Wall clock time and date at job start Tue Mar 31 2020 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47138 * 2 1 4 4 C 1.53007 * 109.47253 * 119.99218 * 2 1 3 5 5 N 1.46501 * 109.47124 * 175.00366 * 4 2 1 6 6 C 1.46494 * 119.99777 * 270.00117 * 5 4 2 7 7 C 1.34776 * 120.00022 * 90.00072 * 5 4 2 8 8 O 1.21481 * 120.00025 * 356.94143 * 7 5 4 9 9 C 1.48450 * 119.99805 * 176.94294 * 7 5 4 10 10 C 1.39535 * 120.54867 * 186.71116 * 9 7 5 11 11 C 1.38763 * 118.26430 * 179.97438 * 10 9 7 12 12 N 1.32208 * 119.14564 * 0.02562 * 11 10 9 13 13 C 1.31877 * 121.03871 * 359.97438 * 12 11 10 14 14 N 1.31583 * 121.91545 * 359.71837 * 13 12 11 15 15 N 1.46495 * 109.47296 * 239.99418 * 2 1 3 16 16 C 1.34779 * 119.99827 * 84.99824 * 15 2 1 17 17 O 1.21274 * 120.00233 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99622 * 179.97438 * 16 15 2 19 19 S 1.81006 * 109.46877 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99838 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99498 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99523 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47194 * 59.99939 * 24 22 20 26 26 H 1.48497 * 109.46894 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46977 * 299.99957 * 24 22 20 28 28 H 1.08991 * 109.46930 * 60.00899 * 1 2 3 29 29 H 1.09003 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47005 * 300.00300 * 1 2 3 31 31 H 1.09004 * 109.46965 * 295.00322 * 4 2 1 32 32 H 1.09001 * 109.46859 * 54.99996 * 4 2 1 33 33 H 1.09001 * 109.47694 * 96.04207 * 6 5 4 34 34 H 1.09000 * 109.47014 * 216.04080 * 6 5 4 35 35 H 1.09002 * 109.47284 * 336.03914 * 6 5 4 36 36 H 1.07996 * 120.87034 * 0.02562 * 10 9 7 37 37 H 1.07996 * 120.42833 * 180.02562 * 11 10 9 38 38 H 1.07995 * 119.04307 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00118 * 264.99421 * 15 2 1 40 40 H 1.09004 * 109.47608 * 299.99872 * 18 16 15 41 41 H 1.08999 * 109.47332 * 60.00252 * 18 16 15 42 42 H 0.97000 * 119.99831 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5001 -0.8262 1.1907 6 6 4.1259 -1.9917 0.5615 7 6 4.2676 0.1495 1.7157 8 8 3.7498 1.1419 2.1876 9 6 5.7456 0.0114 1.7171 10 6 6.5445 0.9443 2.3793 11 6 7.9207 0.7690 2.3506 12 7 8.4245 -0.2669 1.7018 13 6 7.6405 -1.1304 1.0861 14 7 6.3305 -1.0074 1.0918 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8590 1.1584 -2.4116 18 6 2.6500 -0.7288 -3.5873 19 16 2.7114 0.4342 -4.9729 20 6 3.3145 -0.6312 -6.2401 21 1 3.5231 -1.6677 -6.0202 22 6 3.5204 -0.1384 -7.5213 23 7 3.2656 1.1248 -7.7894 24 14 4.1590 -1.2681 -8.8649 25 1 3.2076 -2.3912 -9.0611 26 1 4.2923 -0.5046 -10.1316 27 1 5.4856 -1.8064 -8.4700 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -0.1580 2.1371 32 1 1.6054 -1.7197 1.2954 33 1 4.3777 -1.7552 -0.4723 34 1 5.0332 -2.2548 1.1053 35 1 3.4325 -2.8325 0.5833 36 1 6.1032 1.7805 2.9012 37 1 8.5719 1.4698 2.8517 38 1 8.0865 -1.9653 0.5663 39 1 2.2492 -1.6319 -1.1524 40 1 3.6494 -1.1206 -3.3977 41 1 1.9778 -1.5512 -3.8323 42 1 3.4099 1.4692 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572292029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:02 Heat of formation + Delta-G solvation = -27.884897 kcal Electronic energy + Delta-G solvation = -26598.153414 eV Core-core repulsion = 22704.672887 eV Total energy + Delta-G solvation = -3893.480527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.38685 -41.09929 -40.30138 -37.68067 -35.91903 -34.70001 -34.58801 -33.18701 -32.82140 -30.12323 -28.47159 -27.85815 -27.66379 -25.65685 -25.33894 -23.09802 -21.70963 -21.37445 -19.86094 -19.04710 -18.61061 -17.96062 -17.53483 -17.27231 -16.88495 -16.73658 -16.48377 -16.43818 -16.33585 -15.86932 -15.51378 -15.04330 -14.88385 -14.71085 -14.55265 -14.27703 -13.95681 -13.82890 -13.45403 -13.22980 -13.16910 -13.00162 -12.86743 -12.84731 -12.60686 -12.13996 -11.95059 -11.79573 -11.75076 -11.63539 -11.13265 -10.95682 -10.86087 -10.28872 -10.26943 -10.18377 -9.67766 -8.68407 -8.34894 -6.13782 -0.64599 -0.13398 1.25759 1.43871 1.46202 1.53718 1.55621 1.60506 1.73268 2.25483 2.28828 2.68732 2.78292 2.99254 3.17228 3.31338 3.34547 3.69866 3.71579 3.94518 3.99078 4.03259 4.19591 4.29187 4.41946 4.43722 4.47170 4.52451 4.60307 4.63747 4.74480 4.83554 5.00077 5.07461 5.22166 5.33863 5.40733 5.47280 5.51322 5.70284 6.10098 6.18988 6.48906 6.76418 6.92061 7.06010 7.25359 8.74172 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.003083 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.512067 B = 9080.635669 C =10799.973638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.047 0.953 4 C 0.112 3.888 5 N -0.586 5.586 6 C 0.062 3.938 7 C 0.557 3.443 8 O -0.559 6.559 9 C 0.111 3.889 10 C -0.175 4.175 11 C 0.159 3.841 12 N -0.521 5.521 13 C 0.285 3.715 14 N -0.492 5.492 15 N -0.703 5.703 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.126 4.126 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.165 0.835 37 H 0.212 0.788 38 H 0.231 0.769 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -11.912 25.082 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.065 0.935 4 C -0.010 4.010 5 N -0.316 5.316 6 C -0.079 4.079 7 C 0.344 3.656 8 O -0.437 6.437 9 C -0.036 4.036 10 C -0.198 4.198 11 C -0.008 4.008 12 N -0.235 5.235 13 C -0.002 4.002 14 N -0.209 5.209 15 N -0.357 5.357 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.277 4.277 19 S 0.071 5.929 20 C -0.694 4.694 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.183 0.817 37 H 0.228 0.772 38 H 0.247 0.753 39 H 0.252 0.748 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.618 -10.118 24.665 27.057 hybrid contribution 0.295 -0.868 -0.724 1.168 sum 4.913 -10.986 23.941 26.796 Atomic orbital electron populations 1.22057 0.93070 1.03804 1.02328 1.21377 0.95444 0.96527 0.84484 0.93479 1.22092 0.78205 1.04002 0.96731 1.47792 1.06768 1.21521 1.55484 1.22717 1.00952 0.85928 0.98335 1.18216 0.85781 0.83065 0.78570 1.90781 1.74033 1.30430 1.48429 1.21602 0.94672 0.92527 0.94771 1.23166 0.96181 1.00650 0.99823 1.23954 0.92559 0.93288 0.91007 1.68457 1.41971 1.04404 1.08631 1.25808 0.85159 0.97171 0.92033 1.68843 1.13842 1.20461 1.17779 1.45775 1.67534 1.14311 1.08112 1.20112 0.76680 0.86571 0.84770 1.90695 1.50772 1.17969 1.85197 1.23347 1.05336 1.03139 0.95891 1.85660 1.86745 1.17526 1.02951 1.23174 1.51014 0.98456 0.96734 0.89741 1.26153 0.95031 0.97201 1.00790 1.70187 1.46832 1.15602 1.22305 0.84996 0.79151 0.77735 0.76070 1.18467 1.20513 1.18546 0.94750 0.89406 0.89796 0.88132 0.84989 0.93292 0.86829 0.88357 0.81716 0.77183 0.75258 0.74839 0.87507 0.86965 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.48 71.98 0.68 -2.42 16 2 C 0.13 2.99 2.88 45.00 0.13 3.12 16 3 H 0.05 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.11 1.76 5.05 86.38 0.44 2.19 16 5 N -0.59 -10.94 2.73 -849.49 -2.32 -13.26 16 6 C 0.06 0.84 8.00 127.77 1.02 1.86 16 7 C 0.56 13.64 7.67 86.97 0.67 14.31 16 8 O -0.56 -16.96 16.05 -3.65 -0.06 -17.02 16 9 C 0.11 2.35 6.66 41.99 0.28 2.63 16 10 C -0.18 -3.06 9.72 22.71 0.22 -2.83 16 11 C 0.16 2.17 11.31 84.76 0.96 3.13 16 12 N -0.52 -8.54 10.42 -200.10 -2.09 -10.62 16 13 C 0.29 4.36 12.28 180.92 2.22 6.58 16 14 N -0.49 -8.94 6.20 -189.16 -1.17 -10.11 16 15 N -0.70 -17.63 4.44 -442.53 -1.96 -19.60 16 16 C 0.53 20.14 7.81 87.66 0.68 20.83 16 17 O -0.57 -27.61 15.52 -3.01 -0.05 -27.65 16 18 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 19 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 20 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 24 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.65 7.47 -2.38 -0.02 1.64 16 32 H 0.13 0.96 7.85 -2.39 -0.02 0.94 16 33 H 0.05 0.83 7.77 -2.39 -0.02 0.81 16 34 H 0.11 1.54 5.17 -3.08 -0.02 1.52 16 35 H 0.10 0.64 7.83 -2.39 -0.02 0.62 16 36 H 0.17 2.61 7.75 -2.91 -0.02 2.59 16 37 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.23 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.41 7.14 7.20 -92.71 -0.67 6.48 16 40 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 41 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -87.83 373.59 2.74 -85.09 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.38 Total: 18.57 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 8.85 Total: 15.42 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -7.25 Total: -109.95 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.11 Total: -44.67 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -87.83 2.74 -85.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572292029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.202 kcal (2) G-P(sol) polarization free energy of solvation -87.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds