Wall clock time and date at job start Tue Mar 31 2020 21:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47239 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47003 * 120.00084 * 14 12 10 17 17 H 1.48500 * 109.46787 * 239.99933 * 14 12 10 18 18 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 19 19 N 1.46498 * 109.47281 * 295.00596 * 18 2 1 20 20 C 1.34775 * 120.00533 * 179.97438 * 19 18 2 21 21 O 1.21519 * 119.99591 * 359.97438 * 20 19 18 22 22 C 1.48149 * 120.00435 * 179.97438 * 20 19 18 23 23 C 1.39435 * 120.09793 * 179.97438 * 22 20 19 24 24 N 1.32082 * 119.87574 * 180.02562 * 23 22 20 25 25 C 1.32142 * 120.06683 * 359.97438 * 24 23 22 26 26 C 1.38731 * 120.19755 * 0.02562 * 25 24 23 27 27 N 1.31798 * 120.12435 * 359.71865 * 26 25 24 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 32 32 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 119.99806 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46775 * 54.99966 * 18 2 1 38 38 H 1.08998 * 109.47583 * 174.99732 * 18 2 1 39 39 H 0.97002 * 120.00105 * 359.97438 * 19 18 2 40 40 H 1.08002 * 120.06630 * 359.97438 * 23 22 20 41 41 H 1.08003 * 119.89835 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.93513 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6660 7 8 2.6250 -1.4443 -3.7792 8 6 1.5917 0.3614 -4.8936 9 16 2.1952 -0.4918 -6.3714 10 6 1.5987 0.5993 -7.6197 11 1 1.0430 1.4833 -7.3437 12 6 1.8429 0.3228 -8.9578 13 7 2.5206 -0.7544 -9.2942 14 14 1.2111 1.4800 -10.2811 15 1 0.4853 2.6091 -9.6460 16 1 2.3563 2.0061 -11.0664 17 1 0.2889 0.7441 -11.1829 18 6 2.0400 -0.7212 1.2492 19 7 1.6523 0.0353 2.4424 20 6 1.9954 -0.4135 3.6660 21 8 2.6260 -1.4461 3.7796 22 6 1.6039 0.3519 4.8725 23 6 1.9574 -0.1110 6.1394 24 7 1.6056 0.5746 7.2122 25 6 0.9204 1.6973 7.0851 26 6 0.5672 2.1605 5.8260 27 7 0.9185 1.4851 4.7501 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.5050 0.4351 -4.9354 35 1 2.0223 1.3617 -4.8498 36 1 2.6909 -0.9479 -10.2293 37 1 1.6053 -1.7197 1.2952 38 1 3.1263 -0.7995 1.2056 39 1 1.1487 0.8594 2.3518 40 1 2.5170 -1.0288 6.2435 41 1 0.6345 2.2560 7.9641 42 1 0.0068 3.0784 5.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582814995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:30 Heat of formation + Delta-G solvation = -32.170833 kcal Electronic energy + Delta-G solvation = -24690.378245 eV Core-core repulsion = 20796.711866 eV Total energy + Delta-G solvation = -3893.666379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86241 -39.95898 -39.24360 -37.15599 -35.22481 -34.48314 -32.62504 -32.43552 -32.07383 -29.39388 -27.53436 -26.33923 -25.54728 -25.31554 -24.62838 -21.47037 -20.97276 -20.40130 -18.76272 -18.22234 -17.81697 -17.40918 -16.63251 -16.29947 -16.23653 -15.82697 -15.62513 -15.35693 -15.05189 -14.81327 -14.49749 -14.38939 -13.87727 -13.73572 -13.47981 -13.15939 -13.04246 -12.93475 -12.57157 -12.39285 -12.00289 -11.93285 -11.61191 -11.40980 -11.26894 -11.07815 -11.02780 -10.90011 -10.76270 -10.15096 -9.82527 -9.80416 -9.55241 -9.43082 -9.08710 -8.91482 -8.23914 -6.50819 -6.22600 -3.93159 -0.27195 0.35211 2.16075 2.42526 3.03011 3.08488 3.14173 3.20848 3.26626 3.29572 3.33617 3.52766 3.69597 3.76240 4.14444 4.19436 4.37250 4.41811 4.46818 4.49842 4.56600 4.84629 5.01020 5.12586 5.12739 5.24854 5.31095 5.43860 5.51492 5.57370 5.60757 5.66193 5.83690 5.86937 5.88085 5.95492 6.12289 6.39669 6.57153 6.83509 7.05054 7.58940 7.59753 7.67103 8.34504 8.59382 9.22875 10.84894 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.001490 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.809476 B =18791.105797 C =19413.640027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.124 3.876 19 N -0.705 5.705 20 C 0.574 3.426 21 O -0.524 6.524 22 C 0.029 3.971 23 C 0.111 3.889 24 N -0.439 5.439 25 C 0.073 3.927 26 C 0.051 3.949 27 N -0.413 5.413 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 8.225 32.868 34.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.104 0.896 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.000 4.000 19 N -0.357 5.357 20 C 0.357 3.643 21 O -0.399 6.399 22 C -0.112 4.112 23 C -0.049 4.049 24 N -0.153 5.153 25 C -0.087 4.087 26 C -0.112 4.112 27 N -0.131 5.131 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.248 0.752 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.774 5.584 32.561 33.380 hybrid contribution -1.709 2.892 -0.666 3.425 sum -6.483 8.476 31.895 33.633 Atomic orbital electron populations 1.21904 0.93909 1.02932 1.02120 1.21596 0.97231 1.00822 0.93761 0.89574 1.21160 1.00326 0.95415 0.82700 1.45965 1.59753 1.28126 1.05458 1.20310 0.78705 0.85478 0.83766 1.90713 1.38361 1.23763 1.86177 1.23527 1.04773 1.03470 0.98620 1.85421 1.72542 1.33272 0.92153 1.22910 1.41212 1.11495 0.92770 0.90877 1.24995 0.94858 0.95784 0.97946 1.70030 1.37426 1.24700 1.18094 0.86114 0.78587 0.80112 0.80661 1.19636 1.20562 1.20567 1.21424 1.00906 0.95472 0.82212 1.45805 1.56720 1.28012 1.05158 1.17608 0.79812 0.84356 0.82508 1.90848 1.39587 1.23286 1.86176 1.22201 0.99140 0.94215 0.95668 1.23900 0.94330 0.99375 0.87249 1.68671 1.08744 1.05869 1.32053 1.24182 0.92625 0.92692 0.99250 1.23892 0.98134 1.00360 0.88775 1.68332 1.06725 1.04394 1.33663 0.92438 0.91768 0.91874 0.91093 0.91179 0.76825 0.89224 0.89245 0.92224 0.90334 0.90365 0.75234 0.79875 0.80506 0.80346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.94 37.15 0.33 -0.62 16 2 C -0.11 -0.78 2.46 -90.62 -0.22 -1.00 16 3 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 4 C 0.13 1.34 5.07 -4.04 -0.02 1.32 16 5 N -0.74 -9.05 5.28 -60.30 -0.32 -9.37 16 6 C 0.53 9.62 7.85 -10.98 -0.09 9.53 16 7 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 8 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 14 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.12 0.93 5.06 -4.04 -0.02 0.91 16 19 N -0.71 -5.11 5.27 -61.15 -0.32 -5.43 16 20 C 0.57 5.25 7.81 -12.19 -0.10 5.15 16 21 O -0.52 -6.31 16.35 5.35 0.09 -6.23 16 22 C 0.03 0.22 6.75 -82.84 -0.56 -0.34 16 23 C 0.11 0.82 10.77 -17.00 -0.18 0.64 16 24 N -0.44 -3.02 10.49 -12.71 -0.13 -3.15 16 25 C 0.07 0.29 11.23 -17.24 -0.19 0.09 16 26 C 0.05 0.19 11.22 -17.38 -0.20 0.00 16 27 N -0.41 -2.63 9.71 -9.62 -0.09 -2.72 16 28 H 0.06 0.30 7.18 -51.93 -0.37 -0.08 16 29 H 0.06 0.41 7.18 -51.93 -0.37 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.40 3.68 7.66 -40.82 -0.31 3.37 16 34 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.41 2.37 7.01 -40.82 -0.29 2.08 16 40 H 0.18 1.22 7.65 -52.49 -0.40 0.82 16 41 H 0.18 0.06 8.06 -52.48 -0.42 -0.36 16 42 H 0.18 0.04 8.06 -52.49 -0.42 -0.38 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -37.59 380.00 -7.81 -45.40 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.52 Total: 0.21 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.82 Total: -0.01 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.13 Total: -46.02 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.18 Total: -17.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.59 -7.81 -45.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582814995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.231 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds