Wall clock time and date at job start Tue Mar 31 2020 20:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54327 * 110.00988 * 238.90078 * 2 1 3 5 5 H 1.08998 * 110.71822 * 144.33679 * 4 2 1 6 6 N 1.46904 * 110.71876 * 21.06842 * 4 2 1 7 7 C 1.46901 * 110.99874 * 155.00142 * 6 4 2 8 8 C 1.50698 * 109.46805 * 179.97438 * 7 6 4 9 9 O 1.21297 * 120.00415 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99656 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99440 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00790 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99507 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99811 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00164 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47117 * 90.00186 * 15 13 11 17 17 H 1.48496 * 109.47071 * 210.00215 * 15 13 11 18 18 H 1.48505 * 109.46954 * 330.00078 * 15 13 11 19 19 C 1.55153 * 102.94137 * 262.70300 * 4 2 1 20 20 C 1.54912 * 101.58435 * 324.49859 * 19 4 2 21 21 N 1.47022 * 109.88494 * 121.01779 * 2 1 3 22 22 C 1.34779 * 125.64557 * 300.59197 * 21 2 1 23 23 O 1.21634 * 120.00067 * 0.02562 * 22 21 2 24 24 C 1.47268 * 120.00017 * 179.97438 * 22 21 2 25 25 C 1.35203 * 123.14191 * 179.73448 * 24 22 21 26 26 S 1.70945 * 108.82673 * 179.87920 * 25 24 22 27 27 C 1.70771 * 91.12734 * 0.32591 * 26 25 24 28 28 N 1.28646 * 110.56039 * 359.80764 * 27 26 25 29 29 H 1.09000 * 109.46713 * 300.70085 * 1 2 3 30 30 H 1.08998 * 109.47126 * 60.69984 * 1 2 3 31 31 H 1.09002 * 109.46967 * 180.70601 * 1 2 3 32 32 H 1.00899 * 110.99405 * 278.95287 * 6 4 2 33 33 H 1.08999 * 109.46857 * 299.99594 * 7 6 4 34 34 H 1.09001 * 109.46852 * 59.99840 * 7 6 4 35 35 H 0.96994 * 119.99866 * 0.02562 * 10 8 7 36 36 H 0.96998 * 120.00043 * 179.97438 * 14 13 11 37 37 H 1.09000 * 111.00479 * 206.42312 * 19 4 2 38 38 H 1.08996 * 111.04071 * 82.58795 * 19 4 2 39 39 H 1.08998 * 110.36254 * 278.17337 * 20 19 4 40 40 H 1.08993 * 110.36787 * 155.85144 * 20 19 4 41 41 H 1.08001 * 125.58700 * 0.02562 * 25 24 22 42 42 H 1.07996 * 124.71692 * 179.84574 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 2.9684 -0.2808 -1.6163 6 7 1.0312 -0.8049 -2.2907 7 6 1.6423 -0.9521 -3.6184 8 6 0.5605 -1.0064 -4.6660 9 8 -0.6051 -0.9304 -4.3389 10 7 0.8881 -1.1393 -5.9667 11 6 -0.0962 -1.1892 -6.9197 12 1 -1.1340 -1.1223 -6.6284 13 6 0.2415 -1.3267 -8.2606 14 7 -0.7019 -1.3740 -9.1742 15 14 2.0364 -1.4430 -8.7646 16 1 2.4581 -2.8669 -8.7688 17 1 2.2066 -0.8724 -10.1249 18 1 2.8715 -0.6823 -7.8006 19 6 2.3575 -2.1680 -0.6903 20 6 2.8599 -1.8466 0.7394 21 7 2.0301 -0.7124 1.1849 22 6 1.7731 -0.3827 2.4662 23 8 1.0718 0.5787 2.7179 24 6 2.3404 -1.1872 3.5615 25 6 2.1284 -0.9111 4.8680 26 16 2.9492 -2.0717 5.8174 27 6 3.5357 -2.8525 4.4164 28 7 3.1172 -2.2543 3.3571 29 1 -0.3633 0.5247 0.8836 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0276 0.0127 32 1 0.3718 -1.5474 -2.1118 33 1 2.2956 -0.1018 -3.8139 34 1 2.2249 -1.8728 -3.6501 35 1 1.8201 -1.2004 -6.2282 36 1 -0.4662 -1.4697 -10.1102 37 1 3.1344 -2.6590 -1.2762 38 1 1.4525 -2.7747 -0.6591 39 1 3.9116 -1.5612 0.7166 40 1 2.7129 -2.7048 1.3951 41 1 1.5354 -0.0929 5.2492 42 1 4.1692 -3.7271 4.4193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571453015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:30 Heat of formation + Delta-G solvation = -25.728115 kcal Electronic energy + Delta-G solvation = -26418.936177 eV Core-core repulsion = 22525.549175 eV Total energy + Delta-G solvation = -3893.387002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82490 -40.51571 -40.00712 -38.78708 -36.21571 -35.57888 -33.73175 -32.40387 -31.84535 -31.39155 -28.41555 -27.02741 -26.37736 -25.19355 -24.41990 -22.76749 -21.30925 -21.04535 -20.32049 -20.27180 -19.37065 -17.85808 -17.52512 -17.35056 -16.95417 -16.79631 -16.40136 -16.25773 -15.85920 -15.54296 -15.01401 -14.96528 -14.77423 -14.46623 -14.38492 -14.31338 -14.03790 -13.86234 -13.65582 -13.44592 -13.10946 -13.00992 -12.92524 -12.73065 -12.47634 -12.39286 -11.97773 -11.85026 -11.73782 -11.48990 -11.19166 -10.73090 -10.66085 -10.41475 -10.23064 -10.04776 -9.65784 -9.27000 -8.39578 -6.00538 -0.47007 0.32797 0.65175 0.94121 1.31999 1.37494 1.46639 1.89537 1.98897 2.24999 2.25486 2.74275 3.06157 3.17154 3.31941 3.58325 3.69867 3.91926 4.05880 4.14161 4.15609 4.23346 4.35435 4.36165 4.42477 4.51361 4.60314 4.67114 4.71194 4.77352 4.98954 5.00859 5.12623 5.12921 5.37137 5.43159 5.54638 5.92380 6.06098 6.33091 6.34594 6.47420 6.61719 6.90402 7.01371 7.42188 7.99564 8.78182 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.001997 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.477748 B =14019.249625 C =14536.993940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.142 3.858 3 H 0.070 0.930 4 C 0.090 3.910 5 H 0.117 0.883 6 N -0.673 5.673 7 C 0.064 3.936 8 C 0.448 3.552 9 O -0.616 6.616 10 N -0.591 5.591 11 C -0.328 4.328 12 H 0.053 0.947 13 C -0.018 4.018 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.256 1.256 17 H -0.278 1.278 18 H -0.229 1.229 19 C -0.159 4.159 20 C 0.111 3.889 21 N -0.598 5.598 22 C 0.595 3.405 23 O -0.576 6.576 24 C -0.017 4.017 25 C -0.242 4.242 26 S 0.293 5.707 27 C -0.004 4.004 28 N -0.461 5.461 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.348 0.652 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.391 0.609 36 H 0.278 0.722 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.185 0.815 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.913 -6.055 30.949 37.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.021 4.021 5 H 0.135 0.865 6 N -0.304 5.304 7 C -0.068 4.068 8 C 0.236 3.764 9 O -0.500 6.500 10 N -0.233 5.233 11 C -0.457 4.457 12 H 0.071 0.929 13 C -0.217 4.217 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.180 1.180 17 H -0.203 1.203 18 H -0.152 1.152 19 C -0.199 4.199 20 C -0.011 4.011 21 N -0.329 5.329 22 C 0.383 3.617 23 O -0.457 6.457 24 C -0.152 4.152 25 C -0.386 4.386 26 S 0.549 5.451 27 C -0.303 4.303 28 N -0.176 5.176 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.203 0.797 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 18.903 -5.220 31.602 37.192 hybrid contribution -0.211 -0.137 -1.657 1.676 sum 18.692 -5.357 29.945 35.705 Atomic orbital electron populations 1.21771 0.95143 1.01292 1.01592 1.21510 0.94675 0.95798 0.84150 0.91148 1.22605 0.94372 0.95535 0.89588 0.86514 1.59954 1.16435 1.53976 1.00065 1.21678 0.93893 1.04107 0.87157 1.21051 0.90803 0.80938 0.83616 1.90560 1.22816 1.55050 1.81588 1.42015 1.08134 1.67258 1.05856 1.18996 0.89518 1.49645 0.87550 0.92881 1.26168 1.04742 0.96155 0.94609 1.69814 1.35752 1.50072 1.02061 0.85334 0.76715 0.80097 0.79160 1.17995 1.20302 1.15204 1.23593 1.03018 0.97023 0.96258 1.22591 0.94407 0.89187 0.94899 1.48427 1.49477 1.30940 1.04106 1.17193 0.79841 0.83229 0.81478 1.90783 1.40652 1.30278 1.83943 1.20220 1.04159 0.97745 0.93054 1.26873 1.06987 1.07505 0.97187 1.82724 1.37399 1.15294 1.09677 1.29236 1.04372 1.05835 0.90842 1.67105 1.11206 1.06763 1.32526 0.93968 0.90991 0.93598 0.83206 0.86509 0.89611 0.77374 0.91212 0.87040 0.91277 0.90023 0.87881 0.79735 0.74130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.27 71.98 0.60 -3.61 16 2 C 0.14 3.61 3.47 45.34 0.16 3.77 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.09 1.85 3.15 46.10 0.15 2.00 16 5 H 0.12 1.94 7.83 -2.39 -0.02 1.92 16 6 N -0.67 -18.85 4.41 -489.44 -2.16 -21.00 16 7 C 0.06 1.79 6.03 85.56 0.52 2.30 16 8 C 0.45 19.74 7.82 87.66 0.69 20.42 16 9 O -0.62 -34.01 15.78 -3.08 -0.05 -34.05 16 10 N -0.59 -27.34 5.09 -306.97 -1.56 -28.90 16 11 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 12 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 13 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 14 N -0.94 -56.70 13.96 21.66 0.30 -56.40 16 15 Si 0.97 38.33 27.74 68.60 1.90 40.24 16 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 17 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 19 C -0.16 -2.60 6.67 31.99 0.21 -2.39 16 20 C 0.11 1.91 6.04 86.86 0.52 2.44 16 21 N -0.60 -14.29 3.08 -792.06 -2.44 -16.73 16 22 C 0.60 16.27 7.61 86.62 0.66 16.93 16 23 O -0.58 -19.62 15.60 -4.14 -0.06 -19.69 16 24 C -0.02 -0.34 6.61 40.56 0.27 -0.08 16 25 C -0.24 -3.78 10.62 67.12 0.71 -3.06 16 26 S 0.29 1.81 22.97 -56.49 -1.30 0.51 16 27 C 0.00 -0.03 12.17 130.71 1.59 1.56 16 28 N -0.46 -7.16 7.33 -193.03 -1.42 -8.58 16 29 H 0.04 1.39 6.74 -2.39 -0.02 1.38 16 30 H 0.07 2.38 7.43 -2.39 -0.02 2.37 16 31 H 0.04 1.37 7.97 -2.39 -0.02 1.35 16 32 H 0.35 10.74 7.45 -89.69 -0.67 10.07 16 33 H 0.12 2.72 8.08 -2.39 -0.02 2.71 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.39 14.71 5.76 -92.71 -0.53 14.18 16 36 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.30 7.77 -2.39 -0.02 1.28 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.77 6.02 -2.39 -0.01 1.76 16 41 H 0.19 2.88 8.03 -2.91 -0.02 2.86 16 42 H 0.24 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: -1.00 -85.64 360.22 0.43 -85.21 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.18 Total: 37.99 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 7.39 Total: 21.40 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.28 Total: -131.62 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.24 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.30 Total: 0.51 kcal Total: -85.64 0.43 -85.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571453015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.485 kcal (2) G-P(sol) polarization free energy of solvation -85.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds