Wall clock time and date at job start Tue Mar 31 2020 20:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.87744 * 2 1 4 4 C 1.54331 * 109.88463 * 121.17428 * 2 1 3 5 5 H 1.08998 * 110.71432 * 23.24747 * 4 2 1 6 6 N 1.46903 * 110.71682 * 259.97466 * 4 2 1 7 7 C 1.46909 * 110.99577 * 154.99708 * 6 4 2 8 8 C 1.50691 * 109.46772 * 179.97438 * 7 6 4 9 9 O 1.21295 * 120.00430 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00138 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99816 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00234 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00430 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46899 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47283 * 120.00013 * 15 13 11 18 18 H 1.48500 * 109.47555 * 240.00311 * 15 13 11 19 19 C 1.55151 * 102.94406 * 141.61193 * 4 2 1 20 20 C 1.54917 * 101.58125 * 324.49857 * 19 4 2 21 21 N 1.47022 * 109.88717 * 238.98276 * 2 1 3 22 22 C 1.34779 * 125.64355 * 61.67224 * 21 2 1 23 23 O 1.21614 * 120.00230 * 356.53139 * 22 21 2 24 24 C 1.47260 * 119.99521 * 176.53013 * 22 21 2 25 25 N 1.30566 * 125.54044 * 186.75144 * 24 22 21 26 26 C 1.30701 * 115.90226 * 180.02562 * 25 24 22 27 27 C 1.34228 * 115.78728 * 359.97438 * 26 25 24 28 28 S 1.71067 * 109.09455 * 359.73186 * 27 26 25 29 29 H 1.09003 * 109.47261 * 179.56768 * 1 2 3 30 30 H 1.08997 * 109.47185 * 59.56322 * 1 2 3 31 31 H 1.09005 * 109.47219 * 299.56131 * 1 2 3 32 32 H 1.00902 * 110.99719 * 278.95064 * 6 4 2 33 33 H 1.08994 * 109.47092 * 300.00162 * 7 6 4 34 34 H 1.08999 * 109.46918 * 59.99984 * 7 6 4 35 35 H 0.96998 * 119.99990 * 0.02562 * 10 8 7 36 36 H 0.96995 * 120.00396 * 180.02562 * 14 13 11 37 37 H 1.09002 * 111.00521 * 206.42879 * 19 4 2 38 38 H 1.08993 * 111.03998 * 82.58568 * 19 4 2 39 39 H 1.08997 * 110.36753 * 278.17251 * 20 19 4 40 40 H 1.08995 * 110.36652 * 155.85160 * 20 19 4 41 41 H 1.08008 * 122.10023 * 180.02562 * 26 25 24 42 42 H 1.08000 * 125.45120 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 1.2417 5 1 1.3051 -1.4482 1.6162 6 7 2.4566 0.1956 2.2906 7 6 2.3871 -0.4292 3.6184 8 6 2.8059 0.5697 4.6661 9 8 3.1298 1.6919 4.3390 10 7 2.8205 0.2162 5.9666 11 6 3.2020 1.1249 6.9197 12 1 3.4904 2.1241 6.6284 13 6 3.2165 0.7606 8.2605 14 7 2.8651 -0.4550 8.6150 15 14 3.7356 1.9988 9.5592 16 1 4.0803 3.2869 8.9054 17 1 2.6185 2.2124 10.5142 18 1 4.9201 1.4819 10.2907 19 6 3.2876 -1.5151 0.6904 20 6 2.8145 -1.8784 -0.7394 21 7 2.0301 -0.7124 -1.1849 22 6 1.8085 -0.3578 -2.4661 23 8 1.0918 0.5916 -2.7192 24 6 2.4343 -1.1201 -3.5597 25 7 2.3969 -0.8013 -4.8253 26 6 3.0182 -1.6152 -5.6377 27 6 3.6137 -2.6720 -5.0630 28 16 3.3615 -2.6055 -3.3723 29 1 -0.3634 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8860 31 1 -0.3634 0.5070 0.8939 32 1 3.3790 0.5633 2.1118 33 1 1.3654 -0.7546 3.8139 34 1 3.0549 -1.2901 3.6502 35 1 2.5618 -0.6813 6.2281 36 1 2.8749 -0.7092 9.5510 37 1 3.4852 -2.4128 1.2763 38 1 4.1658 -0.8703 0.6592 39 1 2.1886 -2.7705 -0.7167 40 1 3.6716 -2.0319 -1.3950 41 1 3.0510 -1.4474 -6.7041 42 1 4.1679 -3.4387 -5.5840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676674203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:51 Heat of formation + Delta-G solvation = -33.882807 kcal Electronic energy + Delta-G solvation = -26196.858949 eV Core-core repulsion = 22303.118333 eV Total energy + Delta-G solvation = -3893.740616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62531 -40.60816 -40.04630 -38.79809 -36.22469 -35.59578 -33.25804 -32.87958 -31.95679 -31.12401 -28.51453 -27.33401 -26.54224 -25.04976 -24.21769 -22.71909 -21.49634 -20.92695 -20.32458 -19.87935 -19.33631 -18.01723 -17.75476 -17.52594 -16.79492 -16.76602 -16.32994 -16.20476 -15.84672 -15.64792 -15.23115 -15.00886 -14.99004 -14.57632 -14.36996 -14.12235 -14.08696 -13.95296 -13.49024 -13.34115 -13.09808 -13.08211 -12.82172 -12.61332 -12.37953 -12.24207 -12.11081 -12.04354 -11.67377 -11.53769 -11.48556 -10.76201 -10.74622 -10.31276 -9.97940 -9.97402 -9.86324 -9.27151 -8.44632 -5.92386 -0.82414 0.10426 0.63011 1.26275 1.37825 1.43512 1.46982 1.57127 2.09466 2.09933 2.31002 2.90335 3.05224 3.23444 3.37908 3.51781 3.75087 3.83182 4.01095 4.12227 4.21759 4.29561 4.34638 4.36909 4.40864 4.46634 4.56819 4.58539 4.64947 4.71918 4.99477 5.01505 5.02833 5.06624 5.22121 5.27551 5.44167 5.92403 6.12830 6.15436 6.37519 6.56164 6.63789 6.86219 7.16416 7.60811 8.16761 8.72749 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030847 B = 0.001981 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.498942 B =14132.897183 C =14520.503028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.090 3.910 5 H 0.120 0.880 6 N -0.676 5.676 7 C 0.070 3.930 8 C 0.436 3.564 9 O -0.627 6.627 10 N -0.573 5.573 11 C -0.331 4.331 12 H 0.076 0.924 13 C -0.012 4.012 14 N -0.918 5.918 15 Si 0.989 3.011 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.154 4.154 20 C 0.086 3.914 21 N -0.602 5.602 22 C 0.602 3.398 23 O -0.553 6.553 24 C -0.056 4.056 25 N -0.442 5.442 26 C 0.003 3.997 27 C -0.264 4.264 28 S 0.279 5.721 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.348 0.652 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.398 0.602 36 H 0.277 0.723 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.196 0.804 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -16.223 -23.001 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.021 4.021 5 H 0.138 0.862 6 N -0.307 5.307 7 C -0.062 4.062 8 C 0.224 3.776 9 O -0.513 6.513 10 N -0.211 5.211 11 C -0.461 4.461 12 H 0.094 0.906 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.813 3.187 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.194 4.194 20 C -0.037 4.037 21 N -0.337 5.337 22 C 0.388 3.612 23 O -0.431 6.431 24 C -0.329 4.329 25 N -0.160 5.160 26 C -0.152 4.152 27 C -0.404 4.404 28 S 0.533 5.467 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.213 0.787 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.581 -14.871 -22.473 26.994 hybrid contribution 0.792 0.291 -0.405 0.936 sum 2.373 -14.580 -22.878 27.232 Atomic orbital electron populations 1.22015 0.94003 1.02809 1.02181 1.21530 0.95056 0.96005 0.83216 0.92086 1.22684 0.97939 0.92064 0.89381 0.86175 1.59826 1.35007 1.35686 1.00208 1.21558 1.03456 0.94103 0.87112 1.21008 0.82927 0.89724 0.83957 1.90516 1.54801 1.24262 1.81753 1.41920 1.59536 1.14489 1.05117 1.19657 1.43391 0.95665 0.87375 0.90586 1.25968 0.97041 0.98741 0.99454 1.69659 1.48251 1.18944 1.19089 0.84925 0.78216 0.77884 0.77642 1.20048 1.19788 1.19550 1.23574 0.98028 1.03185 0.94574 1.22860 0.95751 0.88821 0.96256 1.48326 1.52179 1.29440 1.03719 1.16657 0.80679 0.82935 0.80951 1.90814 1.39033 1.29904 1.83321 1.27113 1.09291 1.01827 0.94646 1.66575 1.17347 1.30418 1.01687 1.22183 0.98799 0.91765 1.02485 1.27741 1.06399 1.04830 1.01463 1.83759 1.42266 1.18619 1.02091 0.90828 0.93702 0.91004 0.83185 0.87308 0.90148 0.76797 0.91347 0.85955 0.90285 0.86902 0.89317 0.78688 0.76237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.10 71.98 0.66 -2.94 16 2 C 0.15 3.38 3.23 45.34 0.15 3.53 16 3 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 4 C 0.09 1.67 2.80 46.10 0.13 1.80 16 5 H 0.12 1.78 7.54 -2.39 -0.02 1.76 16 6 N -0.68 -18.45 5.94 -489.44 -2.91 -21.36 16 7 C 0.07 2.02 6.03 85.55 0.52 2.54 16 8 C 0.44 19.50 7.82 87.65 0.69 20.19 16 9 O -0.63 -33.77 15.78 -3.08 -0.05 -33.82 16 10 N -0.57 -28.03 5.29 -306.99 -1.62 -29.65 16 11 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 13 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 14 N -0.92 -48.15 13.05 21.66 0.28 -47.87 16 15 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 C -0.15 -1.87 6.67 31.99 0.21 -1.66 16 20 C 0.09 0.98 5.62 86.86 0.49 1.47 16 21 N -0.60 -12.56 3.06 -792.08 -2.43 -14.99 16 22 C 0.60 16.48 7.65 86.61 0.66 17.14 16 23 O -0.55 -20.35 15.99 -4.08 -0.07 -20.42 16 24 C -0.06 -1.25 7.37 87.25 0.64 -0.60 16 25 N -0.44 -10.90 10.60 -190.30 -2.02 -12.92 16 26 C 0.00 0.05 11.24 83.95 0.94 1.00 16 27 C -0.26 -2.32 11.09 66.90 0.74 -1.58 16 28 S 0.28 2.81 18.71 -56.49 -1.06 1.75 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.28 6.77 -2.39 -0.02 1.27 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.35 10.25 7.91 -89.69 -0.71 9.54 16 33 H 0.11 2.78 8.08 -2.39 -0.02 2.76 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.40 18.19 7.90 -92.71 -0.73 17.45 16 36 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.79 4.93 -17.25 -0.09 0.70 16 41 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.22 0.16 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -80.54 364.33 -1.16 -81.70 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.43 Total: 30.04 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.11 Total: 23.13 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -8.69 Total: -126.78 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.11 Total: -54.23 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.06 Total: 1.75 kcal Total: -80.54 -1.16 -81.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676674203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.821 kcal (2) G-P(sol) polarization free energy of solvation -80.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds