Wall clock time and date at job start Tue Mar 31 2020 20:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58362 * 2 1 4 4 C 1.53192 * 109.58708 * 239.71622 * 2 1 3 5 5 C 1.53045 * 109.31054 * 294.84750 * 4 2 1 6 6 C 1.53039 * 109.53546 * 298.63416 * 5 4 2 7 7 H 1.09003 * 109.50238 * 301.38545 * 6 5 4 8 8 C 1.50701 * 109.49838 * 181.31793 * 6 5 4 9 9 O 1.20830 * 119.99895 * 359.97438 * 8 6 5 10 10 O 1.34230 * 120.00427 * 180.02562 * 8 6 5 11 11 C 1.53193 * 109.31528 * 61.36802 * 6 5 4 12 12 N 1.46924 * 109.58569 * 120.27751 * 2 1 3 13 13 C 1.34772 * 120.63396 * 246.17869 * 12 2 1 14 14 O 1.21592 * 120.00156 * 174.95957 * 13 12 2 15 15 N 1.34780 * 119.99883 * 354.95753 * 13 12 2 16 16 C 1.46495 * 119.99917 * 184.97726 * 15 13 12 17 17 H 1.09001 * 109.47654 * 34.99931 * 16 15 13 18 18 C 1.50703 * 109.47110 * 155.00527 * 16 15 13 19 19 H 1.07992 * 119.99918 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99948 * 180.02562 * 18 16 15 21 21 N 1.31513 * 119.99958 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99837 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47184 * 59.99257 * 22 20 18 24 24 H 1.48494 * 109.46965 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46617 * 299.99179 * 22 20 18 26 26 C 1.53008 * 109.47152 * 275.00177 * 16 15 13 27 27 F 1.39900 * 109.47219 * 59.99974 * 26 16 15 28 28 F 1.39900 * 109.47001 * 180.02562 * 26 16 15 29 29 F 1.39905 * 109.46690 * 299.99965 * 26 16 15 30 30 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47461 * 60.00134 * 1 2 3 32 32 H 1.09001 * 109.47274 * 300.00546 * 1 2 3 33 33 H 1.08999 * 109.49484 * 54.79694 * 4 2 1 34 34 H 1.09000 * 109.49705 * 174.90034 * 4 2 1 35 35 H 1.09002 * 109.46244 * 58.65518 * 5 4 2 36 36 H 1.08997 * 109.45643 * 178.63234 * 5 4 2 37 37 H 0.96698 * 117.00255 * 180.02562 * 10 8 6 38 38 H 1.09004 * 109.58432 * 65.14803 * 11 6 5 39 39 H 1.08995 * 109.58991 * 185.43492 * 11 6 5 40 40 H 0.96997 * 119.99893 * 4.97973 * 15 13 12 41 41 H 0.97003 * 119.99550 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 1.6414 -2.2027 -1.1728 6 6 2.2801 -2.8464 0.0600 7 1 3.3641 -2.7478 0.0017 8 6 1.9099 -4.3063 0.1139 9 8 1.2069 -4.7834 -0.7453 10 8 2.3603 -5.0764 1.1168 11 6 1.7692 -2.1426 1.3211 12 7 2.0225 -0.6979 1.1954 13 6 2.6940 -0.0288 2.1534 14 8 3.0163 -0.5965 3.1793 15 7 3.0082 1.2695 1.9744 16 6 3.8314 1.9673 2.9652 17 1 4.5686 1.2774 3.3759 18 6 4.5381 3.1238 2.3063 19 1 4.3893 3.3192 1.2547 20 6 5.3755 3.9318 3.0459 21 7 5.5571 3.6935 4.3264 22 14 6.2520 5.3649 2.2290 23 1 5.2481 6.3052 1.6695 24 1 7.0863 6.0723 3.2333 25 1 7.1181 4.8567 1.1349 26 6 2.9389 2.4904 4.0925 27 9 2.2827 1.4168 4.7042 28 9 3.7249 3.1572 5.0383 29 9 1.9928 3.3760 3.5653 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.6075 -0.2758 -2.1371 34 1 3.1297 -0.6488 -1.2921 35 1 0.5565 -2.2802 -1.1021 36 1 1.9846 -2.7177 -2.0700 37 1 2.0967 -6.0067 1.1084 38 1 0.6987 -2.3173 1.4288 39 1 2.2927 -2.5319 2.1943 40 1 2.6893 1.7419 1.1896 41 1 6.1460 4.2622 4.8468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603380975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:34 Heat of formation + Delta-G solvation = -276.244851 kcal Electronic energy + Delta-G solvation = -31708.562481 eV Core-core repulsion = 26787.409896 eV Total energy + Delta-G solvation = -4921.152585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.36791 -48.00005 -47.68587 -41.94504 -41.01453 -38.82759 -37.14663 -36.54023 -34.73789 -33.80230 -33.26922 -30.29706 -28.88211 -26.58880 -25.82856 -25.10926 -23.41659 -22.79950 -21.52405 -20.48739 -19.40107 -19.06071 -18.86428 -18.66756 -18.57620 -17.69909 -17.48007 -17.04780 -16.81632 -16.51354 -16.17043 -15.59841 -15.30818 -15.13132 -14.90639 -14.70169 -14.48208 -14.41597 -14.40645 -14.24329 -14.06618 -13.98693 -13.87397 -13.79690 -13.15639 -13.02066 -12.96192 -12.72871 -12.58639 -12.56969 -12.35353 -12.20495 -11.89608 -11.82369 -11.60295 -11.58549 -11.46690 -11.09103 -10.64774 -10.16590 -9.54272 -8.18007 -6.49068 1.06640 1.48444 1.51804 1.56938 1.62231 2.07298 2.16622 2.39106 2.58632 2.94167 2.98269 3.55005 3.70285 3.77369 3.82430 3.90822 3.95169 4.09607 4.20142 4.27981 4.40548 4.51657 4.60430 4.65601 4.73398 4.90103 4.95033 5.02151 5.05026 5.10082 5.19641 5.45209 5.47161 5.50912 5.58441 5.61543 5.67858 6.00005 6.55607 6.97128 7.04345 7.21339 7.61765 8.74531 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.003564 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.054261 B = 7853.546365 C = 8230.921258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.090 0.910 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.092 4.092 7 H 0.114 0.886 8 C 0.498 3.502 9 O -0.537 6.537 10 O -0.513 6.513 11 C 0.144 3.856 12 N -0.618 5.618 13 C 0.700 3.300 14 O -0.624 6.624 15 N -0.718 5.718 16 C 0.272 3.728 17 H 0.045 0.955 18 C -0.560 4.560 19 H 0.093 0.907 20 C 0.016 3.984 21 N -0.875 5.875 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.261 1.261 26 C 0.411 3.589 27 F -0.218 7.218 28 F -0.152 7.152 29 F -0.204 7.204 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.429 0.571 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.407 0.593 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 -9.433 -13.020 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.108 0.892 4 C -0.157 4.157 5 C -0.135 4.135 6 C -0.113 4.113 7 H 0.132 0.868 8 C 0.340 3.660 9 O -0.426 6.426 10 O -0.327 6.327 11 C 0.020 3.980 12 N -0.356 5.356 13 C 0.401 3.599 14 O -0.504 6.504 15 N -0.374 5.374 16 C 0.164 3.836 17 H 0.063 0.937 18 C -0.596 4.596 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.509 5.509 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.186 1.186 26 C 0.355 3.645 27 F -0.200 7.200 28 F -0.133 7.133 29 F -0.186 7.186 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.291 0.709 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.246 0.754 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.512 -9.497 -12.294 17.256 hybrid contribution 0.038 0.259 0.346 0.434 sum -7.474 -9.238 -11.948 16.851 Atomic orbital electron populations 1.22164 0.93473 1.03070 1.03048 1.21568 0.95640 0.96478 0.84238 0.89231 1.21927 1.01998 0.94394 0.97400 1.21456 1.01551 0.95225 0.95306 1.21462 1.04265 0.86839 0.98695 0.86773 1.23226 0.75403 0.89639 0.77712 1.90708 1.36587 1.75601 1.39749 1.84571 1.71112 1.28557 1.48458 1.21248 1.01157 0.78745 0.96832 1.47338 1.58582 1.08568 1.21093 1.16119 0.78618 0.81928 0.83218 1.90894 1.61318 1.69081 1.29121 1.45180 1.55986 1.09430 1.26853 1.19186 0.86447 0.93510 0.84467 0.93710 1.21161 1.28282 1.12539 0.97660 0.88926 1.25988 0.96929 1.00831 0.95192 1.70537 1.33769 1.39253 1.07307 0.85217 0.78281 0.77828 0.78036 1.19020 1.21207 1.18586 1.23391 0.79690 0.75202 0.86240 1.93071 1.83643 1.57520 1.85780 1.93371 1.71869 1.80662 1.67396 1.92978 1.67823 1.70901 1.86915 0.91487 0.88606 0.93846 0.86986 0.91239 0.90097 0.89844 0.70925 0.90276 0.89954 0.75376 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.02 71.98 0.65 -2.06 16 2 C 0.12 2.50 3.20 44.98 0.14 2.64 16 3 H 0.09 1.87 5.56 -2.38 -0.01 1.85 16 4 C -0.12 -1.77 5.56 30.67 0.17 -1.60 16 5 C -0.10 -1.54 4.25 30.62 0.13 -1.41 16 6 C -0.09 -1.80 2.78 -11.46 -0.03 -1.84 16 7 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 8 C 0.50 9.83 7.63 71.24 0.54 10.37 16 9 O -0.54 -12.67 16.74 21.95 0.37 -12.30 16 10 O -0.51 -8.58 13.35 -51.41 -0.69 -9.27 16 11 C 0.14 3.58 5.22 86.31 0.45 4.03 16 12 N -0.62 -17.59 2.69 -812.16 -2.19 -19.77 16 13 C 0.70 27.88 7.91 179.05 1.42 29.29 16 14 O -0.62 -30.53 14.16 -4.01 -0.06 -30.59 16 15 N -0.72 -29.08 4.90 -461.40 -2.26 -31.34 16 16 C 0.27 13.61 2.20 44.25 0.10 13.71 16 17 H 0.05 2.60 7.65 -2.39 -0.02 2.58 16 18 C -0.56 -27.74 8.46 25.60 0.22 -27.53 16 19 H 0.09 4.17 7.74 -2.91 -0.02 4.15 16 20 C 0.02 0.81 5.20 84.66 0.44 1.25 16 21 N -0.87 -48.22 9.50 21.45 0.20 -48.01 16 22 Si 0.98 39.73 29.54 68.60 2.03 41.76 16 23 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 C 0.41 21.52 2.81 71.98 0.20 21.73 16 27 F -0.22 -11.56 15.48 44.97 0.70 -10.86 16 28 F -0.15 -8.62 12.91 44.97 0.58 -8.04 16 29 F -0.20 -10.05 16.94 44.97 0.76 -9.29 16 30 H 0.07 1.07 5.72 -2.39 -0.01 1.06 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.25 6.48 -2.39 -0.02 1.23 16 36 H 0.08 1.22 8.07 -2.39 -0.02 1.21 16 37 H 0.43 3.16 9.10 -74.06 -0.67 2.48 16 38 H 0.08 1.76 7.49 -2.39 -0.02 1.74 16 39 H 0.08 2.49 7.06 -2.39 -0.02 2.48 16 40 H 0.41 13.86 6.00 -92.71 -0.56 13.30 16 41 H 0.27 14.07 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -70.93 341.68 3.76 -67.17 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.11 Total: 21.95 kcal Atomic # 6 Polarization: 44.17 SS G_CDS: 4.43 Total: 48.60 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.24 Total: -99.13 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.38 Total: -52.16 kcal Atomic # 9 Polarization: -30.23 SS G_CDS: 2.04 Total: -28.19 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -70.93 3.76 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603380975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.074 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds