Wall clock time and date at job start Tue Mar 31 2020 20:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.87744 * 2 1 4 4 C 1.54331 * 109.88463 * 121.17428 * 2 1 3 5 5 H 1.08998 * 110.71432 * 23.24747 * 4 2 1 6 6 N 1.46903 * 110.71682 * 259.97466 * 4 2 1 7 7 C 1.46909 * 110.99577 * 154.99708 * 6 4 2 8 8 C 1.50691 * 109.46772 * 179.97438 * 7 6 4 9 9 O 1.21295 * 120.00430 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00138 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99816 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00234 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00430 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46899 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47283 * 120.00013 * 15 13 11 18 18 H 1.48500 * 109.47555 * 240.00311 * 15 13 11 19 19 C 1.55151 * 102.94406 * 141.61193 * 4 2 1 20 20 C 1.54917 * 101.58125 * 324.49857 * 19 4 2 21 21 N 1.47022 * 109.88717 * 238.98276 * 2 1 3 22 22 C 1.34779 * 125.64355 * 61.67224 * 21 2 1 23 23 O 1.21614 * 120.00230 * 356.53139 * 22 21 2 24 24 C 1.47260 * 119.99521 * 176.53013 * 22 21 2 25 25 N 1.30566 * 125.54044 * 186.75144 * 24 22 21 26 26 C 1.30701 * 115.90226 * 180.02562 * 25 24 22 27 27 C 1.34228 * 115.78728 * 359.97438 * 26 25 24 28 28 S 1.71067 * 109.09455 * 359.73186 * 27 26 25 29 29 H 1.09003 * 109.47261 * 179.56768 * 1 2 3 30 30 H 1.08997 * 109.47185 * 59.56322 * 1 2 3 31 31 H 1.09005 * 109.47219 * 299.56131 * 1 2 3 32 32 H 1.00902 * 110.99719 * 278.95064 * 6 4 2 33 33 H 1.08994 * 109.47092 * 300.00162 * 7 6 4 34 34 H 1.08999 * 109.46918 * 59.99984 * 7 6 4 35 35 H 0.96998 * 119.99990 * 0.02562 * 10 8 7 36 36 H 0.96995 * 120.00396 * 180.02562 * 14 13 11 37 37 H 1.09002 * 111.00521 * 206.42879 * 19 4 2 38 38 H 1.08993 * 111.03998 * 82.58568 * 19 4 2 39 39 H 1.08997 * 110.36753 * 278.17251 * 20 19 4 40 40 H 1.08995 * 110.36652 * 155.85160 * 20 19 4 41 41 H 1.08008 * 122.10023 * 180.02562 * 26 25 24 42 42 H 1.08000 * 125.45120 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 1.2417 5 1 1.3051 -1.4482 1.6162 6 7 2.4566 0.1956 2.2906 7 6 2.3871 -0.4292 3.6184 8 6 2.8059 0.5697 4.6661 9 8 3.1298 1.6919 4.3390 10 7 2.8205 0.2162 5.9666 11 6 3.2020 1.1249 6.9197 12 1 3.4904 2.1241 6.6284 13 6 3.2165 0.7606 8.2605 14 7 2.8651 -0.4550 8.6150 15 14 3.7356 1.9988 9.5592 16 1 4.0803 3.2869 8.9054 17 1 2.6185 2.2124 10.5142 18 1 4.9201 1.4819 10.2907 19 6 3.2876 -1.5151 0.6904 20 6 2.8145 -1.8784 -0.7394 21 7 2.0301 -0.7124 -1.1849 22 6 1.8085 -0.3578 -2.4661 23 8 1.0918 0.5916 -2.7192 24 6 2.4343 -1.1201 -3.5597 25 7 2.3969 -0.8013 -4.8253 26 6 3.0182 -1.6152 -5.6377 27 6 3.6137 -2.6720 -5.0630 28 16 3.3615 -2.6055 -3.3723 29 1 -0.3634 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8860 31 1 -0.3634 0.5070 0.8939 32 1 3.3790 0.5633 2.1118 33 1 1.3654 -0.7546 3.8139 34 1 3.0549 -1.2901 3.6502 35 1 2.5618 -0.6813 6.2281 36 1 2.8749 -0.7092 9.5510 37 1 3.4852 -2.4128 1.2763 38 1 4.1658 -0.8703 0.6592 39 1 2.1886 -2.7705 -0.7167 40 1 3.6716 -2.0319 -1.3950 41 1 3.0510 -1.4474 -6.7041 42 1 4.1679 -3.4387 -5.5840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676674203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:52 Heat of formation + Delta-G solvation = -6.132042 kcal Electronic energy + Delta-G solvation = -26195.655585 eV Core-core repulsion = 22303.118333 eV Total energy + Delta-G solvation = -3892.537252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78531 -39.88035 -38.43800 -37.70015 -34.90495 -33.85434 -32.04320 -31.31792 -31.07257 -30.38208 -27.22556 -26.54468 -25.12776 -23.76787 -23.43942 -21.96751 -20.55969 -19.67749 -19.28182 -18.56175 -17.94371 -17.11475 -16.93120 -16.03502 -15.99927 -15.57994 -15.22566 -14.97623 -14.57733 -14.26700 -14.15715 -13.95460 -13.88776 -13.77485 -13.36990 -13.31327 -13.05380 -12.55708 -12.29371 -12.25855 -11.78834 -11.75055 -11.58785 -11.47069 -11.20471 -11.06312 -10.91262 -10.66211 -10.36403 -10.25516 -10.12470 -9.99257 -9.55378 -9.37292 -9.02327 -8.53843 -8.15895 -7.99864 -6.45212 -3.85983 -0.16978 0.73152 1.19721 1.99272 2.28218 2.88754 3.14308 3.25461 3.32663 3.72307 3.85480 3.93117 4.11491 4.22838 4.41174 4.50426 4.65753 4.71152 4.84870 4.90995 4.98436 5.04799 5.11093 5.22428 5.33491 5.39788 5.48289 5.56078 5.61555 5.69483 5.73860 5.89889 5.98874 6.11556 6.20290 6.26144 6.95884 7.07423 7.19704 7.50088 7.52615 7.74055 8.02855 8.57123 9.14688 9.50242 10.01294 10.72467 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030847 B = 0.001981 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.498942 B =14132.897183 C =14520.503028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.094 0.906 4 C 0.084 3.916 5 H 0.099 0.901 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.439 3.561 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.163 4.163 20 C 0.090 3.910 21 N -0.607 5.607 22 C 0.609 3.391 23 O -0.494 6.494 24 C -0.002 4.002 25 N -0.400 5.400 26 C 0.027 3.973 27 C -0.283 4.283 28 S 0.195 5.805 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.355 0.645 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.178 0.822 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -12.550 -22.789 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.112 0.888 4 C -0.028 4.028 5 H 0.117 0.883 6 N -0.288 5.288 7 C -0.080 4.080 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.203 4.203 20 C -0.035 4.035 21 N -0.343 5.343 22 C 0.392 3.608 23 O -0.367 6.367 24 C -0.278 4.278 25 N -0.116 5.116 26 C -0.129 4.129 27 C -0.423 4.423 28 S 0.449 5.551 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.195 0.805 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.358 -11.137 -22.284 24.915 hybrid contribution 1.105 -0.775 -0.361 1.397 sum 1.463 -11.912 -22.645 25.629 Atomic orbital electron populations 1.22104 0.93822 1.02076 1.03717 1.21640 0.95155 0.96964 0.81807 0.88835 1.22700 0.96199 0.92632 0.91230 0.88275 1.59921 1.35124 1.33862 0.99849 1.21705 1.01853 0.95608 0.88870 1.19777 0.85138 0.89142 0.83489 1.90542 1.53383 1.21728 1.80980 1.41864 1.58846 1.14651 1.04599 1.19754 1.41369 0.95835 0.85860 0.87835 1.25265 0.97457 0.97001 0.98244 1.69613 1.48242 1.18070 1.18352 0.85801 0.78094 0.80365 0.80100 1.19191 1.20727 1.20779 1.23597 0.99777 1.02592 0.94323 1.22552 0.95183 0.89301 0.96451 1.48326 1.52514 1.28803 1.04668 1.16219 0.81254 0.83369 0.79913 1.90868 1.36316 1.27277 1.82267 1.27502 1.06137 0.98785 0.95330 1.66614 1.16057 1.28312 1.00601 1.21844 0.98110 0.91218 1.01722 1.27189 1.08448 1.05391 1.01289 1.84252 1.45469 1.23015 1.02347 0.92811 0.91202 0.90452 0.82448 0.89357 0.93573 0.77463 0.91907 0.88949 0.89648 0.89847 0.90556 0.80495 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.10 37.15 0.34 -1.50 16 2 C 0.15 1.69 3.23 -66.95 -0.22 1.48 16 3 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 4 C 0.08 0.87 2.80 -65.88 -0.18 0.68 16 5 H 0.10 0.93 7.54 -51.93 -0.39 0.54 16 6 N -0.66 -9.29 5.94 -106.05 -0.63 -9.92 16 7 C 0.05 0.81 6.03 -4.98 -0.03 0.78 16 8 C 0.44 9.81 7.82 -10.99 -0.09 9.73 16 9 O -0.58 -15.27 15.78 5.54 0.09 -15.18 16 10 N -0.56 -13.70 5.29 -10.97 -0.06 -13.75 16 11 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 15 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.16 -1.27 6.67 -24.58 -0.16 -1.43 16 20 C 0.09 0.65 5.62 -2.53 -0.01 0.64 16 21 N -0.61 -6.46 3.06 -164.33 -0.50 -6.96 16 22 C 0.61 7.98 7.65 -12.59 -0.10 7.88 16 23 O -0.49 -8.31 15.99 5.27 0.08 -8.23 16 24 C 0.00 -0.02 7.37 -14.42 -0.11 -0.12 16 25 N -0.40 -4.86 10.60 -11.50 -0.12 -4.98 16 26 C 0.03 0.23 11.24 -19.45 -0.22 0.01 16 27 C -0.28 -1.76 11.09 29.32 0.33 -1.43 16 28 S 0.19 1.31 18.71 -107.50 -2.01 -0.70 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.92 6.77 -51.93 -0.35 0.57 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.35 5.25 7.91 -39.29 -0.31 4.94 16 33 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.71 7.77 -51.93 -0.40 0.30 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.48 4.93 -28.56 -0.14 0.34 16 41 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -34.20 364.33 -7.88 -42.08 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.23 Total: 10.77 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.69 Total: 8.92 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.59 Total: -58.83 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.01 Total: -0.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.20 -7.88 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676674203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.948 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds