Wall clock time and date at job start Tue Mar 31 2020 20:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.29040 * 2 1 4 4 C 1.54011 * 110.32657 * 237.87314 * 2 1 3 5 5 N 1.47481 * 107.08109 * 242.41290 * 4 2 1 6 6 C 1.34777 * 127.03178 * 154.51837 * 5 4 2 7 7 O 1.21593 * 119.99923 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00128 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.50701 * 109.47114 * 154.72036 * 9 8 6 12 12 H 1.07995 * 120.00006 * 0.02562 * 11 9 8 13 13 C 1.37875 * 120.00190 * 179.97438 * 11 9 8 14 14 N 1.31520 * 119.99966 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00189 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47195 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47151 * 120.00429 * 15 13 11 18 18 H 1.48503 * 109.46944 * 240.00418 * 15 13 11 19 19 C 1.52997 * 109.47036 * 274.72131 * 9 8 6 20 20 F 1.39901 * 109.47352 * 60.00121 * 19 9 8 21 21 F 1.39894 * 109.47202 * 180.02562 * 19 9 8 22 22 F 1.39903 * 109.47248 * 300.00283 * 19 9 8 23 23 C 1.48121 * 105.93375 * 334.77390 * 5 4 2 24 24 C 1.54602 * 103.41734 * 39.02839 * 23 5 4 25 25 H 1.08997 * 110.57342 * 81.17328 * 24 23 5 26 26 C 1.53003 * 110.82903 * 204.44556 * 24 23 5 27 27 C 1.50700 * 109.46949 * 288.56306 * 26 24 23 28 28 O 1.20826 * 120.00574 * 359.97438 * 27 26 24 29 29 O 1.34230 * 119.99995 * 180.02562 * 27 26 24 30 30 H 1.09003 * 109.47076 * 180.67592 * 1 2 3 31 31 H 1.08999 * 109.47156 * 300.67390 * 1 2 3 32 32 H 1.08998 * 109.47341 * 60.67683 * 1 2 3 33 33 H 1.08998 * 109.91172 * 123.04976 * 4 2 1 34 34 H 1.08999 * 109.90953 * 1.76853 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 36 36 H 0.96995 * 120.00431 * 179.97438 * 14 13 11 37 37 H 1.09003 * 110.65961 * 157.50711 * 23 5 4 38 38 H 1.09001 * 110.66115 * 280.62878 * 23 5 4 39 39 H 1.08998 * 109.47142 * 48.56053 * 26 24 23 40 40 H 1.08994 * 109.47000 * 168.56736 * 26 24 23 41 41 H 0.96701 * 117.00567 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0649 -0.7680 -1.2231 5 7 2.8276 -1.9216 -0.7105 6 6 3.0613 -3.0871 -1.3458 7 8 3.7107 -3.9578 -0.7993 8 7 2.5751 -3.2875 -2.5867 9 6 2.8240 -4.5567 -3.2748 10 1 2.8284 -5.3692 -2.5481 11 6 1.7382 -4.7982 -4.2916 12 1 0.9427 -4.0780 -4.4135 13 6 1.7611 -5.9379 -5.0671 14 7 2.7302 -6.8147 -4.9190 15 14 0.4157 -6.2369 -6.3280 16 1 -0.5501 -5.1094 -6.2981 17 1 1.0190 -6.3369 -7.6813 18 1 -0.2916 -7.5024 -6.0066 19 6 4.1799 -4.4967 -3.9809 20 9 5.1878 -4.2726 -3.0369 21 9 4.4173 -5.7085 -4.6384 22 9 4.1743 -3.4539 -4.9135 23 6 3.2789 -1.5397 0.6476 24 6 2.0671 -0.7736 1.2261 25 1 1.3175 -1.4701 1.6018 26 6 2.5095 0.1938 2.3258 27 6 2.9116 -0.5875 3.5501 28 8 2.8502 -1.7942 3.5441 29 8 3.3371 0.0572 4.6479 30 1 -0.3633 -1.0276 0.0121 31 1 -0.3633 0.5243 0.8839 32 1 -0.3634 0.5033 -0.8960 33 1 2.7180 -0.1224 -1.8103 34 1 1.2333 -1.1156 -1.8360 35 1 2.0567 -2.5930 -3.0225 36 1 2.7461 -7.6167 -5.4643 37 1 3.4935 -2.4259 1.2449 38 1 4.1523 -0.8898 0.5940 39 1 3.3584 0.7801 1.9740 40 1 1.6851 0.8616 2.5755 41 1 3.5837 -0.4866 5.4086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599855782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:24 Heat of formation + Delta-G solvation = -283.836127 kcal Electronic energy + Delta-G solvation = -31024.726569 eV Core-core repulsion = 26103.244801 eV Total energy + Delta-G solvation = -4921.481768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.42921 -48.06220 -47.73979 -41.62212 -40.93121 -39.12841 -37.02753 -36.50221 -34.70486 -34.04731 -32.49119 -30.44866 -28.10848 -27.22462 -26.58027 -24.50432 -23.19955 -22.11461 -21.20657 -20.82409 -19.72632 -18.92971 -18.87203 -18.71967 -18.58837 -17.89257 -17.40245 -17.05874 -16.83098 -16.62646 -16.40586 -15.47996 -15.16702 -15.05313 -14.97462 -14.60230 -14.49382 -14.46284 -14.31741 -14.19974 -14.02171 -13.97925 -13.87266 -13.62564 -13.18635 -13.00290 -12.81984 -12.74899 -12.65195 -12.60397 -12.43176 -12.21763 -11.91749 -11.75101 -11.57386 -11.56014 -11.37507 -11.21856 -10.70790 -10.21363 -9.52783 -8.21758 -6.53408 1.31162 1.45267 1.46750 1.55446 1.62763 2.08397 2.21571 2.36205 2.53533 2.93338 3.04876 3.49712 3.58598 3.75494 3.78612 3.86761 4.11221 4.16644 4.24225 4.32415 4.56856 4.60330 4.66810 4.70773 4.75954 4.82809 4.91315 4.95620 5.12877 5.17153 5.17506 5.40447 5.41112 5.52320 5.59857 5.64004 5.72471 6.13099 6.52051 7.04838 7.06551 7.17101 7.59958 8.71582 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.003181 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.519330 B = 8799.275927 C = 9449.026648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.131 0.869 4 C 0.091 3.909 5 N -0.641 5.641 6 C 0.712 3.288 7 O -0.634 6.634 8 N -0.716 5.716 9 C 0.270 3.730 10 H 0.041 0.959 11 C -0.560 4.560 12 H 0.093 0.907 13 C 0.013 3.987 14 N -0.876 5.876 15 Si 0.987 3.013 16 H -0.253 1.253 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.414 3.586 20 F -0.220 7.220 21 F -0.150 7.150 22 F -0.202 7.202 23 C 0.122 3.878 24 C -0.082 4.082 25 H 0.071 0.929 26 C -0.094 4.094 27 C 0.473 3.527 28 O -0.559 6.559 29 O -0.514 6.514 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.269 0.731 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 20.957 11.617 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.148 0.852 4 C -0.031 4.031 5 N -0.379 5.379 6 C 0.414 3.586 7 O -0.515 6.515 8 N -0.370 5.370 9 C 0.162 3.838 10 H 0.059 0.941 11 C -0.597 4.597 12 H 0.111 0.889 13 C -0.192 4.192 14 N -0.510 5.510 15 Si 0.810 3.190 16 H -0.176 1.176 17 H -0.205 1.205 18 H -0.204 1.204 19 C 0.357 3.643 20 F -0.202 7.202 21 F -0.131 7.131 22 F -0.184 7.184 23 C -0.001 4.001 24 C -0.101 4.101 25 H 0.090 0.910 26 C -0.131 4.131 27 C 0.318 3.682 28 O -0.449 6.449 29 O -0.328 6.328 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.451 19.972 11.543 23.493 hybrid contribution 0.224 -1.244 -0.349 1.311 sum -4.227 18.728 11.194 22.224 Atomic orbital electron populations 1.21880 0.93049 1.01498 1.03690 1.22135 0.97089 1.00307 0.90503 0.85155 1.22563 0.95746 0.86625 0.98143 1.47819 1.57505 1.14010 1.18591 1.15756 0.79683 0.81803 0.81389 1.90882 1.47197 1.45186 1.68225 1.44959 1.57827 1.19126 1.15095 1.19194 0.88900 0.83491 0.92220 0.94085 1.21232 1.09604 1.08085 1.20746 0.88921 1.26055 0.98477 0.95248 0.99412 1.70555 1.30630 1.10122 1.39678 0.85055 0.77999 0.78670 0.77239 1.17649 1.20519 1.20362 1.23310 0.89529 0.73715 0.77739 1.93062 1.66093 1.94866 1.66206 1.93372 1.94997 1.43252 1.81491 1.92978 1.97098 1.59996 1.68289 1.22464 0.97706 0.98933 0.81028 1.22094 0.96524 0.96677 0.94832 0.91015 1.21472 1.06590 0.97660 0.87402 1.24123 0.72174 0.86646 0.85270 1.90808 1.51967 1.18318 1.83855 1.84488 1.77193 1.45813 1.25268 0.94644 0.90187 0.90787 0.89748 0.90766 0.75540 0.92126 0.93310 0.89795 0.84356 0.83378 0.71465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.89 71.98 0.64 -0.98 16 2 C -0.08 -1.01 3.17 -9.91 -0.03 -1.04 16 3 H 0.13 0.64 7.85 -2.38 -0.02 0.62 16 4 C 0.09 1.87 6.32 86.53 0.55 2.42 16 5 N -0.64 -20.82 3.29 -828.00 -2.73 -23.55 16 6 C 0.71 31.90 8.08 179.05 1.45 33.35 16 7 O -0.63 -34.95 15.13 -4.01 -0.06 -35.01 16 8 N -0.72 -31.61 4.95 -461.41 -2.29 -33.90 16 9 C 0.27 14.36 2.21 44.24 0.10 14.46 16 10 H 0.04 2.55 7.57 -2.39 -0.02 2.53 16 11 C -0.56 -29.16 8.47 25.60 0.22 -28.94 16 12 H 0.09 4.42 7.74 -2.91 -0.02 4.40 16 13 C 0.01 0.70 5.20 84.65 0.44 1.14 16 14 N -0.88 -49.87 9.50 21.45 0.20 -49.67 16 15 Si 0.99 41.08 29.54 68.60 2.03 43.11 16 16 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 19 C 0.41 22.55 2.81 71.98 0.20 22.75 16 20 F -0.22 -12.19 15.69 44.97 0.71 -11.48 16 21 F -0.15 -8.78 12.91 44.97 0.58 -8.20 16 22 F -0.20 -10.22 16.94 44.97 0.76 -9.46 16 23 C 0.12 3.34 5.97 86.61 0.52 3.86 16 24 C -0.08 -1.42 2.15 -9.70 -0.02 -1.44 16 25 H 0.07 1.63 7.60 -2.39 -0.02 1.62 16 26 C -0.09 -0.90 5.19 29.85 0.16 -0.75 16 27 C 0.47 7.91 8.16 71.24 0.58 8.49 16 28 O -0.56 -15.38 15.61 21.96 0.34 -15.04 16 29 O -0.51 -5.79 13.42 -51.41 -0.69 -6.48 16 30 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.54 6.84 -2.39 -0.02 1.52 16 35 H 0.41 15.16 7.11 -92.71 -0.66 14.50 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.05 1.78 7.12 -2.39 -0.02 1.76 16 38 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 39 H 0.14 0.65 7.99 -2.39 -0.02 0.63 16 40 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.42 2.13 9.10 -74.06 -0.67 1.46 16 Total: -1.00 -82.18 350.82 3.42 -78.76 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.23 Total: 17.62 kcal Atomic # 6 Polarization: 48.52 SS G_CDS: 4.79 Total: 53.31 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.81 Total: -107.11 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -0.41 Total: -56.53 kcal Atomic # 9 Polarization: -31.20 SS G_CDS: 2.05 Total: -29.15 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -82.18 3.42 -78.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599855782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.077 kcal (2) G-P(sol) polarization free energy of solvation -82.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds