Wall clock time and date at job start Tue Mar 31 2020 20:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46490 * 109.47559 * 295.00069 * 4 2 1 6 6 C 1.36935 * 120.00279 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99907 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99944 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46819 * 90.00679 * 10 8 6 12 12 H 1.48505 * 109.47207 * 209.99761 * 10 8 6 13 13 H 1.48500 * 109.47566 * 330.00450 * 10 8 6 14 14 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 15 15 N 1.46498 * 109.47059 * 64.99625 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.08999 * 110.66419 * 301.79147 * 18 16 15 20 20 C 1.54704 * 110.74735 * 65.00165 * 18 16 15 21 21 C 1.51646 * 101.92996 * 143.61360 * 20 18 16 22 22 C 1.37740 * 132.15453 * 164.58353 * 21 20 18 23 23 C 1.38451 * 119.96332 * 180.36355 * 22 21 20 24 24 Cl 1.73609 * 120.12761 * 180.02562 * 23 22 21 25 25 C 1.38385 * 119.74326 * 0.02562 * 23 22 21 26 26 C 1.37929 * 120.33275 * 359.82731 * 25 23 22 27 27 C 1.38873 * 107.04225 * 344.61376 * 21 20 18 28 28 O 1.36157 * 111.23017 * 358.93091 * 27 21 20 29 29 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 31 31 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 34 34 H 0.97002 * 120.00315 * 0.02562 * 5 4 2 35 35 H 0.96995 * 119.99957 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47066 * 304.99893 * 14 2 1 37 37 H 1.08994 * 109.46974 * 185.00040 * 14 2 1 38 38 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 39 39 H 1.09001 * 110.93903 * 261.77453 * 20 18 16 40 40 H 1.09000 * 110.94122 * 25.42013 * 20 18 16 41 41 H 1.08002 * 120.02242 * 0.35179 * 22 21 20 42 42 H 1.07993 * 119.83314 * 179.80711 * 25 23 22 43 43 H 1.07998 * 119.86984 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5622 -1.3378 3.7866 8 6 1.6335 0.2962 4.8161 9 7 0.9493 1.4138 4.6931 10 14 2.1085 -0.3263 6.5121 11 1 3.4309 0.2324 6.8919 12 1 1.0872 0.1031 7.5010 13 1 2.1850 -1.8092 6.4916 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 2.0008 -0.4106 -3.6656 17 8 2.6308 -1.4407 -3.7789 18 6 1.6075 0.3708 -4.8927 19 1 0.5250 0.4886 -4.9431 20 6 2.3102 1.7489 -4.9134 21 6 2.5899 1.9360 -6.3921 22 6 2.9385 3.0428 -7.1342 23 6 3.1297 2.9270 -8.5005 24 17 3.5698 4.3191 -9.4399 25 6 2.9686 1.6973 -9.1145 26 6 2.6225 0.5879 -8.3717 27 6 2.4326 0.6955 -6.9962 28 8 2.1109 -0.2609 -6.0820 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.1483 0.8592 2.3518 35 1 0.6927 1.9148 5.4831 36 1 1.6054 -1.7199 -1.2950 37 1 3.1263 -0.7995 -1.2055 38 1 1.1488 0.8593 -2.3518 39 1 1.6474 2.5298 -4.5405 40 1 3.2376 1.7219 -4.3414 41 1 3.0624 4.0005 -6.6505 42 1 3.1144 1.6060 -10.1807 43 1 2.4992 -0.3683 -8.8585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568183569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:29 Heat of formation + Delta-G solvation = -41.685080 kcal Electronic energy + Delta-G solvation = -25495.223172 eV Core-core repulsion = 21566.807767 eV Total energy + Delta-G solvation = -3928.415405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88797 -39.70167 -38.15032 -36.90404 -36.53850 -34.54444 -33.43830 -32.50506 -30.52212 -30.36992 -29.75958 -26.72976 -25.66357 -24.49996 -22.92665 -22.45473 -22.25287 -20.83955 -19.98738 -18.18047 -17.85513 -17.45250 -17.00207 -16.87250 -16.03994 -15.63827 -15.06244 -14.81563 -14.58818 -14.42706 -14.13354 -13.83522 -13.78453 -13.71869 -13.55010 -13.12136 -12.89902 -12.76001 -12.71626 -12.42484 -12.19392 -12.10411 -11.80123 -11.29125 -11.12573 -11.09007 -10.96032 -10.77304 -10.63059 -10.49634 -10.14401 -9.96975 -9.71078 -9.53120 -9.23129 -8.91241 -8.57518 -6.96324 -5.80673 -3.09174 0.60264 0.69604 1.66031 2.21087 2.31687 2.96342 3.23260 3.41718 3.47239 3.48626 3.77684 3.94836 4.24251 4.34324 4.49888 4.55646 4.55884 4.65481 4.93188 4.95945 5.09716 5.12930 5.16253 5.29629 5.33101 5.46026 5.54098 5.66903 5.72079 5.76620 5.85254 5.88183 5.89114 6.02034 6.14934 6.28487 6.35216 6.54364 6.59180 6.70979 6.80228 7.22958 7.67456 7.92433 8.38472 9.49910 10.06547 10.41215 11.42275 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.001676 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.028192 B =16698.824432 C =17442.532812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.717 5.717 16 C 0.515 3.485 17 O -0.516 6.516 18 C 0.064 3.936 19 H 0.118 0.882 20 C -0.099 4.099 21 C -0.162 4.162 22 C -0.056 4.056 23 C -0.066 4.066 24 Cl -0.066 7.066 25 C -0.072 4.072 26 C -0.124 4.124 27 C 0.115 3.885 28 O -0.269 6.269 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 4.662 -29.887 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.004 3.996 15 N -0.370 5.370 16 C 0.299 3.701 17 O -0.390 6.390 18 C 0.004 3.996 19 H 0.135 0.865 20 C -0.136 4.136 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.093 4.093 24 Cl -0.037 7.037 25 C -0.091 4.091 26 C -0.143 4.143 27 C 0.069 3.931 28 O -0.181 6.181 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.237 0.763 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.960 3.652 -29.905 30.143 hybrid contribution -0.159 0.646 1.029 1.225 sum 0.801 4.298 -28.877 29.206 Atomic orbital electron populations 1.21804 0.94580 1.02055 1.01540 1.21563 0.96776 1.00537 0.94065 0.90411 1.20574 0.96663 0.94243 0.85327 1.42323 1.66940 1.27685 1.00565 1.19240 1.28725 1.05497 0.83638 0.91130 1.24735 1.00955 0.97413 0.97883 1.69649 1.43478 1.16634 1.28537 0.86176 0.77587 0.78045 0.84305 1.21718 1.21766 1.20738 1.21495 1.00399 0.95333 0.82391 1.45920 1.57571 1.28120 1.05410 1.19892 0.80409 0.85856 0.83977 1.90778 1.38484 1.23584 1.86187 1.23248 1.00297 0.91386 0.84675 0.86488 1.21787 1.02774 0.95855 0.93216 1.20582 1.06409 0.93996 0.95360 1.20121 0.97586 0.98438 0.91363 1.20637 1.07452 0.89133 0.92044 1.98378 1.91470 1.41361 1.72503 1.20781 0.97797 0.89943 1.00564 1.20199 1.04727 0.99967 0.89391 1.19690 0.95056 0.87472 0.90853 1.86988 1.78548 1.29704 1.22881 0.91045 0.93919 0.92722 0.95938 0.96084 0.78208 0.93514 0.90991 0.91040 0.76293 0.87430 0.87972 0.84382 0.83900 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 2 C -0.11 -1.56 2.46 -90.62 -0.22 -1.78 16 3 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 4 C 0.16 3.04 5.65 -4.05 -0.02 3.02 16 5 N -0.73 -17.76 5.33 -59.91 -0.32 -18.08 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 10 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.13 1.59 5.06 -4.04 -0.02 1.57 16 15 N -0.72 -7.14 5.27 -60.30 -0.32 -7.46 16 16 C 0.52 6.02 7.13 -10.98 -0.08 5.94 16 17 O -0.52 -8.50 16.57 -13.51 -0.22 -8.72 16 18 C 0.06 0.56 4.05 -26.98 -0.11 0.45 16 19 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.10 -0.68 6.63 -26.52 -0.18 -0.86 16 21 C -0.16 -1.34 6.27 -104.10 -0.65 -1.99 16 22 C -0.06 -0.42 9.82 -39.68 -0.39 -0.81 16 23 C -0.07 -0.49 6.33 -39.45 -0.25 -0.74 16 24 Cl -0.07 -0.47 28.97 -51.86 -1.50 -1.97 16 25 C -0.07 -0.49 9.81 -39.64 -0.39 -0.88 16 26 C -0.12 -0.97 10.06 -39.31 -0.40 -1.37 16 27 C 0.12 1.11 7.04 -38.96 -0.27 0.84 16 28 O -0.27 -3.10 10.39 -39.30 -0.41 -3.51 16 29 H 0.07 1.16 7.18 -51.93 -0.37 0.78 16 30 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.40 2.88 7.66 -40.82 -0.31 2.57 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -33.74 377.43 -10.22 -43.96 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.95 Total: 5.33 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.89 Total: -5.45 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.09 Total: -52.47 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.63 Total: -12.23 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.74 -10.22 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568183569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.276 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds