Wall clock time and date at job start Tue Mar 31 2020 20:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.39446 * 2 1 4 4 C 1.54394 * 110.34242 * 122.23336 * 2 1 3 5 5 N 1.48141 * 104.61814 * 95.00199 * 4 2 1 6 6 C 1.34776 * 127.83849 * 219.58430 * 5 4 2 7 7 O 1.21584 * 120.00277 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99832 * 0.02705 * 6 5 4 9 9 C 1.46496 * 119.99967 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47649 * 325.00131 * 9 8 6 11 11 C 1.50698 * 109.47055 * 204.99829 * 9 8 6 12 12 H 1.08003 * 119.99938 * 265.30579 * 11 9 8 13 13 C 1.37880 * 119.99718 * 85.58376 * 11 9 8 14 14 N 1.31518 * 119.99550 * 184.75449 * 13 11 9 15 15 Si 1.86801 * 119.99986 * 4.75539 * 13 11 9 16 16 H 1.48501 * 109.47022 * 84.64795 * 15 13 11 17 17 H 1.48502 * 109.46889 * 204.64538 * 15 13 11 18 18 H 1.48500 * 109.46951 * 324.64504 * 15 13 11 19 19 C 1.53005 * 109.47034 * 85.00064 * 9 8 6 20 20 F 1.39895 * 109.47336 * 184.13869 * 19 9 8 21 21 F 1.39901 * 109.47128 * 304.14145 * 19 9 8 22 22 F 1.39898 * 109.47131 * 64.13899 * 19 9 8 23 23 C 1.48150 * 104.32596 * 39.84644 * 5 4 2 24 24 C 1.54287 * 110.34221 * 237.76546 * 2 1 3 25 25 C 1.53002 * 110.34355 * 0.10963 * 24 2 1 26 26 C 1.50702 * 110.34234 * 122.26237 * 24 2 1 27 27 O 1.20823 * 119.99737 * 359.97438 * 26 24 2 28 28 O 1.34227 * 120.00282 * 180.02562 * 26 24 2 29 29 H 1.08996 * 109.46745 * 299.22305 * 1 2 3 30 30 H 1.08993 * 109.46940 * 59.22394 * 1 2 3 31 31 H 1.08995 * 109.47085 * 179.22586 * 1 2 3 32 32 H 1.09002 * 110.40461 * 336.21611 * 4 2 1 33 33 H 1.09001 * 110.40452 * 213.78587 * 4 2 1 34 34 H 0.97005 * 120.00081 * 359.97438 * 8 6 5 35 35 H 0.97007 * 119.99351 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.40428 * 78.93858 * 23 5 4 37 37 H 1.08996 * 110.40729 * 201.36535 * 23 5 4 38 38 H 1.09000 * 109.46824 * 59.99489 * 25 24 2 39 39 H 1.09000 * 109.47116 * 179.97438 * 25 24 2 40 40 H 1.08999 * 109.46816 * 299.99901 * 25 24 2 41 41 H 0.96693 * 117.00173 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7721 1.2245 5 7 2.3139 -2.1438 0.7227 6 6 2.0773 -3.3105 1.3546 7 8 2.3370 -4.3634 0.8047 8 7 1.5528 -3.3102 2.5961 9 6 1.2951 -4.5783 3.2828 10 1 0.9812 -5.3278 2.5562 11 6 0.2059 -4.3833 4.3059 12 1 0.4619 -4.1704 5.3333 13 6 -1.1174 -4.4825 3.9314 14 7 -2.0683 -4.2207 4.8014 15 14 -1.5594 -4.9888 2.1885 16 1 -1.5601 -6.4705 2.0885 17 1 -2.9085 -4.4692 1.8492 18 1 -0.5610 -4.4293 1.2422 19 6 2.5725 -5.0489 3.9812 20 9 2.3535 -6.3047 4.5574 21 9 3.6091 -5.1392 3.0461 22 9 2.9230 -4.1329 4.9789 23 6 2.8861 -1.9421 -0.6289 24 6 2.0663 -0.7716 -1.2237 25 6 0.9061 -1.3013 -2.0688 26 6 2.9557 0.1169 -2.0547 27 8 3.1528 1.2601 -1.7169 28 8 3.5280 -0.3613 -3.1707 29 1 -0.3633 0.5017 0.8969 30 1 -0.3633 0.5258 -0.8829 31 1 -0.3633 -1.0275 -0.0139 32 1 1.3223 -0.7870 2.0206 33 1 2.9950 -0.3242 1.5793 34 1 1.3459 -2.4702 3.0350 35 1 -2.9993 -4.2908 4.5380 36 1 3.9404 -1.6742 -0.5591 37 1 2.7607 -2.8408 -1.2327 38 1 0.2972 -0.4658 -2.4142 39 1 1.3006 -1.8429 -2.9286 40 1 0.2941 -1.9721 -1.4659 41 1 4.0899 0.2462 -3.6709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607470977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:42 Heat of formation + Delta-G solvation = -292.603503 kcal Electronic energy + Delta-G solvation = -31832.339702 eV Core-core repulsion = 26910.477753 eV Total energy + Delta-G solvation = -4921.861950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.87138 -48.37875 -48.36045 -42.18633 -40.86512 -39.11182 -37.13745 -36.57653 -34.72696 -34.23048 -32.23306 -30.91779 -28.24204 -26.91744 -26.80680 -25.42096 -23.37553 -22.99899 -21.22677 -20.23206 -20.03519 -19.31423 -19.09455 -18.95987 -18.52241 -18.37680 -17.96715 -17.08477 -16.70637 -16.43375 -16.18097 -15.48618 -15.31038 -15.21425 -15.13863 -14.88982 -14.80275 -14.73000 -14.61085 -14.56136 -14.49084 -14.42335 -14.07762 -13.70602 -13.48394 -13.35024 -13.00005 -12.95391 -12.64882 -12.54653 -12.48349 -12.08657 -12.01777 -11.82993 -11.77073 -11.73428 -11.50744 -11.26586 -10.97284 -10.26707 -9.64782 -8.54350 -6.73029 1.05565 1.24760 1.34148 1.44191 1.49620 1.89565 2.04574 2.18457 2.26296 2.72043 3.04855 3.18386 3.32308 3.35418 3.37501 3.64050 3.70684 4.02021 4.12290 4.25496 4.37613 4.42120 4.53671 4.59403 4.60942 4.69012 4.76811 4.79913 4.93260 5.01567 5.07071 5.10630 5.26023 5.43361 5.48956 5.56728 5.84594 6.09980 6.44862 6.95737 7.00050 7.01815 7.55939 8.57534 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.004407 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.965848 B = 6352.664049 C = 7270.799958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.115 0.885 4 C 0.098 3.902 5 N -0.642 5.642 6 C 0.718 3.282 7 O -0.624 6.624 8 N -0.723 5.723 9 C 0.231 3.769 10 H 0.075 0.925 11 C -0.537 4.537 12 H 0.067 0.933 13 C 0.068 3.932 14 N -0.895 5.895 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.255 1.255 19 C 0.441 3.559 20 F -0.187 7.187 21 F -0.192 7.192 22 F -0.186 7.186 23 C 0.140 3.860 24 C -0.063 4.063 25 C -0.135 4.135 26 C 0.507 3.493 27 O -0.533 6.533 28 O -0.504 6.504 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.405 0.595 35 H 0.280 0.720 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 10.578 -14.153 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.133 0.867 4 C -0.024 4.024 5 N -0.380 5.380 6 C 0.421 3.579 7 O -0.505 6.505 8 N -0.379 5.379 9 C 0.126 3.874 10 H 0.093 0.907 11 C -0.575 4.575 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.745 3.255 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.179 1.179 19 C 0.385 3.615 20 F -0.169 7.169 21 F -0.173 7.173 22 F -0.168 7.168 23 C 0.017 3.983 24 C -0.065 4.065 25 C -0.192 4.192 26 C 0.349 3.651 27 O -0.422 6.422 28 O -0.318 6.318 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 6.265 9.752 -14.115 18.264 hybrid contribution 0.215 0.246 -0.293 0.439 sum 6.480 9.998 -14.408 18.696 Atomic orbital electron populations 1.21950 0.92963 1.01949 1.03299 1.22210 0.97461 1.00267 0.90860 0.86732 1.22721 1.01950 0.80337 0.97439 1.47991 1.67155 1.04543 1.18277 1.15784 0.77840 0.82694 0.81585 1.90854 1.60745 1.30867 1.67997 1.46358 1.66484 1.10294 1.14778 1.19574 0.88370 0.86347 0.93119 0.90727 1.20695 0.89451 1.52451 0.94912 0.91448 1.25473 0.95720 0.92217 1.00453 1.69935 1.01283 1.44826 1.36901 0.86109 0.78601 0.79726 0.81055 1.19520 1.19639 1.17875 1.21529 0.87435 0.75027 0.77516 1.93092 1.94918 1.43170 1.85677 1.93146 1.62554 1.96097 1.65547 1.93080 1.93304 1.66950 1.63455 1.22186 0.96351 0.97369 0.82421 1.21488 0.95448 0.94557 0.94992 1.21920 0.95968 1.02002 0.99261 1.22835 0.77203 0.85902 0.79129 1.90697 1.60260 1.20616 1.70678 1.84510 1.61246 1.49521 1.36520 0.91175 0.90675 0.93418 0.89408 0.89368 0.75726 0.90990 0.90138 0.89552 0.89967 0.90537 0.91922 0.70739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.93 71.98 0.57 -2.14 16 2 C -0.09 -1.73 3.25 -9.88 -0.03 -1.77 16 3 H 0.11 2.18 6.47 -2.39 -0.02 2.17 16 4 C 0.10 2.23 6.46 86.54 0.56 2.79 16 5 N -0.64 -19.16 3.31 -825.09 -2.73 -21.90 16 6 C 0.72 28.22 7.87 179.05 1.41 29.63 16 7 O -0.62 -28.82 15.21 -3.98 -0.06 -28.88 16 8 N -0.72 -29.06 4.92 -461.41 -2.27 -31.33 16 9 C 0.23 10.62 1.45 44.25 0.06 10.68 16 10 H 0.08 3.65 5.33 -2.39 -0.01 3.64 16 11 C -0.54 -27.27 8.68 25.60 0.22 -27.05 16 12 H 0.07 3.76 7.69 -2.91 -0.02 3.74 16 13 C 0.07 3.50 5.47 84.65 0.46 3.97 16 14 N -0.90 -48.50 13.96 21.45 0.30 -48.20 16 15 Si 0.92 40.81 26.91 68.60 1.85 42.66 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.25 -11.38 6.84 99.48 0.68 -10.70 16 19 C 0.44 19.66 2.83 71.98 0.20 19.86 16 20 F -0.19 -8.43 17.12 44.97 0.77 -7.66 16 21 F -0.19 -8.49 15.57 44.97 0.70 -7.79 16 22 F -0.19 -8.04 16.65 44.97 0.75 -7.30 16 23 C 0.14 3.43 6.15 86.67 0.53 3.96 16 24 C -0.06 -1.23 0.97 -51.88 -0.05 -1.28 16 25 C -0.13 -2.43 7.21 71.98 0.52 -1.91 16 26 C 0.51 9.15 6.85 71.24 0.49 9.64 16 27 O -0.53 -11.99 16.01 21.97 0.35 -11.64 16 28 O -0.50 -6.44 13.28 -51.39 -0.68 -7.12 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.17 6.98 -2.39 -0.02 1.15 16 31 H 0.05 1.08 6.62 -2.39 -0.02 1.06 16 32 H 0.09 1.99 6.58 -2.39 -0.02 1.98 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 14.73 6.99 -92.70 -0.65 14.08 16 35 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 36 H 0.08 1.79 7.86 -2.38 -0.02 1.77 16 37 H 0.09 2.32 7.62 -2.39 -0.02 2.30 16 38 H 0.08 1.21 6.89 -2.39 -0.02 1.20 16 39 H 0.08 1.27 8.07 -2.39 -0.02 1.25 16 40 H 0.06 1.38 6.72 -2.39 -0.02 1.37 16 41 H 0.43 1.63 9.10 -74.06 -0.67 0.96 16 Total: -1.00 -66.29 346.61 3.70 -62.60 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.22 Total: 20.18 kcal Atomic # 6 Polarization: 41.43 SS G_CDS: 4.95 Total: 46.38 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.70 Total: -101.43 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.39 Total: -47.65 kcal Atomic # 9 Polarization: -24.96 SS G_CDS: 2.22 Total: -22.74 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.85 Total: 42.66 kcal Total: -66.29 3.70 -62.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607470977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.005 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -296.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds