Wall clock time and date at job start Tue Mar 31 2020 20:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47084 * 2 1 4 4 C 1.53003 * 109.47085 * 240.00655 * 2 1 3 5 5 N 1.46498 * 109.47157 * 184.99680 * 4 2 1 6 6 C 1.46498 * 119.99865 * 89.99702 * 5 4 2 7 7 C 1.34777 * 120.00126 * 269.99603 * 5 4 2 8 8 O 1.21476 * 119.99491 * 5.46990 * 7 5 4 9 9 C 1.48454 * 120.00216 * 185.46615 * 7 5 4 10 10 C 1.39528 * 120.54968 * 186.52980 * 9 7 5 11 11 C 1.38763 * 118.26346 * 180.02562 * 10 9 7 12 12 N 1.32206 * 119.14838 * 359.97438 * 11 10 9 13 13 C 1.31882 * 121.03322 * 0.02562 * 12 11 10 14 14 N 1.31585 * 121.91769 * 359.70814 * 13 12 11 15 15 N 1.46494 * 109.47659 * 120.00372 * 2 1 3 16 16 C 1.34779 * 119.99763 * 275.00368 * 15 2 1 17 17 O 1.21281 * 120.00297 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99724 * 179.97438 * 16 15 2 19 19 S 1.80997 * 109.47077 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00165 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99981 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99943 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99995 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99745 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47331 * 60.00191 * 24 22 20 26 26 H 1.48497 * 109.47026 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47316 * 300.00338 * 24 22 20 28 28 H 1.08998 * 109.46587 * 299.99368 * 1 2 3 29 29 H 1.08996 * 109.47278 * 59.99382 * 1 2 3 30 30 H 1.08997 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46860 * 304.99704 * 4 2 1 32 32 H 1.09004 * 109.47228 * 64.99418 * 4 2 1 33 33 H 1.09004 * 109.47187 * 95.38984 * 6 5 4 34 34 H 1.09004 * 109.47339 * 215.38598 * 6 5 4 35 35 H 1.08998 * 109.47524 * 335.39424 * 6 5 4 36 36 H 1.07998 * 120.87433 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.43086 * 180.02562 * 11 10 9 38 38 H 1.08002 * 119.03995 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00332 * 94.99647 * 15 2 1 40 40 H 1.09000 * 109.47312 * 299.99451 * 18 16 15 41 41 H 1.08997 * 109.47458 * 59.99627 * 18 16 15 42 42 H 0.97002 * 120.00242 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8262 -1.1907 6 6 4.1259 -1.9918 -0.5615 7 6 4.2675 0.1494 -1.7158 8 8 3.7524 1.1610 -2.1480 9 6 5.7424 -0.0122 -1.7658 10 6 6.5577 1.0415 -2.1802 11 6 7.9301 0.8382 -2.2094 12 7 8.4149 -0.3369 -1.8462 13 6 7.6156 -1.3120 -1.4595 14 7 6.3091 -1.1629 -1.4112 15 7 2.0185 -0.6906 1.1960 16 6 2.1472 -0.0183 2.3571 17 8 1.8591 1.1585 2.4115 18 6 2.6491 -0.7289 3.5875 19 16 2.7108 0.4342 4.9729 20 6 3.3126 -0.6315 6.2406 21 1 3.5206 -1.6682 6.0210 22 6 3.5193 -0.1384 7.5216 23 7 3.2653 1.1250 7.7894 24 14 4.1579 -1.2680 8.8653 25 1 5.4840 -1.8071 8.4700 26 1 4.2910 -0.5045 10.1319 27 1 3.2060 -2.3907 9.0622 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6054 -1.7197 -1.2953 32 1 1.7516 -0.1581 -2.1371 33 1 4.3696 -2.7301 -1.3254 34 1 5.0379 -1.6830 -0.0506 35 1 3.4358 -2.4296 0.1598 36 1 6.1319 1.9905 -2.4706 37 1 8.5938 1.6301 -2.5240 38 1 8.0462 -2.2592 -1.1700 39 1 2.2492 -1.6318 1.1525 40 1 1.9762 -1.5507 3.8324 41 1 3.6482 -1.1214 3.3984 42 1 3.4094 1.4695 8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572292030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:04 Heat of formation + Delta-G solvation = -27.552624 kcal Electronic energy + Delta-G solvation = -26572.226562 eV Core-core repulsion = 22678.760443 eV Total energy + Delta-G solvation = -3893.466118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37361 -41.11470 -40.30443 -37.70044 -35.89987 -34.69061 -34.58797 -33.18523 -32.83232 -30.13893 -28.48595 -27.87425 -27.66196 -25.67248 -25.32513 -23.09671 -21.71483 -21.39017 -19.86039 -19.05067 -18.62541 -17.96841 -17.55352 -17.14244 -16.88523 -16.72073 -16.59471 -16.45359 -16.34210 -15.88959 -15.48200 -15.04862 -14.84713 -14.69438 -14.54891 -14.26586 -13.98842 -13.81751 -13.50161 -13.22939 -13.16220 -12.95937 -12.87709 -12.86460 -12.60215 -12.17978 -11.98592 -11.78441 -11.75157 -11.63467 -11.13293 -10.95710 -10.85908 -10.31430 -10.28386 -10.17803 -9.73495 -8.68246 -8.34920 -6.13696 -0.64626 -0.12670 1.25718 1.43751 1.46171 1.53808 1.55519 1.60338 1.71609 2.24366 2.28176 2.71329 2.75764 2.99276 3.17721 3.30744 3.35028 3.66744 3.71728 3.95212 3.97478 4.03059 4.18880 4.28510 4.36342 4.44325 4.47238 4.52611 4.59281 4.65344 4.71705 4.84030 5.00564 5.04534 5.21517 5.29882 5.40758 5.43262 5.47328 5.70720 6.08718 6.18945 6.48012 6.76001 6.92177 7.06060 7.24891 8.74118 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.003051 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.811664 B = 9174.477014 C =10848.112080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.049 0.951 4 C 0.113 3.887 5 N -0.588 5.588 6 C 0.085 3.915 7 C 0.558 3.442 8 O -0.558 6.558 9 C 0.111 3.889 10 C -0.177 4.177 11 C 0.158 3.842 12 N -0.520 5.520 13 C 0.285 3.715 14 N -0.490 5.490 15 N -0.704 5.704 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.127 4.127 19 S -0.155 6.155 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.210 0.790 38 H 0.233 0.767 39 H 0.412 0.588 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -11.666 -24.482 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.068 0.932 4 C -0.009 4.009 5 N -0.318 5.318 6 C -0.057 4.057 7 C 0.345 3.655 8 O -0.435 6.435 9 C -0.036 4.036 10 C -0.200 4.200 11 C -0.009 4.009 12 N -0.234 5.234 13 C -0.002 4.002 14 N -0.207 5.207 15 N -0.360 5.360 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.278 4.278 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.103 0.897 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.180 0.820 37 H 0.226 0.774 38 H 0.249 0.751 39 H 0.252 0.748 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.535 -9.965 -24.243 26.601 hybrid contribution 0.329 -0.811 0.814 1.195 sum 4.864 -10.776 -23.429 26.243 Atomic orbital electron populations 1.22060 0.93092 1.03788 1.02356 1.21384 0.95446 0.96637 0.84369 0.93248 1.22053 0.78113 1.03932 0.96815 1.47784 1.06811 1.21511 1.55733 1.22349 0.98642 0.86378 0.98323 1.18217 0.85737 0.83092 0.78494 1.90784 1.74036 1.29034 1.49694 1.21561 0.94637 0.91628 0.95789 1.23165 0.96117 1.01352 0.99372 1.23917 0.92757 0.94903 0.89359 1.68456 1.41784 1.02047 1.11146 1.25799 0.84910 0.99096 0.90374 1.68853 1.14687 1.22921 1.14257 1.45886 1.67649 1.14291 1.08186 1.20118 0.76677 0.86587 0.84747 1.90699 1.50668 1.17950 1.85173 1.23353 1.05382 1.03172 0.95905 1.85659 1.86793 1.17438 1.02907 1.23176 1.51035 0.98435 0.96760 0.89749 1.26144 0.95034 0.97185 1.00784 1.70183 1.46829 1.15576 1.22310 0.85001 0.79141 0.77745 0.76100 1.18564 1.20520 1.18493 0.94691 0.89805 0.89452 0.85078 0.88151 0.89968 0.90169 0.90176 0.82011 0.77356 0.75076 0.74847 0.86947 0.87448 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.48 71.98 0.68 -2.40 16 2 C 0.13 2.95 2.88 44.99 0.13 3.08 16 3 H 0.05 1.63 7.58 -2.38 -0.02 1.61 16 4 C 0.11 1.77 4.99 86.38 0.43 2.20 16 5 N -0.59 -10.94 2.73 -849.48 -2.32 -13.26 16 6 C 0.08 1.14 8.67 127.77 1.11 2.24 16 7 C 0.56 13.63 7.66 86.97 0.67 14.30 16 8 O -0.56 -16.97 16.08 -3.64 -0.06 -17.03 16 9 C 0.11 2.34 6.59 41.99 0.28 2.62 16 10 C -0.18 -3.21 9.72 22.71 0.22 -2.99 16 11 C 0.16 2.23 11.31 84.76 0.96 3.19 16 12 N -0.52 -8.50 10.42 -200.08 -2.09 -10.58 16 13 C 0.29 4.18 12.27 180.92 2.22 6.40 16 14 N -0.49 -8.56 6.38 -189.15 -1.21 -9.77 16 15 N -0.70 -17.34 4.52 -442.53 -2.00 -19.34 16 16 C 0.53 19.85 7.81 87.66 0.68 20.54 16 17 O -0.57 -27.22 15.52 -3.03 -0.05 -27.27 16 18 C -0.13 -4.98 6.16 71.24 0.44 -4.55 16 19 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 20 C -0.55 -31.11 9.50 67.96 0.65 -30.46 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 24 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 0.98 8.07 -2.38 -0.02 0.96 16 32 H 0.10 1.65 7.50 -2.39 -0.02 1.63 16 33 H 0.08 0.85 8.02 -2.38 -0.02 0.83 16 34 H 0.08 1.37 5.79 -2.38 -0.01 1.35 16 35 H 0.08 0.74 5.77 -2.39 -0.01 0.73 16 36 H 0.16 2.78 7.75 -2.91 -0.02 2.75 16 37 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.23 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.41 6.90 6.21 -92.71 -0.58 6.33 16 40 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -86.90 372.49 2.85 -84.06 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.48 Total: 18.41 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 8.93 Total: 15.41 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -7.33 Total: -109.07 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.11 Total: -44.30 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -86.90 2.85 -84.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572292030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.503 kcal (2) G-P(sol) polarization free energy of solvation -86.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds