Wall clock time and date at job start Tue Mar 31 2020 20:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.87505 * 2 1 4 4 C 1.54327 * 109.88443 * 238.98197 * 2 1 3 5 5 H 1.09001 * 110.72115 * 336.93579 * 4 2 1 6 6 N 1.46505 * 110.71828 * 100.02456 * 4 2 1 7 7 C 1.34773 * 120.00203 * 202.55887 * 6 4 2 8 8 O 1.21606 * 120.00091 * 0.02562 * 7 6 4 9 9 C 1.47432 * 119.99867 * 180.02562 * 7 6 4 10 10 C 1.41288 * 126.41675 * 359.97438 * 9 7 6 11 11 N 1.30448 * 108.02410 * 180.24577 * 10 9 7 12 12 N 1.39937 * 108.89593 * 359.64304 * 11 10 9 13 13 H 0.97001 * 125.75902 * 180.15439 * 12 11 10 14 14 C 1.34263 * 108.49211 * 0.36151 * 12 11 10 15 15 C 1.55152 * 103.10690 * 218.47964 * 4 2 1 16 16 C 1.55123 * 101.48373 * 35.28404 * 15 4 2 17 17 N 1.47019 * 109.88270 * 121.18033 * 2 1 3 18 18 C 1.34782 * 125.64694 * 298.38888 * 17 2 1 19 19 O 1.21281 * 119.99848 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00059 * 179.97438 * 18 17 2 21 21 S 1.81001 * 109.47233 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00267 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00133 * 359.97438 * 22 21 20 24 24 C 1.38794 * 120.00160 * 180.02562 * 22 21 20 25 25 N 1.31632 * 120.00245 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46939 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47253 * 119.99393 * 26 24 22 29 29 H 1.48496 * 109.47270 * 239.99709 * 26 24 22 30 30 H 1.09006 * 109.47122 * 181.01350 * 1 2 3 31 31 H 1.08995 * 109.46913 * 301.01123 * 1 2 3 32 32 H 1.09000 * 109.47150 * 61.01761 * 1 2 3 33 33 H 0.97001 * 119.99821 * 22.56511 * 6 4 2 34 34 H 1.08002 * 125.98501 * 359.97438 * 10 9 7 35 35 H 1.08003 * 126.29246 * 179.80880 * 14 12 11 36 36 H 1.08999 * 111.00657 * 153.48756 * 15 4 2 37 37 H 1.08998 * 111.00391 * 277.33926 * 15 4 2 38 38 H 1.09000 * 110.41487 * 204.29561 * 16 15 4 39 39 H 1.09000 * 110.29876 * 82.08967 * 16 15 4 40 40 H 1.08998 * 109.47401 * 300.00876 * 20 18 17 41 41 H 1.09001 * 109.47275 * 60.00605 * 20 18 17 42 42 H 0.96996 * 120.00109 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3040 -1.4414 -1.6222 6 7 2.4555 0.1992 -2.2873 7 6 2.5056 -0.1976 -3.5743 8 8 2.2178 -1.3416 -3.8695 9 6 2.9093 0.7554 -4.6243 10 6 3.2694 2.1085 -4.4355 11 7 3.5560 2.6165 -5.6023 12 7 3.4033 1.6252 -6.5780 13 1 3.5557 1.7379 -7.5294 14 6 3.0059 0.4928 -5.9761 15 6 3.2870 -1.5168 -0.6979 16 6 2.8145 -1.8805 0.7341 17 7 2.0300 -0.7158 1.1828 18 6 1.8074 -0.3656 2.4652 19 8 1.1429 0.6168 2.7189 20 6 2.3833 -1.1952 3.5837 21 16 1.9113 -0.4734 5.1750 22 6 2.6954 -1.6088 6.2707 23 1 3.2564 -2.4421 5.8741 24 6 2.5912 -1.4329 7.6435 25 7 1.9070 -0.4176 8.1270 26 14 3.4230 -2.6363 8.8052 27 1 4.1243 -3.6811 8.0166 28 1 4.4053 -1.9104 9.6498 29 1 2.4004 -3.2743 9.6725 30 1 -0.3634 -1.0276 0.0182 31 1 -0.3633 0.5294 0.8807 32 1 -0.3633 0.4979 -0.8990 33 1 2.6847 1.1119 -2.0518 34 1 3.2977 2.6318 -3.4911 35 1 2.7998 -0.4504 -6.4604 36 1 3.4811 -2.4127 -1.2877 37 1 4.1664 -0.8736 -0.6664 38 1 3.6716 -2.0359 1.3893 39 1 2.1891 -2.7729 0.7107 40 1 1.9971 -2.2124 3.5176 41 1 3.4700 -1.2131 3.5005 42 1 1.8346 -0.2945 9.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572360415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:49 Heat of formation + Delta-G solvation = -22.313129 kcal Electronic energy + Delta-G solvation = -25936.411359 eV Core-core repulsion = 22043.172442 eV Total energy + Delta-G solvation = -3893.238917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31600 -41.41824 -40.07476 -38.43486 -35.31105 -34.57643 -33.08401 -32.58504 -32.00291 -31.13984 -29.84729 -27.65008 -26.72259 -24.11538 -23.91502 -22.94199 -21.94932 -21.20104 -20.38641 -19.63636 -19.35146 -18.18276 -17.48284 -17.10910 -16.87531 -16.72816 -16.38361 -16.14114 -15.74019 -15.51838 -15.29360 -15.17572 -14.87887 -14.64195 -14.47004 -14.04601 -13.94136 -13.76365 -13.59008 -13.20723 -13.13973 -12.95651 -12.90158 -12.65051 -12.54705 -12.28288 -12.13931 -11.80667 -11.69043 -11.14976 -10.96320 -10.86140 -10.84932 -10.26387 -10.16570 -9.77166 -9.70312 -8.65771 -8.33982 -6.11775 0.57865 1.16814 1.23434 1.42136 1.44304 1.56527 1.59570 1.77303 1.99628 2.27832 2.40976 2.47300 3.00317 3.20183 3.37016 3.56045 3.68616 3.90013 3.92993 3.97050 4.11024 4.18852 4.22159 4.29718 4.33021 4.43155 4.48299 4.59528 4.68182 4.75024 4.79781 4.94493 5.01871 5.12604 5.23099 5.34238 5.40139 5.43245 5.52971 6.20994 6.23859 6.37378 6.46909 6.62954 7.07595 7.14094 7.29269 8.75431 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.001954 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.110603 B =14326.972412 C =14533.257036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.082 0.918 4 C 0.152 3.848 5 H 0.103 0.897 6 N -0.707 5.707 7 C 0.603 3.397 8 O -0.583 6.583 9 C -0.319 4.319 10 C 0.088 3.912 11 N -0.326 5.326 12 N -0.452 5.452 13 H 0.459 0.541 14 C 0.148 3.852 15 C -0.132 4.132 16 C 0.093 3.907 17 N -0.611 5.611 18 C 0.551 3.449 19 O -0.558 6.558 20 C -0.122 4.122 21 S -0.148 6.148 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.256 1.256 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.212 0.788 35 H 0.215 0.785 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -0.954 -31.602 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.100 0.900 4 C 0.046 3.954 5 H 0.121 0.879 6 N -0.358 5.358 7 C 0.392 3.608 8 O -0.463 6.463 9 C -0.334 4.334 10 C -0.100 4.100 11 N -0.147 5.147 12 N -0.158 5.158 13 H 0.307 0.693 14 C -0.007 4.007 15 C -0.171 4.171 16 C -0.030 4.030 17 N -0.347 5.347 18 C 0.339 3.661 19 O -0.436 6.436 20 C -0.273 4.273 21 S 0.079 5.921 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.180 1.180 28 H -0.199 1.199 29 H -0.200 1.200 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.250 0.750 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.203 0.885 -31.850 32.139 hybrid contribution 0.798 -1.684 0.915 2.076 sum 5.002 -0.799 -30.935 31.347 Atomic orbital electron populations 1.22085 0.94411 1.02512 1.02601 1.21705 0.94918 0.96595 0.83978 0.90033 1.21812 0.97267 0.90780 0.85555 0.87870 1.45562 1.69443 1.15285 1.05544 1.17363 0.75513 0.86113 0.81823 1.90771 1.51802 1.20949 1.82826 1.20266 1.22948 0.96054 0.94175 1.24504 0.95063 0.92593 0.97859 1.77171 1.25590 1.13996 0.97922 1.46308 1.51464 1.06959 1.11106 0.69289 1.23469 0.91785 0.92857 0.92604 1.23200 0.97833 1.02079 0.93952 1.22640 0.96003 0.88260 0.96060 1.48393 1.53156 1.29541 1.03610 1.19686 0.79564 0.84375 0.82487 1.90684 1.40638 1.28845 1.83421 1.23323 1.04774 1.02871 0.96308 1.85555 1.70794 1.40011 0.95730 1.23230 1.38132 1.14220 0.93682 0.89923 1.26118 0.95771 0.97941 0.99316 1.70187 1.40163 1.30359 1.14052 0.84911 0.77894 0.77748 0.77436 1.17990 1.19932 1.19992 0.92182 0.93752 0.89735 0.75044 0.77160 0.76864 0.88069 0.89375 0.89126 0.89675 0.87673 0.87450 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.09 71.98 0.65 -2.99 16 2 C 0.13 2.81 3.21 45.34 0.15 2.95 16 3 H 0.08 1.72 7.70 -2.39 -0.02 1.70 16 4 C 0.15 2.47 2.79 46.18 0.13 2.59 16 5 H 0.10 1.89 7.33 -2.39 -0.02 1.87 16 6 N -0.71 -9.43 5.18 -440.16 -2.28 -11.71 16 7 C 0.60 9.98 7.81 86.67 0.68 10.65 16 8 O -0.58 -13.51 16.58 -4.05 -0.07 -13.57 16 9 C -0.32 -4.11 6.13 -20.15 -0.12 -4.23 16 10 C 0.09 1.00 11.50 85.65 0.99 1.98 16 11 N -0.33 -4.38 12.63 -56.28 -0.71 -5.09 16 12 N -0.45 -3.48 7.29 -56.31 -0.41 -3.89 16 13 H 0.46 0.40 8.96 -213.42 -1.91 -1.51 16 14 C 0.15 1.30 11.82 84.28 1.00 2.30 16 15 C -0.13 -1.93 6.79 32.06 0.22 -1.72 16 16 C 0.09 1.71 6.69 86.93 0.58 2.29 16 17 N -0.61 -16.03 3.07 -787.63 -2.42 -18.45 16 18 C 0.55 20.50 7.66 87.66 0.67 21.17 16 19 O -0.56 -25.56 14.91 -3.03 -0.05 -25.60 16 20 C -0.12 -4.85 5.16 71.23 0.37 -4.48 16 21 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 22 C -0.54 -31.02 9.50 67.95 0.65 -30.38 16 23 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 24 C 0.01 0.75 5.49 84.86 0.47 1.22 16 25 N -0.91 -55.87 13.22 21.65 0.29 -55.59 16 26 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 27 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.04 1.34 6.90 -2.39 -0.02 1.32 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 3.70 7.29 -92.71 -0.68 3.03 16 34 H 0.21 1.14 7.50 -2.91 -0.02 1.12 16 35 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.58 7.48 -2.39 -0.02 1.57 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.11 3.86 7.85 -2.39 -0.02 3.85 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.71 372.02 0.12 -84.59 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -1.51 Total: 11.79 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.42 Total: 1.36 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -5.53 Total: -94.72 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.11 Total: -39.18 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -84.71 0.12 -84.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572360415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.276 kcal (2) G-P(sol) polarization free energy of solvation -84.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds