538 * 120.00066 * 180.02562 * 20 19 2 23 23 N 1.32460 * 119.18323 * 359.72218 * 22 20 19 24 24 C 1.32119 * 120.76651 * 179.76425 * 23 22 20 25 25 C 1.38794 * 119.16434 * 0.50426 * 24 23 22 26 26 C 1.38808 * 118.50649 * 359.75312 * 25 24 23 27 27 N 1.32107 * 119.16162 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 33 33 H 1.09006 * 109.46878 * 90.00324 * 6 5 4 34 34 H 1.09000 * 109.47249 * 209.99908 * 6 5 4 35 35 H 1.08998 * 109.47277 * 330.00800 * 6 5 4 36 36 H 1.09005 * 109.46648 * 300.00169 * 9 7 5 37 37 H 1.09005 * 109.46985 * 59.98988 * 9 7 5 38 38 H 0.96996 * 120.00528 * 180.02562 * 14 13 11 39 39 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 40 40 H 1.07999 * 120.41651 * 180.26426 * 24 23 22 41 41 H 1.08003 * 120.74857 * 179.77315 * 25 24 23 42 42 H 1.08002 * 120.41699 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2343 -1.7613 7 6 4.0759 -1.8985 -0.6117 8 8 3.3852 -2.7763 -0.1390 9 6 5.5777 -2.0069 -0.5518 10 16 6.0389 -3.5469 0.2801 11 6 7.7948 -3.4179 0.2111 12 1 8.2553 -2.5585 -0.2533 13 6 8.5861 -4.4214 0.7528 14 7 8.0249 -5.4691 1.3184 15 14 10.4476 -4.2850 0.6791 16 1 10.8248 -3.0208 -0.0026 17 1 10.9991 -4.2868 2.0580 18 1 10.9990 -5.4387 -0.0760 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8577 1.1601 2.4118 22 6 2.6426 -0.7185 3.5698 23 7 2.9482 -2.0051 3.4932 24 6 3.3961 -2.6574 4.5512 25 6 3.5346 -1.9802 5.7548 26 6 3.2001 -0.6338 5.7996 27 7 2.7634 -0.0421 4.7022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2953 32 1 1.7517 -0.1582 -2.1370 33 1 4.5400 0.9850 -0.9982 34 1 5.2735 -0.1922 -2.1137 35 1 3.8103 0.6991 -2.5963 36 1 5.9828 -2.0048 -1.5638 37 1 5.9813 -1.1597 0.0028 38 1 8.5778 -6.1702 1.6972 39 1 2.2491 -1.6318 1.1525 40 1 3.6476 -3.7054 4.4813 41 1 3.8950 -2.4893 6.6365 42 1 3.2964 -0.0768 6.7199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510461151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:24 Heat of formation + Delta-G solvation = -11.433691 kcal Electronic energy + Delta-G solvation = -27279.959776 eV Core-core repulsion = 23387.192626 eV Total energy + Delta-G solvation = -3892.767149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17715 -39.99734 -38.86153 -36.18355 -34.70270 -33.77100 -32.46629 -32.46024 -31.00224 -29.47207 -27.28859 -25.73712 -25.55572 -25.16255 -24.51542 -22.07106 -20.54447 -19.40542 -18.45811 -17.66633 -17.56100 -16.68673 -16.27907 -16.12101 -15.79825 -15.40228 -15.35351 -14.83916 -14.77141 -14.18950 -13.98589 -13.78965 -13.56266 -13.49760 -13.19992 -12.93878 -12.76313 -12.53627 -12.43751 -12.24980 -11.86639 -11.77401 -11.30384 -11.17409 -11.10521 -11.04739 -10.89647 -10.78652 -10.00425 -9.82905 -9.77362 -9.44838 -9.28869 -9.10728 -9.06599 -8.56346 -8.25181 -6.51784 -6.25751 -3.94944 0.46083 1.07144 2.70030 2.79240 2.93667 2.97657 3.17966 3.23596 3.27994 3.57649 3.89978 3.99988 4.17043 4.28118 4.53817 4.68186 4.78097 4.88437 5.01516 5.01869 5.09749 5.12412 5.15935 5.20976 5.30025 5.42920 5.53593 5.55288 5.66178 5.69536 5.70477 5.86969 5.88144 6.07041 6.10628 6.23072 6.43260 6.62305 6.89317 7.44210 7.52186 7.56638 7.96510 8.25294 8.31828 8.49472 9.20396 10.81544 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.004307 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.513354 B = 6500.181108 C = 8585.021419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.090 0.910 4 C 0.107 3.893 5 N -0.624 5.624 6 C 0.080 3.920 7 C 0.537 3.463 8 O -0.513 6.513 9 C -0.151 4.151 10 S -0.053 6.053 11 C -0.535 4.535 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.916 3.084 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.279 1.279 19 N -0.698 5.698 20 C 0.586 3.414 21 O -0.519 6.519 22 C 0.277 3.723 23 N -0.475 5.475 24 C 0.157 3.843 25 C -0.208 4.208 26 C 0.138 3.862 27 N -0.474 5.474 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.267 0.733 39 H 0.425 0.575 40 H 0.180 0.820 41 H 0.154 0.846 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 9.723 1.023 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.108 0.892 4 C -0.017 4.017 5 N -0.359 5.359 6 C -0.064 4.064 7 C 0.326 3.674 8 O -0.388 6.388 9 C -0.302 4.302 10 S 0.173 5.827 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.503 5.503 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 N -0.356 5.356 20 C 0.368 3.632 21 O -0.392 6.392 22 C 0.006 3.994 23 N -0.191 5.191 24 C -0.010 4.010 25 C -0.230 4.230 26 C -0.028 4.028 27 N -0.190 5.190 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.268 0.732 40 H 0.197 0.803 41 H 0.172 0.828 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.503 9.577 0.972 16.583 hybrid contribution 2.680 0.255 0.286 2.708 sum -10.822 9.832 1.257 14.675 Atomic orbital electron populations 1.22136 0.94463 1.02683 1.02795 1.21498 0.94427 0.97821 0.84369 0.89243 1.21808 0.80607 1.02623 0.96621 1.47853 1.05932 1.22068 1.60058 1.21806 0.95843 0.90494 0.98249 1.20346 0.90362 0.80349 0.76374 1.90621 1.64310 1.38746 1.45100 1.23559 0.93585 1.07599 1.05440 1.85314 1.05359 1.18038 1.73955 1.22924 0.91312 1.09712 1.44402 0.91041 1.24950 0.99424 0.94482 0.94543 1.70014 1.35732 1.08632 1.35921 0.86162 0.83333 0.78282 0.78016 1.19638 1.20597 1.20520 1.46173 1.65224 1.16229 1.07979 1.17285 0.78251 0.85706 0.81957 1.90754 1.49361 1.14743 1.84354 1.22837 0.95641 0.87658 0.93219 1.68432 1.09909 1.08553 1.32190 1.23452 0.89323 1.01177 0.87015 1.23223 1.01520 0.97121 1.01180 1.23311 0.90825 0.92206 0.96464 1.68187 1.12251 1.39516 0.98999 0.91933 0.91712 0.91295 0.88961 0.88902 0.92777 0.90561 0.91135 0.89289 0.89567 0.92295 0.73222 0.80272 0.82830 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.27 16 2 C 0.12 1.52 2.88 -67.93 -0.20 1.32 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C 0.11 1.18 5.19 -4.05 -0.02 1.16 16 5 N -0.62 -8.40 2.77 -181.58 -0.50 -8.90 16 6 C 0.08 0.83 10.29 59.85 0.62 1.44 16 7 C 0.54 9.67 6.99 -10.99 -0.08 9.59 16 8 O -0.51 -10.53 13.18 5.55 0.07 -10.46 16 9 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 10 S -0.05 -1.39 20.57 -107.50 -2.21 -3.61 16 11 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.08 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.35 13.22 55.49 0.73 -24.62 16 15 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 N -0.70 -10.87 4.47 -54.53 -0.24 -11.11 16 20 C 0.59 10.25 7.82 -12.01 -0.09 10.16 16 21 O -0.52 -9.89 16.53 5.39 0.09 -9.80 16 22 C 0.28 4.77 7.60 -157.08 -1.19 3.57 16 23 N -0.47 -7.97 9.58 -11.12 -0.11 -8.08 16 24 C 0.16 2.12 11.30 -17.22 -0.19 1.93 16 25 C -0.21 -2.21 10.18 -39.16 -0.40 -2.61 16 26 C 0.14 1.62 11.30 -17.22 -0.19 1.42 16 27 N -0.47 -7.58 10.13 -11.12 -0.11 -7.70 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 32 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 35 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 36 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 37 H 0.09 1.68 8.11 -51.91 -0.42 1.26 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.43 7.30 5.13 -40.82 -0.21 7.09 16 40 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -36.49 374.76 -8.14 -44.64 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.45 Total: 6.74 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -1.03 Total: 11.21 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.23 Total: -60.41 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.26 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.49 -8.14 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510461151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.204 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds