Wall clock time and date at job start Tue Mar 31 2020 20:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.46502 * 120.00163 * 269.99690 * 5 4 2 7 7 C 1.34774 * 120.00242 * 90.00555 * 5 4 2 8 8 O 1.21286 * 119.99601 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00803 * 179.97438 * 7 5 4 10 10 S 1.80998 * 109.47579 * 179.97438 * 9 7 5 11 11 C 1.76204 * 99.99925 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00063 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99619 * 180.02562 * 11 10 9 14 14 N 1.31624 * 120.00456 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99619 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47337 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47230 * 120.00138 * 15 13 11 18 18 H 1.48498 * 109.47184 * 240.00007 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21474 * 120.00171 * 0.02562 * 20 19 2 22 22 C 1.48538 * 120.00066 * 180.02562 * 20 19 2 23 23 N 1.32460 * 119.18323 * 359.72218 * 22 20 19 24 24 C 1.32119 * 120.76651 * 179.76425 * 23 22 20 25 25 C 1.38794 * 119.16434 * 0.50426 * 24 23 22 26 26 C 1.38808 * 118.50649 * 359.75312 * 25 24 23 27 27 N 1.32107 * 119.16162 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 33 33 H 1.09006 * 109.46878 * 90.00324 * 6 5 4 34 34 H 1.09000 * 109.47249 * 209.99908 * 6 5 4 35 35 H 1.08998 * 109.47277 * 330.00800 * 6 5 4 36 36 H 1.09005 * 109.46648 * 300.00169 * 9 7 5 37 37 H 1.09005 * 109.46985 * 59.98988 * 9 7 5 38 38 H 0.96996 * 120.00528 * 180.02562 * 14 13 11 39 39 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 40 40 H 1.07999 * 120.41651 * 180.26426 * 24 23 22 41 41 H 1.08003 * 120.74857 * 179.77315 * 25 24 23 42 42 H 1.08002 * 120.41699 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2343 -1.7613 7 6 4.0759 -1.8985 -0.6117 8 8 3.3852 -2.7763 -0.1390 9 6 5.5777 -2.0069 -0.5518 10 16 6.0389 -3.5469 0.2801 11 6 7.7948 -3.4179 0.2111 12 1 8.2553 -2.5585 -0.2533 13 6 8.5861 -4.4214 0.7528 14 7 8.0249 -5.4691 1.3184 15 14 10.4476 -4.2850 0.6791 16 1 10.8248 -3.0208 -0.0026 17 1 10.9991 -4.2868 2.0580 18 1 10.9990 -5.4387 -0.0760 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8577 1.1601 2.4118 22 6 2.6426 -0.7185 3.5698 23 7 2.9482 -2.0051 3.4932 24 6 3.3961 -2.6574 4.5512 25 6 3.5346 -1.9802 5.7548 26 6 3.2001 -0.6338 5.7996 27 7 2.7634 -0.0421 4.7022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2953 32 1 1.7517 -0.1582 -2.1370 33 1 4.5400 0.9850 -0.9982 34 1 5.2735 -0.1922 -2.1137 35 1 3.8103 0.6991 -2.5963 36 1 5.9828 -2.0048 -1.5638 37 1 5.9813 -1.1597 0.0028 38 1 8.5778 -6.1702 1.6972 39 1 2.2491 -1.6318 1.1525 40 1 3.6476 -3.7054 4.4813 41 1 3.8950 -2.4893 6.6365 42 1 3.2964 -0.0768 6.7199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510461151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:24 Heat of formation + Delta-G solvation = -37.805602 kcal Electronic energy + Delta-G solvation = -27281.103347 eV Core-core repulsion = 23387.192626 eV Total energy + Delta-G solvation = -3893.910721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27773 -41.21237 -40.14908 -37.38995 -35.88472 -34.86051 -34.57968 -33.52680 -32.11981 -30.85911 -28.25956 -27.68172 -26.71545 -26.35847 -25.54136 -23.14459 -21.69003 -20.73370 -19.75381 -19.37919 -18.67751 -18.02331 -17.41706 -17.18240 -17.01113 -16.87748 -16.58046 -16.53465 -15.96436 -15.77326 -15.24219 -14.91659 -14.72195 -14.53738 -14.51645 -14.49726 -13.88547 -13.62217 -13.52814 -13.31892 -13.14706 -12.98964 -12.91390 -12.72840 -12.58945 -12.33268 -12.14621 -12.04009 -11.70250 -11.24817 -11.15402 -10.88279 -10.78387 -10.38465 -10.24931 -10.23845 -9.68468 -8.61855 -8.34546 -6.09995 -0.62173 0.05904 1.26204 1.38956 1.44566 1.49514 1.53839 1.58060 1.75098 2.14022 2.27148 2.78384 2.90763 2.99274 3.25617 3.28816 3.62985 3.71124 3.74836 3.91449 4.06983 4.09882 4.17587 4.21126 4.31852 4.36255 4.45317 4.50107 4.64098 4.70158 4.75240 4.79139 4.91188 4.95617 5.21923 5.26873 5.36324 5.41970 5.57075 5.88306 6.19521 6.23059 6.27809 6.81878 7.02079 7.07426 7.15426 8.74353 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.004307 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.513354 B = 6500.181108 C = 8585.021419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 H 0.087 0.913 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.071 3.929 7 C 0.534 3.466 8 O -0.546 6.546 9 C -0.130 4.130 10 S -0.124 6.124 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.021 3.979 14 N -0.905 5.905 15 Si 0.990 3.010 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.272 1.272 19 N -0.696 5.696 20 C 0.579 3.421 21 O -0.547 6.547 22 C 0.247 3.753 23 N -0.504 5.504 24 C 0.129 3.871 25 C -0.179 4.179 26 C 0.134 3.866 27 N -0.501 5.501 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.271 0.729 39 H 0.418 0.582 40 H 0.190 0.810 41 H 0.201 0.799 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 11.023 0.627 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.105 0.895 4 C -0.014 4.014 5 N -0.346 5.346 6 C -0.071 4.071 7 C 0.322 3.678 8 O -0.424 6.424 9 C -0.281 4.281 10 S 0.103 5.897 11 C -0.699 4.699 12 H 0.093 0.907 13 C -0.185 4.185 14 N -0.542 5.542 15 Si 0.813 3.187 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.197 1.197 19 N -0.352 5.352 20 C 0.362 3.638 21 O -0.423 6.423 22 C -0.023 4.023 23 N -0.221 5.221 24 C -0.036 4.036 25 C -0.200 4.200 26 C -0.032 4.032 27 N -0.217 5.217 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.259 0.741 40 H 0.207 0.793 41 H 0.218 0.782 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.895 10.903 0.539 16.895 hybrid contribution 2.431 -0.112 0.445 2.474 sum -10.464 10.791 0.984 15.063 Atomic orbital electron populations 1.22076 0.92674 1.02921 1.03542 1.21785 0.95876 0.97417 0.83571 0.89510 1.22067 0.78659 1.02845 0.97838 1.47843 1.07402 1.21066 1.58283 1.22085 0.96025 0.89517 0.99448 1.20019 0.89284 0.81516 0.76996 1.90614 1.64493 1.40444 1.46809 1.23388 0.95713 1.03711 1.05250 1.85388 1.05703 1.22913 1.75687 1.23230 0.91914 1.10088 1.44667 0.90734 1.25969 1.04748 0.93902 0.93831 1.70151 1.37788 1.09501 1.36750 0.85029 0.76647 0.78714 0.78351 1.18588 1.19841 1.19749 1.46349 1.64484 1.15828 1.08570 1.17536 0.78044 0.85569 0.82683 1.90706 1.51039 1.15647 1.84936 1.22775 0.97672 0.88096 0.93784 1.68356 1.10969 1.08755 1.34009 1.23881 0.89948 1.01998 0.87809 1.23669 0.98484 0.96577 1.01293 1.24134 0.89391 0.93068 0.96619 1.68192 1.13228 1.40467 0.99795 0.91937 0.93641 0.87789 0.89925 0.84004 0.92857 0.90744 0.86989 0.87696 0.89298 0.91962 0.74108 0.79273 0.78203 0.76646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.48 71.98 0.68 -2.23 16 2 C 0.12 2.79 2.88 44.99 0.13 2.92 16 3 H 0.09 2.12 7.58 -2.39 -0.02 2.10 16 4 C 0.11 2.17 5.19 86.38 0.45 2.62 16 5 N -0.61 -15.58 2.77 -846.77 -2.35 -17.93 16 6 C 0.07 1.30 10.29 127.77 1.31 2.61 16 7 C 0.53 19.32 6.99 87.66 0.61 19.93 16 8 O -0.55 -23.13 13.18 -3.05 -0.04 -23.17 16 9 C -0.13 -5.23 4.71 71.23 0.34 -4.89 16 10 S -0.12 -6.70 20.57 -56.49 -1.16 -7.86 16 11 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 12 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 13 C 0.02 1.17 5.49 84.86 0.47 1.63 16 14 N -0.91 -53.83 13.22 21.65 0.29 -53.54 16 15 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 N -0.70 -22.40 4.47 -444.75 -1.99 -24.38 16 20 C 0.58 21.20 7.82 86.99 0.68 21.88 16 21 O -0.55 -21.69 16.53 -3.63 -0.06 -21.75 16 22 C 0.25 8.87 7.60 137.69 1.05 9.92 16 23 N -0.50 -17.76 9.58 -189.09 -1.81 -19.58 16 24 C 0.13 3.54 11.30 84.78 0.96 4.50 16 25 C -0.18 -3.47 10.18 22.54 0.23 -3.24 16 26 C 0.13 2.91 11.30 84.79 0.96 3.87 16 27 N -0.50 -16.21 10.13 -189.09 -1.92 -18.12 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.89 7.42 -2.39 -0.02 1.87 16 32 H 0.14 1.50 7.89 -2.39 -0.02 1.48 16 33 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.40 6.44 -2.39 -0.02 1.39 16 35 H 0.11 1.16 7.89 -2.39 -0.02 1.14 16 36 H 0.10 3.85 7.40 -2.39 -0.02 3.83 16 37 H 0.09 3.50 8.11 -2.39 -0.02 3.48 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.42 15.04 5.13 -92.71 -0.48 14.56 16 40 H 0.19 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -84.62 374.76 2.07 -82.55 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.58 Total: 29.77 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 8.51 Total: 28.98 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -7.78 Total: -133.56 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -0.10 Total: -44.92 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.16 Total: -7.86 kcal Total: -84.62 2.07 -82.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510461151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.744 kcal (2) G-P(sol) polarization free energy of solvation -84.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds