Wall clock time and date at job start Tue Mar 31 2020 20:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.34769 * 120.00324 * 154.99740 * 6 4 2 8 8 O 1.21604 * 120.00317 * 0.02562 * 7 6 4 9 9 C 1.47434 * 120.00308 * 179.97438 * 7 6 4 10 10 C 1.41285 * 126.40875 * 0.02942 * 9 7 6 11 11 N 1.30451 * 108.02060 * 179.97438 * 10 9 7 12 12 N 1.39937 * 108.89628 * 359.97438 * 11 10 9 13 13 H 0.96996 * 125.75243 * 180.02562 * 12 11 10 14 14 C 1.34261 * 108.49028 * 359.75099 * 12 11 10 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34781 * 125.64824 * 61.60935 * 17 2 1 19 19 O 1.21274 * 119.99817 * 359.97438 * 18 17 2 20 20 C 1.50698 * 119.99533 * 179.97438 * 18 17 2 21 21 S 1.81008 * 109.46841 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99937 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00079 * 359.97438 * 22 21 20 24 24 C 1.38792 * 119.99814 * 179.97438 * 22 21 20 25 25 N 1.31628 * 120.00054 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00131 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47033 * 90.00015 * 26 24 22 28 28 H 1.48506 * 109.46995 * 209.99843 * 26 24 22 29 29 H 1.48494 * 109.46970 * 330.00041 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 1.07996 * 125.99722 * 359.93923 * 10 9 7 35 35 H 1.08000 * 126.28969 * 180.24111 * 14 12 11 36 36 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 37 37 H 1.08994 * 111.03335 * 82.58852 * 15 4 2 38 38 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 39 39 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 40 40 H 1.09002 * 109.47163 * 299.98946 * 20 18 17 41 41 H 1.08998 * 109.47593 * 59.99780 * 20 18 17 42 42 H 0.97003 * 120.00383 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4581 -0.1932 3.5790 8 8 2.1285 -1.3255 3.8757 9 6 2.8617 0.7568 4.6317 10 6 3.2679 2.0965 4.4415 11 7 3.5424 2.6050 5.6110 12 7 3.3275 1.6295 6.5910 13 1 3.4566 1.7467 7.5452 14 6 2.9068 0.5059 5.9884 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3585 -2.4663 19 8 1.1430 0.6244 -2.7171 20 6 2.3843 -1.1844 -3.5870 21 16 1.9120 -0.4582 -5.1764 22 6 2.6974 -1.5898 -6.2752 23 1 3.2597 -2.4234 -5.8809 24 6 2.5933 -1.4100 -7.6475 25 7 3.1796 -2.2556 -8.4684 26 14 1.6213 0.0321 -8.3295 27 1 2.5213 1.2017 -8.4948 28 1 1.0444 -0.3386 -9.6467 29 1 0.5258 0.3794 -7.3892 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 3.3393 2.6097 3.4939 35 1 2.6534 -0.4242 6.4753 36 1 3.4853 -2.4127 1.2763 37 1 4.1658 -0.8702 0.6592 38 1 2.1888 -2.7704 -0.7167 39 1 3.6718 -2.0318 -1.3950 40 1 3.4710 -1.2016 -3.5037 41 1 1.9989 -2.2021 -3.5241 42 1 3.1072 -2.1297 -9.4275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572360414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:48 Heat of formation + Delta-G solvation = 6.585883 kcal Electronic energy + Delta-G solvation = -25983.153583 eV Core-core repulsion = 22091.167821 eV Total energy + Delta-G solvation = -3891.985762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86105 -40.48253 -39.19274 -37.36499 -34.48952 -32.45621 -32.42977 -31.77593 -31.23534 -30.44991 -28.61907 -25.93522 -25.61449 -23.45858 -22.95748 -22.49931 -21.20177 -20.57312 -19.39922 -18.79216 -17.69960 -17.10593 -16.66774 -16.24773 -15.78386 -15.58709 -15.13141 -15.08027 -14.88260 -14.63799 -14.30299 -14.07070 -13.81277 -13.79952 -13.40154 -13.00051 -12.93328 -12.75089 -12.59595 -12.21421 -11.91931 -11.75544 -11.68324 -11.42457 -11.26774 -11.02375 -10.97796 -10.60965 -10.42843 -10.24658 -9.85919 -9.56312 -9.46407 -9.23060 -9.00526 -8.64233 -8.50195 -6.92340 -6.28885 -4.00821 1.02510 1.65182 2.12689 2.54175 2.89045 2.94111 3.06302 3.24390 3.33213 3.50432 3.59668 4.05051 4.16353 4.28476 4.32229 4.33798 4.60240 4.70520 4.77509 4.80078 4.93782 4.98630 5.10085 5.10575 5.17062 5.25798 5.43157 5.51426 5.55154 5.70319 5.75653 5.77581 5.81460 5.86100 6.01164 6.15371 6.18604 6.40361 6.50866 6.89824 7.17026 7.54146 7.91958 7.94068 8.41278 8.41912 9.17219 10.80267 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002020 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.092895 B =13855.710417 C =14113.691032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.078 0.922 4 C 0.140 3.860 5 H 0.110 0.890 6 N -0.716 5.716 7 C 0.599 3.401 8 O -0.547 6.547 9 C -0.295 4.295 10 C 0.086 3.914 11 N -0.294 5.294 12 N -0.463 5.463 13 H 0.446 0.554 14 C 0.136 3.864 15 C -0.144 4.144 16 C 0.100 3.900 17 N -0.620 5.620 18 C 0.550 3.450 19 O -0.515 6.515 20 C -0.118 4.118 21 S -0.142 6.142 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 4.624 31.045 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.096 0.904 4 C 0.034 3.966 5 H 0.128 0.872 6 N -0.367 5.367 7 C 0.387 3.613 8 O -0.425 6.425 9 C -0.310 4.310 10 C -0.103 4.103 11 N -0.115 5.115 12 N -0.168 5.168 13 H 0.291 0.709 14 C -0.017 4.017 15 C -0.183 4.183 16 C -0.024 4.024 17 N -0.358 5.358 18 C 0.338 3.662 19 O -0.389 6.389 20 C -0.269 4.269 21 S 0.084 5.916 22 C -0.668 4.668 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.236 0.764 34 H 0.208 0.792 35 H 0.210 0.790 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.271 6.290 31.201 31.830 hybrid contribution 0.517 -0.959 -0.327 1.137 sum 0.246 5.332 30.875 31.333 Atomic orbital electron populations 1.22148 0.94031 1.02735 1.03192 1.21582 0.95195 0.96250 0.84073 0.90361 1.22041 0.97187 0.91086 0.86263 0.87164 1.45663 1.69291 1.16039 1.05709 1.17174 0.76386 0.86208 0.81508 1.90792 1.49037 1.20191 1.82460 1.20280 1.20712 0.96406 0.93626 1.24146 0.96075 0.92835 0.97255 1.77212 1.24103 1.13158 0.96998 1.46281 1.51607 1.08695 1.10264 0.70946 1.23089 0.93523 0.92136 0.92954 1.23221 0.98095 1.01664 0.95327 1.22337 0.95920 0.89073 0.95051 1.48477 1.53927 1.28849 1.04532 1.19974 0.79808 0.84996 0.81388 1.90692 1.38625 1.26963 1.82600 1.23264 1.04062 1.02525 0.97003 1.84780 1.70783 1.40408 0.95585 1.22306 1.37754 1.13968 0.92819 0.89370 1.24709 0.94556 0.96225 0.95818 1.69937 1.42217 1.35984 1.03506 0.86736 0.82253 0.82766 0.80103 1.19219 1.19951 1.15918 0.92205 0.91853 0.90486 0.76392 0.79173 0.79038 0.89182 0.90046 0.90823 0.89719 0.88560 0.88469 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.10 37.16 0.34 -1.49 16 2 C 0.13 1.43 3.21 -66.95 -0.21 1.21 16 3 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 4 C 0.14 1.22 2.84 -66.10 -0.19 1.03 16 5 H 0.11 1.08 7.26 -51.93 -0.38 0.71 16 6 N -0.72 -5.26 5.17 -53.10 -0.27 -5.54 16 7 C 0.60 5.36 7.81 -12.52 -0.10 5.26 16 8 O -0.55 -6.67 16.55 5.27 0.09 -6.58 16 9 C -0.30 -2.10 6.13 -105.07 -0.64 -2.75 16 10 C 0.09 0.54 11.50 -16.98 -0.20 0.34 16 11 N -0.29 -2.15 12.63 30.86 0.39 -1.76 16 12 N -0.46 -2.15 7.29 30.85 0.22 -1.93 16 13 H 0.45 0.56 8.96 -182.72 -1.64 -1.08 16 14 C 0.14 0.72 11.82 -16.56 -0.20 0.52 16 15 C -0.14 -1.19 6.77 -24.58 -0.17 -1.36 16 16 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16 17 N -0.62 -8.07 3.07 -163.02 -0.50 -8.57 16 18 C 0.55 9.70 7.66 -10.98 -0.08 9.61 16 19 O -0.51 -10.80 14.90 5.56 0.08 -10.71 16 20 C -0.12 -2.27 5.16 36.00 0.19 -2.09 16 21 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 22 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 23 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 24 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 25 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 26 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.08 6.88 -51.93 -0.36 0.72 16 33 H 0.40 2.08 7.33 -40.82 -0.30 1.78 16 34 H 0.19 0.65 7.50 -52.49 -0.39 0.26 16 35 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 40 H 0.10 1.73 7.85 -51.92 -0.41 1.32 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -37.64 369.27 -8.22 -45.86 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.80 Total: -1.47 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.06 Total: -0.62 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.62 Total: -43.44 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.64 -8.22 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572360414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -37.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds