Wall clock time and date at job start Tue Mar 31 2020 20:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46490 * 109.47559 * 295.00069 * 4 2 1 6 6 C 1.36935 * 120.00279 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99907 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99944 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46819 * 90.00679 * 10 8 6 12 12 H 1.48505 * 109.47207 * 209.99761 * 10 8 6 13 13 H 1.48500 * 109.47566 * 330.00450 * 10 8 6 14 14 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 15 15 N 1.46498 * 109.47059 * 64.99625 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.08999 * 110.66419 * 301.79147 * 18 16 15 20 20 C 1.54704 * 110.74735 * 65.00165 * 18 16 15 21 21 C 1.51646 * 101.92996 * 143.61360 * 20 18 16 22 22 C 1.37740 * 132.15453 * 164.58353 * 21 20 18 23 23 C 1.38451 * 119.96332 * 180.36355 * 22 21 20 24 24 Cl 1.73609 * 120.12761 * 180.02562 * 23 22 21 25 25 C 1.38385 * 119.74326 * 0.02562 * 23 22 21 26 26 C 1.37929 * 120.33275 * 359.82731 * 25 23 22 27 27 C 1.38873 * 107.04225 * 344.61376 * 21 20 18 28 28 O 1.36157 * 111.23017 * 358.93091 * 27 21 20 29 29 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 31 31 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 34 34 H 0.97002 * 120.00315 * 0.02562 * 5 4 2 35 35 H 0.96995 * 119.99957 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47066 * 304.99893 * 14 2 1 37 37 H 1.08994 * 109.46974 * 185.00040 * 14 2 1 38 38 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 39 39 H 1.09001 * 110.93903 * 261.77453 * 20 18 16 40 40 H 1.09000 * 110.94122 * 25.42013 * 20 18 16 41 41 H 1.08002 * 120.02242 * 0.35179 * 22 21 20 42 42 H 1.07993 * 119.83314 * 179.80711 * 25 23 22 43 43 H 1.07998 * 119.86984 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5622 -1.3378 3.7866 8 6 1.6335 0.2962 4.8161 9 7 0.9493 1.4138 4.6931 10 14 2.1085 -0.3263 6.5121 11 1 3.4309 0.2324 6.8919 12 1 1.0872 0.1031 7.5010 13 1 2.1850 -1.8092 6.4916 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 2.0008 -0.4106 -3.6656 17 8 2.6308 -1.4407 -3.7789 18 6 1.6075 0.3708 -4.8927 19 1 0.5250 0.4886 -4.9431 20 6 2.3102 1.7489 -4.9134 21 6 2.5899 1.9360 -6.3921 22 6 2.9385 3.0428 -7.1342 23 6 3.1297 2.9270 -8.5005 24 17 3.5698 4.3191 -9.4399 25 6 2.9686 1.6973 -9.1145 26 6 2.6225 0.5879 -8.3717 27 6 2.4326 0.6955 -6.9962 28 8 2.1109 -0.2609 -6.0820 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.1483 0.8592 2.3518 35 1 0.6927 1.9148 5.4831 36 1 1.6054 -1.7199 -1.2950 37 1 3.1263 -0.7995 -1.2055 38 1 1.1488 0.8593 -2.3518 39 1 1.6474 2.5298 -4.5405 40 1 3.2376 1.7219 -4.3414 41 1 3.0624 4.0005 -6.6505 42 1 3.1144 1.6060 -10.1807 43 1 2.4992 -0.3683 -8.8585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568183569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:28 Heat of formation + Delta-G solvation = -62.747472 kcal Electronic energy + Delta-G solvation = -25496.136506 eV Core-core repulsion = 21566.807767 eV Total energy + Delta-G solvation = -3929.328739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55102 -40.61311 -38.81529 -38.15795 -37.14002 -36.02169 -34.43489 -33.70616 -32.01147 -30.96335 -30.71574 -27.79739 -27.17251 -25.50893 -24.17271 -23.43608 -22.85114 -21.78581 -21.22938 -19.31061 -18.80092 -18.41759 -18.05533 -17.54280 -17.11610 -16.61559 -16.46401 -15.84571 -15.67633 -15.43223 -15.22191 -14.98677 -14.78289 -14.46763 -14.38134 -14.26797 -14.06671 -13.64030 -13.56963 -13.46136 -13.31942 -12.95089 -12.86147 -12.79924 -12.35834 -12.18212 -12.16299 -11.99539 -11.87699 -11.69593 -11.67171 -11.65002 -10.97362 -10.93549 -10.21100 -10.06879 -9.18335 -8.98370 -7.95309 -5.23028 0.02139 0.14256 1.09844 1.37504 1.48157 1.49192 1.52024 1.57857 2.33695 2.53324 2.58367 3.16829 3.32909 3.38624 3.64080 3.72276 3.76083 3.91819 3.97941 4.02751 4.08500 4.16392 4.35641 4.40778 4.55427 4.62218 4.65551 4.70742 4.76985 4.78914 4.92585 4.95688 5.06602 5.13169 5.13932 5.20525 5.25974 5.33370 5.39820 5.49824 5.51303 5.92758 6.27761 6.41156 7.07172 7.34919 8.10328 8.34535 9.27970 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.001676 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.028192 B =16698.824432 C =17442.532812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.084 0.916 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.138 3.862 15 N -0.700 5.700 16 C 0.517 3.483 17 O -0.571 6.571 18 C 0.066 3.934 19 H 0.150 0.850 20 C -0.093 4.093 21 C -0.165 4.165 22 C -0.060 4.060 23 C -0.072 4.072 24 Cl -0.063 7.063 25 C -0.071 4.071 26 C -0.130 4.130 27 C 0.088 3.912 28 O -0.301 6.301 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.420 0.580 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.164 0.836 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 5.548 -31.030 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.102 0.898 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.197 1.197 14 C 0.014 3.986 15 N -0.354 5.354 16 C 0.302 3.698 17 O -0.449 6.449 18 C 0.007 3.993 19 H 0.167 0.833 20 C -0.130 4.130 21 C -0.167 4.167 22 C -0.078 4.078 23 C -0.099 4.099 24 Cl -0.034 7.034 25 C -0.089 4.089 26 C -0.149 4.149 27 C 0.043 3.957 28 O -0.214 6.214 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.161 0.839 40 H 0.114 0.886 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.659 4.552 -31.073 31.411 hybrid contribution -0.033 0.351 1.287 1.335 sum 0.626 4.903 -29.786 30.193 Atomic orbital electron populations 1.21753 0.93751 1.01978 1.02001 1.21329 0.97238 1.00225 0.92396 0.89794 1.20738 0.96551 0.94166 0.85776 1.42482 1.66784 1.27847 1.01260 1.19622 1.27840 1.05319 0.85140 0.90953 1.25509 1.01691 0.97939 1.01386 1.69788 1.44968 1.17832 1.29096 0.85178 0.76959 0.77920 0.79923 1.21469 1.22075 1.19703 1.21185 0.99738 0.95109 0.82581 1.45688 1.57093 1.28316 1.04288 1.20440 0.79171 0.85220 0.84959 1.90755 1.41046 1.26134 1.86976 1.23394 1.02059 0.91357 0.82534 0.83301 1.21845 1.03089 0.95560 0.92480 1.20728 1.06290 0.93643 0.96003 1.20319 0.97176 0.98925 0.91414 1.20809 1.07282 0.89435 0.92334 1.98380 1.91433 1.41208 1.72426 1.21017 0.96961 0.89400 1.01542 1.20438 1.04463 1.00827 0.89133 1.19982 0.96530 0.87798 0.91384 1.86938 1.79251 1.31261 1.23932 0.93885 0.90080 0.93095 0.96206 0.96288 0.78980 0.93960 0.91636 0.91947 0.74205 0.83881 0.88648 0.82776 0.81881 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.94 71.98 0.64 -2.85 16 2 C -0.09 -2.50 2.46 -10.79 -0.03 -2.53 16 3 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 4 C 0.15 5.85 5.65 86.38 0.49 6.33 16 5 N -0.74 -36.15 5.33 -343.46 -1.83 -37.98 16 6 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 7 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 9 N -0.97 -57.68 13.06 21.65 0.28 -57.39 16 10 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 C 0.14 3.29 5.06 86.38 0.44 3.73 16 15 N -0.70 -12.49 5.27 -463.07 -2.44 -14.94 16 16 C 0.52 11.46 7.13 87.66 0.63 12.09 16 17 O -0.57 -18.95 16.57 15.19 0.25 -18.70 16 18 C 0.07 1.04 4.05 30.43 0.12 1.16 16 19 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.09 -1.05 6.63 30.73 0.20 -0.85 16 21 C -0.17 -2.44 6.27 -19.53 -0.12 -2.56 16 22 C -0.06 -0.77 9.82 22.20 0.22 -0.55 16 23 C -0.07 -0.95 6.33 22.36 0.14 -0.81 16 24 Cl -0.06 -0.79 28.97 -2.72 -0.08 -0.87 16 25 C -0.07 -0.86 9.81 22.23 0.22 -0.64 16 26 C -0.13 -1.92 10.06 22.45 0.23 -1.69 16 27 C 0.09 1.62 7.04 22.67 0.16 1.78 16 28 O -0.30 -6.78 10.39 -77.12 -0.80 -7.58 16 29 H 0.04 1.36 7.18 -2.39 -0.02 1.34 16 30 H 0.08 1.42 7.18 -2.39 -0.02 1.40 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.38 19.21 6.85 -92.71 -0.63 18.57 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 4.58 7.66 -92.71 -0.71 3.87 16 39 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.10 1.24 7.92 -2.39 -0.02 1.22 16 41 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -74.15 377.43 1.75 -72.40 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.30 Total: 21.23 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.64 Total: -3.84 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.99 Total: -110.31 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.55 Total: -26.28 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -74.15 1.75 -72.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568183569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.652 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds