Wall clock time and date at job start Tue Mar 31 2020 21:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47239 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47003 * 120.00084 * 14 12 10 17 17 H 1.48500 * 109.46787 * 239.99933 * 14 12 10 18 18 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 19 19 N 1.46498 * 109.47281 * 295.00596 * 18 2 1 20 20 C 1.34775 * 120.00533 * 179.97438 * 19 18 2 21 21 O 1.21519 * 119.99591 * 359.97438 * 20 19 18 22 22 C 1.48149 * 120.00435 * 179.97438 * 20 19 18 23 23 C 1.39435 * 120.09793 * 179.97438 * 22 20 19 24 24 N 1.32082 * 119.87574 * 180.02562 * 23 22 20 25 25 C 1.32142 * 120.06683 * 359.97438 * 24 23 22 26 26 C 1.38731 * 120.19755 * 0.02562 * 25 24 23 27 27 N 1.31798 * 120.12435 * 359.71865 * 26 25 24 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 32 32 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 119.99806 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46775 * 54.99966 * 18 2 1 38 38 H 1.08998 * 109.47583 * 174.99732 * 18 2 1 39 39 H 0.97002 * 120.00105 * 359.97438 * 19 18 2 40 40 H 1.08002 * 120.06630 * 359.97438 * 23 22 20 41 41 H 1.08003 * 119.89835 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.93513 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6660 7 8 2.6250 -1.4443 -3.7792 8 6 1.5917 0.3614 -4.8936 9 16 2.1952 -0.4918 -6.3714 10 6 1.5987 0.5993 -7.6197 11 1 1.0430 1.4833 -7.3437 12 6 1.8429 0.3228 -8.9578 13 7 2.5206 -0.7544 -9.2942 14 14 1.2111 1.4800 -10.2811 15 1 0.4853 2.6091 -9.6460 16 1 2.3563 2.0061 -11.0664 17 1 0.2889 0.7441 -11.1829 18 6 2.0400 -0.7212 1.2492 19 7 1.6523 0.0353 2.4424 20 6 1.9954 -0.4135 3.6660 21 8 2.6260 -1.4461 3.7796 22 6 1.6039 0.3519 4.8725 23 6 1.9574 -0.1110 6.1394 24 7 1.6056 0.5746 7.2122 25 6 0.9204 1.6973 7.0851 26 6 0.5672 2.1605 5.8260 27 7 0.9185 1.4851 4.7501 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.5050 0.4351 -4.9354 35 1 2.0223 1.3617 -4.8498 36 1 2.6909 -0.9479 -10.2293 37 1 1.6053 -1.7197 1.2952 38 1 3.1263 -0.7995 1.2056 39 1 1.1487 0.8594 2.3518 40 1 2.5170 -1.0288 6.2435 41 1 0.6345 2.2560 7.9641 42 1 0.0068 3.0784 5.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582814995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:29 Heat of formation + Delta-G solvation = -62.324997 kcal Electronic energy + Delta-G solvation = -24691.685827 eV Core-core repulsion = 20796.711866 eV Total energy + Delta-G solvation = -3894.973962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31064 -40.80130 -40.39857 -38.03288 -35.84611 -35.29824 -34.57519 -33.43306 -32.65243 -30.81386 -28.10862 -27.73210 -27.00765 -25.89481 -25.21788 -22.14154 -21.77962 -21.61104 -19.87416 -19.26011 -18.68004 -17.85414 -17.66739 -17.52532 -16.94404 -16.87350 -16.64657 -16.62326 -16.10281 -15.86320 -15.63801 -15.22298 -14.99518 -14.79209 -14.39210 -14.30526 -13.93862 -13.87257 -13.67891 -13.32436 -13.14848 -12.90656 -12.82992 -12.60122 -12.43503 -12.22898 -12.18024 -11.89316 -11.70428 -11.59425 -11.15104 -10.96584 -10.59720 -10.25562 -10.24401 -10.19646 -10.10209 -8.65692 -8.33949 -6.11916 -0.71381 -0.04386 1.27857 1.42271 1.47887 1.56975 1.58531 1.63301 1.82466 2.27511 2.34962 2.68747 2.87723 3.00506 3.17168 3.33286 3.36034 3.64407 3.75993 3.79900 3.83874 4.04606 4.08016 4.30826 4.32065 4.38541 4.49623 4.51621 4.53220 4.71115 4.76938 4.87089 4.95271 5.12049 5.22048 5.26474 5.36203 5.43120 5.45362 5.99262 6.20966 6.29878 6.52110 6.60333 6.97484 7.07638 7.26673 8.75540 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.001490 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.809476 B =18791.105797 C =19413.640027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 H 0.106 0.894 4 C 0.127 3.873 5 N -0.708 5.708 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.129 4.129 9 S -0.155 6.155 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.126 3.874 19 N -0.693 5.693 20 C 0.571 3.429 21 O -0.563 6.563 22 C 0.010 3.990 23 C 0.098 3.902 24 N -0.464 5.464 25 C 0.084 3.916 26 C 0.059 3.941 27 N -0.423 5.423 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.421 0.579 40 H 0.177 0.823 41 H 0.217 0.783 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 11.905 34.342 37.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 H 0.124 0.876 4 C 0.002 3.998 5 N -0.363 5.363 6 C 0.318 3.682 7 O -0.446 6.446 8 C -0.280 4.280 9 S 0.072 5.928 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.200 1.200 18 C 0.001 3.999 19 N -0.344 5.344 20 C 0.356 3.644 21 O -0.442 6.442 22 C -0.129 4.129 23 C -0.060 4.060 24 N -0.178 5.178 25 C -0.078 4.078 26 C -0.104 4.104 27 N -0.141 5.141 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.259 0.741 40 H 0.194 0.806 41 H 0.234 0.766 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.015 9.300 34.063 36.000 hybrid contribution -1.086 1.844 -0.899 2.321 sum -8.101 11.145 33.165 35.913 Atomic orbital electron populations 1.21915 0.92950 1.02719 1.03212 1.21419 0.97748 1.01039 0.91223 0.87556 1.21272 0.99962 0.95354 0.83194 1.45653 1.58117 1.28405 1.04100 1.20075 0.78466 0.84701 0.84924 1.90704 1.40985 1.25948 1.86950 1.23368 1.05782 1.03377 0.95474 1.85626 1.74061 1.36227 0.96915 1.23249 1.41169 1.11628 0.93251 0.89776 1.26133 0.94839 0.97520 1.00684 1.70197 1.38980 1.26934 1.18756 0.84897 0.78057 0.77899 0.77037 1.17898 1.20019 1.20018 1.21333 1.00422 0.95378 0.82721 1.45683 1.56176 1.28053 1.04507 1.17896 0.79187 0.83986 0.83359 1.90819 1.41503 1.25076 1.86799 1.21890 1.00903 0.95238 0.94827 1.23830 0.94920 0.99660 0.87618 1.68695 1.09957 1.07275 1.31892 1.24913 0.90492 0.91454 1.00951 1.24627 0.96973 1.00876 0.87946 1.68331 1.06828 1.04003 1.34951 0.90778 0.91214 0.92827 0.92128 0.92066 0.74491 0.87044 0.87067 0.92035 0.91193 0.91214 0.74095 0.80618 0.76645 0.76275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.94 71.98 0.64 -0.86 16 2 C -0.10 -1.11 2.46 -10.80 -0.03 -1.14 16 3 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 4 C 0.13 2.52 5.07 86.38 0.44 2.95 16 5 N -0.71 -16.03 5.28 -463.06 -2.45 -18.48 16 6 C 0.53 18.94 7.85 87.65 0.69 19.63 16 7 O -0.57 -26.08 15.86 -3.04 -0.05 -26.12 16 8 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 9 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.55 -30.86 9.50 67.95 0.65 -30.21 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.73 5.49 84.86 0.47 1.19 16 13 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 14 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.13 1.82 5.06 86.38 0.44 2.26 16 19 N -0.69 -9.44 5.27 -465.69 -2.46 -11.90 16 20 C 0.57 10.64 7.81 86.88 0.68 11.31 16 21 O -0.56 -14.43 16.35 -3.78 -0.06 -14.49 16 22 C 0.01 0.16 6.75 41.89 0.28 0.44 16 23 C 0.10 1.48 10.77 84.94 0.92 2.39 16 24 N -0.46 -5.88 10.49 -194.12 -2.04 -7.92 16 25 C 0.08 0.41 11.23 84.76 0.95 1.36 16 26 C 0.06 0.24 11.22 84.82 0.95 1.20 16 27 N -0.42 -4.52 9.71 -184.34 -1.79 -6.31 16 28 H 0.07 0.53 7.18 -2.39 -0.02 0.52 16 29 H 0.07 0.65 7.18 -2.38 -0.02 0.63 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.42 6.30 7.66 -92.70 -0.71 5.59 16 34 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 35 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.42 4.01 7.01 -92.71 -0.65 3.36 16 40 H 0.18 2.67 7.65 -2.91 -0.02 2.65 16 41 H 0.22 -0.81 8.06 -2.91 -0.02 -0.83 16 42 H 0.22 -1.03 8.06 -2.91 -0.02 -1.05 16 Total: -1.00 -86.25 380.00 -0.47 -86.71 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.29 Total: 12.64 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 7.51 Total: 6.03 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -8.44 Total: -100.32 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.11 Total: -40.61 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -86.25 -0.47 -86.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582814995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.389 kcal (2) G-P(sol) polarization free energy of solvation -86.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds