Wall clock time and date at job start Tue Mar 31 2020 20:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47138 * 2 1 4 4 C 1.53007 * 109.47253 * 119.99218 * 2 1 3 5 5 N 1.46501 * 109.47124 * 175.00366 * 4 2 1 6 6 C 1.46494 * 119.99777 * 270.00117 * 5 4 2 7 7 C 1.34776 * 120.00022 * 90.00072 * 5 4 2 8 8 O 1.21481 * 120.00025 * 356.94143 * 7 5 4 9 9 C 1.48450 * 119.99805 * 176.94294 * 7 5 4 10 10 C 1.39535 * 120.54867 * 186.71116 * 9 7 5 11 11 C 1.38763 * 118.26430 * 179.97438 * 10 9 7 12 12 N 1.32208 * 119.14564 * 0.02562 * 11 10 9 13 13 C 1.31877 * 121.03871 * 359.97438 * 12 11 10 14 14 N 1.31583 * 121.91545 * 359.71837 * 13 12 11 15 15 N 1.46495 * 109.47296 * 239.99418 * 2 1 3 16 16 C 1.34779 * 119.99827 * 84.99824 * 15 2 1 17 17 O 1.21274 * 120.00233 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99622 * 179.97438 * 16 15 2 19 19 S 1.81006 * 109.46877 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99838 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99498 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99523 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47194 * 59.99939 * 24 22 20 26 26 H 1.48497 * 109.46894 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46977 * 299.99957 * 24 22 20 28 28 H 1.08991 * 109.46930 * 60.00899 * 1 2 3 29 29 H 1.09003 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47005 * 300.00300 * 1 2 3 31 31 H 1.09004 * 109.46965 * 295.00322 * 4 2 1 32 32 H 1.09001 * 109.46859 * 54.99996 * 4 2 1 33 33 H 1.09001 * 109.47694 * 96.04207 * 6 5 4 34 34 H 1.09000 * 109.47014 * 216.04080 * 6 5 4 35 35 H 1.09002 * 109.47284 * 336.03914 * 6 5 4 36 36 H 1.07996 * 120.87034 * 0.02562 * 10 9 7 37 37 H 1.07996 * 120.42833 * 180.02562 * 11 10 9 38 38 H 1.07995 * 119.04307 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00118 * 264.99421 * 15 2 1 40 40 H 1.09004 * 109.47608 * 299.99872 * 18 16 15 41 41 H 1.08999 * 109.47332 * 60.00252 * 18 16 15 42 42 H 0.97000 * 119.99831 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5001 -0.8262 1.1907 6 6 4.1259 -1.9917 0.5615 7 6 4.2676 0.1495 1.7157 8 8 3.7498 1.1419 2.1876 9 6 5.7456 0.0114 1.7171 10 6 6.5445 0.9443 2.3793 11 6 7.9207 0.7690 2.3506 12 7 8.4245 -0.2669 1.7018 13 6 7.6405 -1.1304 1.0861 14 7 6.3305 -1.0074 1.0918 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8590 1.1584 -2.4116 18 6 2.6500 -0.7288 -3.5873 19 16 2.7114 0.4342 -4.9729 20 6 3.3145 -0.6312 -6.2401 21 1 3.5231 -1.6677 -6.0202 22 6 3.5204 -0.1384 -7.5213 23 7 3.2656 1.1248 -7.7894 24 14 4.1590 -1.2681 -8.8649 25 1 3.2076 -2.3912 -9.0611 26 1 4.2923 -0.5046 -10.1316 27 1 5.4856 -1.8064 -8.4700 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -0.1580 2.1371 32 1 1.6054 -1.7197 1.2954 33 1 4.3777 -1.7552 -0.4723 34 1 5.0332 -2.2548 1.1053 35 1 3.4325 -2.8325 0.5833 36 1 6.1032 1.7805 2.9012 37 1 8.5719 1.4698 2.8517 38 1 8.0865 -1.9653 0.5663 39 1 2.2492 -1.6319 -1.1524 40 1 3.6494 -1.1206 -3.3977 41 1 1.9778 -1.5512 -3.8323 42 1 3.4099 1.4692 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572292029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:03 Heat of formation + Delta-G solvation = -1.237984 kcal Electronic energy + Delta-G solvation = -26596.997917 eV Core-core repulsion = 22704.672887 eV Total energy + Delta-G solvation = -3892.325030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68015 -40.08149 -39.05488 -36.61077 -34.97035 -33.86854 -32.50270 -32.42797 -31.57705 -28.65103 -27.68078 -27.10124 -25.48475 -24.95724 -24.64886 -22.03702 -20.62992 -20.26326 -18.28730 -17.89385 -17.86006 -16.51235 -16.49661 -16.37497 -16.00257 -15.72773 -15.45369 -14.89343 -14.80306 -14.69272 -14.24022 -14.22378 -13.97045 -13.43793 -13.20810 -13.04383 -12.93468 -12.65646 -12.54459 -12.16714 -12.00450 -11.83384 -11.29467 -11.15672 -11.11848 -11.04319 -11.03837 -10.76958 -10.71357 -10.17839 -9.82532 -9.49527 -9.36695 -9.12366 -9.05180 -8.72232 -8.23150 -6.49609 -6.21250 -3.91917 0.09608 0.48576 2.37736 2.48413 3.04815 3.13053 3.23154 3.27449 3.31194 3.38417 3.48413 3.72120 3.72608 3.99141 4.20672 4.39038 4.59395 4.61143 4.73863 4.95172 5.09568 5.12802 5.13632 5.15782 5.21161 5.36129 5.37622 5.49065 5.59667 5.67133 5.70840 5.88639 5.93222 6.03186 6.11803 6.13156 6.26173 6.37803 6.66418 6.91811 7.48439 7.59076 7.71373 7.72257 8.34998 8.65135 9.23731 10.86111 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.003083 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.512067 B = 9080.635669 C =10799.973638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.093 0.907 4 C 0.107 3.893 5 N -0.588 5.588 6 C 0.065 3.935 7 C 0.568 3.432 8 O -0.522 6.522 9 C 0.135 3.865 10 C -0.169 4.169 11 C 0.152 3.848 12 N -0.507 5.507 13 C 0.291 3.709 14 N -0.488 5.488 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.204 0.796 39 H 0.394 0.606 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -8.467 24.152 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.111 0.889 4 C -0.016 4.016 5 N -0.319 5.319 6 C -0.077 4.077 7 C 0.353 3.647 8 O -0.397 6.397 9 C -0.013 4.013 10 C -0.192 4.192 11 C -0.015 4.015 12 N -0.221 5.221 13 C 0.003 3.997 14 N -0.205 5.205 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.389 6.389 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.179 0.821 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.228 0.772 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.843 -6.592 23.699 24.897 hybrid contribution 0.524 -1.926 -0.573 2.077 sum 4.368 -8.518 23.126 25.029 Atomic orbital electron populations 1.22119 0.94573 1.02126 1.03128 1.21300 0.94317 0.98440 0.83909 0.88922 1.22002 0.78635 1.02057 0.98881 1.47623 1.06371 1.21566 1.56337 1.22591 0.99730 0.85884 0.99520 1.17833 0.84863 0.83165 0.78809 1.90813 1.73219 1.29015 1.46636 1.21603 0.95126 0.91223 0.93344 1.22990 0.95525 1.00774 0.99894 1.23398 0.92760 0.93400 0.91948 1.68372 1.41683 1.03852 1.08167 1.25201 0.85492 0.96609 0.92351 1.68834 1.13274 1.20692 1.17676 1.46067 1.69484 1.13632 1.09481 1.20292 0.76880 0.87249 0.83743 1.90703 1.48168 1.15724 1.84346 1.23525 1.03480 1.04827 0.98468 1.85426 1.86291 1.12864 0.98723 1.22827 1.51122 0.98106 0.96406 0.91010 1.24988 0.95091 0.95527 0.97933 1.70008 1.45447 1.13229 1.21602 0.86233 0.79310 0.80029 0.79980 1.19927 1.20805 1.19939 0.91236 0.92438 0.91637 0.88270 0.89433 0.91806 0.87111 0.91837 0.82146 0.80552 0.77956 0.77212 0.89459 0.89315 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.13 1.54 2.88 -67.93 -0.20 1.34 16 3 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 4 C 0.11 0.97 5.05 -4.04 -0.02 0.95 16 5 N -0.59 -5.94 2.73 -182.46 -0.50 -6.44 16 6 C 0.07 0.52 8.00 59.84 0.48 1.00 16 7 C 0.57 6.94 7.67 -12.05 -0.09 6.85 16 8 O -0.52 -7.66 16.05 5.38 0.09 -7.57 16 9 C 0.13 1.44 6.66 -82.64 -0.55 0.89 16 10 C -0.17 -1.50 9.72 -38.90 -0.38 -1.88 16 11 C 0.15 1.14 11.31 -17.20 -0.19 0.95 16 12 N -0.51 -4.55 10.42 -14.60 -0.15 -4.70 16 13 C 0.29 2.44 12.28 -92.26 -1.13 1.31 16 14 N -0.49 -4.69 6.20 -11.14 -0.07 -4.76 16 15 N -0.73 -9.72 4.44 -53.81 -0.24 -9.96 16 16 C 0.53 10.04 7.81 -10.98 -0.09 9.95 16 17 O -0.52 -11.98 15.52 5.56 0.09 -11.89 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.90 7.47 -51.93 -0.39 0.51 16 32 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 33 H 0.06 0.61 7.77 -51.93 -0.40 0.21 16 34 H 0.11 0.87 5.17 -52.28 -0.27 0.60 16 35 H 0.06 0.35 7.83 -51.93 -0.41 -0.05 16 36 H 0.16 1.25 7.75 -52.49 -0.41 0.84 16 37 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.39 4.05 7.20 -40.82 -0.29 3.76 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -37.80 373.59 -8.53 -46.33 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.47 Total: 2.30 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.40 Total: 4.12 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.22 Total: -51.46 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.80 -8.53 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572292029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.089 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds