Wall clock time and date at job start Tue Mar 31 2020 20:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.32400 * 2 1 4 4 C 1.54909 * 110.37070 * 237.64274 * 2 1 3 5 5 C 1.55157 * 101.57958 * 204.14948 * 4 2 1 6 6 H 1.09002 * 110.72213 * 277.13898 * 5 4 2 7 7 N 1.46502 * 110.86875 * 153.93745 * 5 4 2 8 8 C 1.34774 * 119.99871 * 157.55098 * 7 5 4 9 9 O 1.21604 * 120.00134 * 359.97438 * 8 7 5 10 10 C 1.47410 * 119.99945 * 179.97438 * 8 7 5 11 11 N 1.31618 * 125.86505 * 359.68565 * 10 8 7 12 12 C 1.33101 * 109.09530 * 179.83130 * 11 10 8 13 13 C 1.35561 * 108.34802 * 0.43412 * 12 11 10 14 14 N 1.35393 * 107.16416 * 359.74034 * 13 12 11 15 15 H 0.97001 * 126.44264 * 180.02562 * 14 13 12 16 16 C 1.54322 * 102.94206 * 35.50243 * 5 4 2 17 17 N 1.47018 * 107.27336 * 337.80559 * 16 5 4 18 18 C 1.34778 * 125.65052 * 178.98072 * 17 16 5 19 19 O 1.21284 * 120.00097 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.99810 * 359.96739 * 18 17 16 21 21 S 1.81001 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.76194 * 100.00181 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00047 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00390 * 180.02562 * 22 21 20 25 25 N 1.31635 * 119.99482 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00245 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47485 * 89.99910 * 26 24 22 28 28 H 1.48505 * 109.46810 * 210.00115 * 26 24 22 29 29 H 1.48500 * 109.47220 * 329.99692 * 26 24 22 30 30 H 1.08997 * 109.48003 * 299.21940 * 1 2 3 31 31 H 1.09003 * 109.46981 * 59.22447 * 1 2 3 32 32 H 1.09004 * 109.47042 * 179.21586 * 1 2 3 33 33 H 1.09000 * 111.00466 * 86.07544 * 4 2 1 34 34 H 1.08997 * 111.00194 * 322.22157 * 4 2 1 35 35 H 0.96999 * 120.00288 * 337.54449 * 7 5 4 36 36 H 1.08000 * 125.82272 * 180.13567 * 12 11 10 37 37 H 1.08004 * 126.41507 * 179.76824 * 13 12 11 38 38 H 1.08998 * 109.88021 * 97.22263 * 16 5 4 39 39 H 1.09004 * 109.88163 * 218.38680 * 16 5 4 40 40 H 1.09003 * 109.47500 * 300.00492 * 20 18 17 41 41 H 1.09001 * 109.46727 * 60.00775 * 20 18 17 42 42 H 0.97002 * 119.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7772 -1.2267 5 6 3.4778 -1.2004 -0.7327 6 1 4.1945 -0.3909 -0.8716 7 7 3.9291 -2.4132 -1.4194 8 6 5.2449 -2.6957 -1.4934 9 8 6.0574 -1.9436 -0.9905 10 6 5.6990 -3.9163 -2.1839 11 7 4.9235 -4.8096 -2.7610 12 6 5.6810 -5.7713 -3.2834 13 6 6.9791 -5.4823 -3.0204 14 7 6.9972 -4.3179 -2.3297 15 1 7.7837 -3.8554 -2.0005 16 6 3.2493 -1.4758 0.7684 17 7 2.0430 -0.7371 1.1691 18 6 1.4971 -0.7336 2.4014 19 8 0.4963 -0.0841 2.6195 20 6 2.1302 -1.5368 3.5083 21 16 1.1712 -1.3288 5.0292 22 6 2.1077 -2.3445 6.1227 23 1 2.9858 -2.8597 5.7623 24 6 1.7170 -2.4826 7.4474 25 7 0.6470 -1.8542 7.8868 26 14 2.7102 -3.5588 8.6069 27 1 3.7626 -2.7412 9.2619 28 1 1.8123 -4.1314 9.6420 29 1 3.3452 -4.6596 7.8387 30 1 -0.3635 0.5016 0.8968 31 1 -0.3633 0.5258 -0.8830 32 1 -0.3633 -1.0276 -0.0141 33 1 2.1399 -0.1287 -2.0999 34 1 1.4512 -1.6496 -1.4389 35 1 3.2810 -3.0130 -1.8208 36 1 5.3224 -6.6369 -3.8206 37 1 7.8379 -6.0705 -3.3083 38 1 3.1013 -2.5434 0.9311 39 1 4.1064 -1.1263 1.3441 40 1 2.1451 -2.5906 3.2298 41 1 3.1504 -1.1896 3.6713 42 1 0.3741 -1.9504 8.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:48 Heat of formation + Delta-G solvation = -4.122176 kcal Electronic energy + Delta-G solvation = -26144.275032 eV Core-core repulsion = 22251.824933 eV Total energy + Delta-G solvation = -3892.450098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.67146 -40.48355 -39.34364 -37.30788 -34.70922 -33.11244 -32.41210 -32.22465 -30.94965 -29.45773 -28.64091 -25.90246 -25.46147 -24.53383 -22.40363 -22.03589 -21.40811 -20.82293 -19.37263 -18.88367 -17.59166 -17.18767 -16.68714 -16.60718 -16.04424 -15.70171 -15.06488 -14.78841 -14.61557 -14.51533 -14.39524 -14.19531 -14.04291 -13.72069 -13.63587 -13.10849 -12.84514 -12.59748 -12.31230 -12.10841 -11.99889 -11.66123 -11.25402 -11.06919 -11.04377 -10.97808 -10.81546 -10.76285 -10.74559 -10.70441 -9.80005 -9.69062 -9.15093 -9.04919 -9.04303 -8.50969 -8.21968 -6.48166 -6.20099 -3.90321 0.89235 2.06032 2.13890 2.83848 2.97713 3.04770 3.11114 3.23653 3.27830 3.31914 3.62497 3.83672 4.14341 4.22188 4.30491 4.48933 4.69937 4.75492 4.88816 4.90010 5.00726 5.09530 5.15082 5.34557 5.42109 5.42987 5.51246 5.59462 5.63395 5.66284 5.71700 5.91640 6.01106 6.08681 6.11070 6.17124 6.31386 6.61067 6.65336 6.92246 7.33422 7.61379 7.65890 7.68353 8.37135 8.58328 9.25340 10.87362 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.002758 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.253196 B =10151.480152 C =12303.415577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.135 4.135 5 C 0.136 3.864 6 H 0.111 0.889 7 N -0.694 5.694 8 C 0.610 3.390 9 O -0.536 6.536 10 C 0.142 3.858 11 N -0.442 5.442 12 C -0.027 4.027 13 C -0.021 4.021 14 N -0.524 5.524 15 H 0.431 0.569 16 C 0.091 3.909 17 N -0.622 5.622 18 C 0.553 3.447 19 O -0.510 6.510 20 C -0.149 4.149 21 S -0.059 6.059 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -4.529 -26.884 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.173 4.173 5 C 0.031 3.969 6 H 0.128 0.872 7 N -0.346 5.346 8 C 0.394 3.606 9 O -0.411 6.411 10 C -0.119 4.119 11 N -0.164 5.164 12 C -0.180 4.180 13 C -0.161 4.161 14 N -0.126 5.126 15 H 0.271 0.729 16 C -0.034 4.034 17 N -0.361 5.361 18 C 0.342 3.658 19 O -0.384 6.384 20 C -0.299 4.299 21 S 0.168 5.832 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.197 0.803 37 H 0.205 0.795 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.433 -2.887 -25.945 27.757 hybrid contribution 2.990 -1.889 0.416 3.562 sum 12.423 -4.777 -25.529 28.790 Atomic orbital electron populations 1.22181 0.93353 1.02943 1.03860 1.21803 0.95831 0.95407 0.83454 0.90465 1.23201 0.94310 1.01564 0.98268 1.22044 0.96898 0.87094 0.90905 0.87154 1.45560 1.06645 1.25716 1.56675 1.16468 0.83147 0.82371 0.78640 1.90881 1.53551 1.49212 1.47468 1.22585 0.81183 0.99732 1.08384 1.70207 1.33236 1.02286 1.10709 1.22540 0.89198 1.00680 1.05597 1.23052 1.01407 0.90093 1.01535 1.42960 1.09440 1.19191 1.40965 0.72897 1.22368 0.88573 0.97642 0.94773 1.48512 1.28323 1.49767 1.09461 1.19959 0.83597 0.81210 0.81063 1.90645 1.24473 1.42423 1.80838 1.23537 1.04558 1.01800 1.00011 1.85342 1.36303 1.64319 0.97286 1.22859 1.14827 1.33498 0.97076 0.90991 1.24986 0.95334 0.95971 0.97276 1.70022 1.23171 1.40652 1.16462 0.86172 0.79483 0.80016 0.79862 1.20266 1.20740 1.19712 0.88862 0.92287 0.92520 0.88986 0.89507 0.74723 0.80261 0.79481 0.90826 0.90462 0.89432 0.89351 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 8.71 37.15 0.32 -1.72 16 2 C 0.14 1.59 3.77 -66.42 -0.25 1.34 16 3 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 4 C -0.13 -1.07 6.13 -24.58 -0.15 -1.22 16 5 C 0.14 1.25 3.27 -66.10 -0.22 1.03 16 6 H 0.11 1.04 7.62 -51.93 -0.40 0.65 16 7 N -0.69 -6.10 5.12 -53.11 -0.27 -6.37 16 8 C 0.61 6.40 7.81 -12.53 -0.10 6.30 16 9 O -0.54 -6.92 16.78 5.27 0.09 -6.83 16 10 C 0.14 1.35 7.95 -154.51 -1.23 0.12 16 11 N -0.44 -4.19 10.89 -11.26 -0.12 -4.31 16 12 C -0.03 -0.19 11.85 -17.96 -0.21 -0.40 16 13 C -0.02 -0.11 12.00 -16.94 -0.20 -0.31 16 14 N -0.52 -3.57 6.14 -10.78 -0.07 -3.64 16 15 H 0.43 2.14 8.96 -40.82 -0.37 1.78 16 16 C 0.09 1.10 6.24 -3.07 -0.02 1.08 16 17 N -0.62 -9.00 3.24 -163.05 -0.53 -9.53 16 18 C 0.55 10.68 7.65 -10.98 -0.08 10.59 16 19 O -0.51 -11.41 13.52 5.55 0.08 -11.33 16 20 C -0.15 -3.14 5.35 36.01 0.19 -2.94 16 21 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 22 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 23 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 25 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 26 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 29 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.09 1.48 5.89 -51.93 -0.31 1.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.65 7.93 -51.93 -0.41 0.23 16 35 H 0.42 3.16 8.23 -40.82 -0.34 2.83 16 36 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.19 0.22 8.06 -52.48 -0.42 -0.20 16 38 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -37.19 371.96 -9.05 -46.25 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.58 Total: 2.27 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.75 Total: 0.72 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.26 Total: -49.52 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.16 Total: -18.17 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.19 -9.05 -46.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.124 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds