Wall clock time and date at job start Tue Mar 31 2020 20:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46885 * 2 1 4 4 N 1.46502 * 109.47205 * 119.99259 * 2 1 3 5 5 C 1.34784 * 120.00199 * 275.00300 * 4 2 1 6 6 O 1.21286 * 119.99623 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99758 * 179.97438 * 5 4 2 8 8 S 1.81007 * 109.46725 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99891 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.38795 * 119.99560 * 179.97438 * 9 8 7 12 12 N 1.31640 * 119.99389 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00580 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47157 * 89.99635 * 13 11 9 15 15 H 1.48493 * 109.47049 * 209.99920 * 13 11 9 16 16 H 1.48507 * 109.46883 * 329.99775 * 13 11 9 17 17 C 1.52988 * 109.47245 * 239.99593 * 2 1 3 18 18 H 1.09004 * 109.47559 * 174.99710 * 17 2 1 19 19 C 1.53001 * 109.47198 * 294.99632 * 17 2 1 20 20 N 1.46500 * 109.47704 * 54.99663 * 17 2 1 21 21 C 1.34768 * 120.00623 * 154.99776 * 20 17 2 22 22 O 1.21520 * 119.99685 * 0.02562 * 21 20 17 23 23 C 1.48150 * 120.00314 * 180.02562 * 21 20 17 24 24 C 1.39445 * 120.09810 * 180.02562 * 23 21 20 25 25 N 1.32078 * 119.87467 * 180.02562 * 24 23 21 26 26 C 1.32138 * 120.06811 * 0.02562 * 25 24 23 27 27 C 1.38730 * 120.19753 * 359.97438 * 26 25 24 28 28 N 1.31792 * 120.12737 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47268 * 300.00476 * 1 2 3 31 31 H 1.09001 * 109.47311 * 60.00579 * 1 2 3 32 32 H 0.97002 * 119.99834 * 95.00274 * 4 2 1 33 33 H 1.08998 * 109.47279 * 299.99683 * 7 5 4 34 34 H 1.08993 * 109.47457 * 60.00394 * 7 5 4 35 35 H 0.97001 * 119.99668 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.46835 * 60.00098 * 19 17 2 37 37 H 1.09001 * 109.47247 * 180.02562 * 19 17 2 38 38 H 1.09001 * 109.47331 * 300.00353 * 19 17 2 39 39 H 0.97000 * 119.99493 * 335.00957 * 20 17 2 40 40 H 1.08005 * 120.06274 * 359.74120 * 24 23 21 41 41 H 1.08007 * 119.89965 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.93286 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8589 1.1589 2.4114 7 6 2.6488 -0.7284 3.5878 8 16 2.7105 0.4350 4.9731 9 6 3.3136 -0.6301 6.2406 10 1 3.5221 -1.6668 6.0209 11 6 3.5207 -0.1368 7.5213 12 7 3.9708 -0.9327 8.4683 13 14 3.1594 1.6561 7.9014 14 1 1.7487 1.7935 8.3448 15 1 4.0653 2.1256 8.9803 16 1 3.3768 2.4743 6.6814 17 6 2.0400 -0.7213 -1.2491 18 1 3.1263 -0.6444 -1.2951 19 6 1.6353 -2.1955 -1.1877 20 7 1.4559 -0.1039 -2.4423 21 6 2.0912 -0.1941 -3.6274 22 8 3.1485 -0.7879 -3.7063 23 6 1.5007 0.4307 -4.8340 24 6 2.1561 0.3382 -6.0613 25 7 1.6260 0.8973 -7.1341 26 6 0.4769 1.5436 -7.0445 27 6 -0.1776 1.6375 -5.8249 28 7 0.3444 1.0825 -4.7495 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 2.2491 -1.6316 1.1528 33 1 1.9759 -1.5502 3.8328 34 1 3.6479 -1.1209 3.3988 35 1 4.1152 -0.5880 9.3634 36 1 0.5490 -2.2725 -1.1418 37 1 1.9991 -2.7095 -2.0774 38 1 2.0699 -2.6550 -0.2999 39 1 0.6118 0.3699 -2.3794 40 1 3.0978 -0.1857 -6.1337 41 1 0.0461 2.0002 -7.9234 42 1 -1.1163 2.1671 -5.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571750488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:50 Heat of formation + Delta-G solvation = -21.279027 kcal Electronic energy + Delta-G solvation = -25605.929711 eV Core-core repulsion = 21712.735636 eV Total energy + Delta-G solvation = -3893.194075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84205 -40.31639 -39.33795 -37.12297 -35.14431 -34.09315 -32.45268 -32.42413 -31.31805 -29.83518 -28.63178 -26.24840 -25.63325 -25.25660 -24.69568 -22.07933 -20.73426 -20.06777 -19.00167 -18.22578 -17.84547 -17.39231 -16.65561 -16.32504 -16.20181 -15.79531 -15.46766 -15.15008 -14.95743 -14.84460 -14.59722 -14.47096 -13.85392 -13.54320 -13.42398 -13.29170 -12.91740 -12.79287 -12.53961 -12.36268 -12.14018 -12.04651 -11.94056 -11.34630 -11.27413 -11.17367 -11.01817 -10.84567 -10.61859 -10.10861 -9.87513 -9.77438 -9.60682 -9.53315 -9.11522 -9.00564 -8.51860 -6.93198 -6.29790 -4.01758 -0.23446 0.39567 2.18545 2.36074 2.78270 2.91787 3.17781 3.25505 3.32091 3.38670 3.49532 3.56500 3.64197 3.79899 4.16292 4.27043 4.32141 4.50156 4.55358 4.58281 4.71071 4.81449 4.88483 5.06984 5.09260 5.13012 5.21478 5.36499 5.44917 5.55442 5.61861 5.71212 5.74261 5.84841 5.96974 5.99524 6.10726 6.43891 6.46740 6.87227 7.09012 7.52480 7.63184 7.93247 8.40803 8.42737 9.16308 10.79400 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.001864 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.071306 B =15015.126948 C =15371.200372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.730 5.730 5 C 0.534 3.466 6 O -0.517 6.517 7 C -0.125 4.125 8 S -0.141 6.141 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C 0.134 3.866 18 H 0.100 0.900 19 C -0.168 4.168 20 N -0.700 5.700 21 C 0.577 3.423 22 O -0.523 6.523 23 C 0.029 3.971 24 C 0.111 3.889 25 N -0.439 5.439 26 C 0.074 3.926 27 C 0.051 3.949 28 N -0.412 5.412 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.400 0.600 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 1.084 -31.426 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.386 5.386 5 C 0.320 3.680 6 O -0.391 6.391 7 C -0.275 4.275 8 S 0.085 5.915 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C 0.029 3.971 18 H 0.118 0.882 19 C -0.227 4.227 20 N -0.353 5.353 21 C 0.361 3.639 22 O -0.398 6.398 23 C -0.112 4.112 24 C -0.048 4.048 25 N -0.153 5.153 26 C -0.087 4.087 27 C -0.111 4.111 28 N -0.130 5.130 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.452 2.568 -31.143 32.647 hybrid contribution -0.181 -0.910 0.342 0.989 sum -9.633 1.658 -30.802 32.315 Atomic orbital electron populations 1.22278 0.95017 1.02675 1.02782 1.20964 0.94589 0.97735 0.83487 0.88677 1.46038 1.69441 1.14110 1.09034 1.20306 0.76754 0.87208 0.83765 1.90703 1.48278 1.15689 1.84408 1.23283 1.04582 1.03502 0.96157 1.84790 1.87163 1.16461 1.03068 1.22316 1.50640 0.98683 0.95292 0.89358 1.24716 0.93359 0.98284 0.94960 1.69944 1.43403 1.35771 1.02516 0.86733 0.79298 0.85237 0.80564 1.19219 1.19941 1.15935 1.21218 0.99779 0.92857 0.83275 0.88240 1.22260 1.02450 0.94992 1.02959 1.45903 1.26200 1.55923 1.07299 1.17616 0.84093 0.79794 0.82426 1.90837 1.21584 1.42372 1.85026 1.22183 0.93706 0.99435 0.95907 1.23892 0.99937 0.93718 0.87279 1.68666 1.10238 1.06085 1.30346 1.24180 0.91229 0.93985 0.99335 1.23897 1.01066 0.97265 0.88885 1.68334 1.08671 1.04200 1.31815 0.91723 0.90974 0.91987 0.76366 0.88406 0.88347 0.91940 0.91522 0.91502 0.91070 0.74976 0.79886 0.80505 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.00 37.16 0.33 -1.21 16 2 C 0.14 1.42 2.62 -67.94 -0.18 1.24 16 3 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 4 N -0.73 -8.57 4.99 -53.81 -0.27 -8.84 16 5 C 0.53 8.98 7.81 -10.98 -0.09 8.90 16 6 O -0.52 -10.62 15.52 5.55 0.09 -10.53 16 7 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 8 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 9 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 10 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 11 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 12 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 13 Si 0.86 21.67 27.74 -169.99 -4.72 16.96 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 17 C 0.13 1.18 2.62 -67.94 -0.18 1.00 16 18 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 19 C -0.17 -1.27 9.00 37.16 0.33 -0.93 16 20 N -0.70 -5.87 4.98 -54.66 -0.27 -6.14 16 21 C 0.58 5.64 7.78 -12.19 -0.09 5.54 16 22 O -0.52 -6.42 16.01 5.35 0.09 -6.34 16 23 C 0.03 0.24 6.75 -82.84 -0.56 -0.32 16 24 C 0.11 0.87 10.77 -17.00 -0.18 0.69 16 25 N -0.44 -3.21 10.49 -12.71 -0.13 -3.34 16 26 C 0.07 0.32 11.23 -17.24 -0.19 0.13 16 27 C 0.05 0.23 11.22 -17.39 -0.20 0.03 16 28 N -0.41 -2.93 9.71 -9.62 -0.09 -3.03 16 29 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.44 6.29 -51.93 -0.33 0.12 16 32 H 0.40 3.67 6.58 -40.82 -0.27 3.40 16 33 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 34 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.47 6.29 -51.93 -0.33 0.14 16 39 H 0.41 2.99 5.93 -40.82 -0.24 2.75 16 40 H 0.18 1.29 7.65 -52.48 -0.40 0.89 16 41 H 0.18 0.14 8.06 -52.48 -0.42 -0.28 16 42 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -36.26 369.46 -6.67 -42.94 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.15 Total: 2.87 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.56 Total: 1.05 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.01 Total: -47.00 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.17 Total: -16.87 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.26 -6.67 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571750488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.657 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds