Wall clock time and date at job start Tue Mar 31 2020 20:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.32400 * 2 1 4 4 C 1.54909 * 110.37070 * 237.64274 * 2 1 3 5 5 C 1.55157 * 101.57958 * 204.14948 * 4 2 1 6 6 H 1.09002 * 110.72213 * 277.13898 * 5 4 2 7 7 N 1.46502 * 110.86875 * 153.93745 * 5 4 2 8 8 C 1.34774 * 119.99871 * 157.55098 * 7 5 4 9 9 O 1.21604 * 120.00134 * 359.97438 * 8 7 5 10 10 C 1.47410 * 119.99945 * 179.97438 * 8 7 5 11 11 N 1.31618 * 125.86505 * 359.68565 * 10 8 7 12 12 C 1.33101 * 109.09530 * 179.83130 * 11 10 8 13 13 C 1.35561 * 108.34802 * 0.43412 * 12 11 10 14 14 N 1.35393 * 107.16416 * 359.74034 * 13 12 11 15 15 H 0.97001 * 126.44264 * 180.02562 * 14 13 12 16 16 C 1.54322 * 102.94206 * 35.50243 * 5 4 2 17 17 N 1.47018 * 107.27336 * 337.80559 * 16 5 4 18 18 C 1.34778 * 125.65052 * 178.98072 * 17 16 5 19 19 O 1.21284 * 120.00097 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.99810 * 359.96739 * 18 17 16 21 21 S 1.81001 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.76194 * 100.00181 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00047 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00390 * 180.02562 * 22 21 20 25 25 N 1.31635 * 119.99482 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00245 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47485 * 89.99910 * 26 24 22 28 28 H 1.48505 * 109.46810 * 210.00115 * 26 24 22 29 29 H 1.48500 * 109.47220 * 329.99692 * 26 24 22 30 30 H 1.08997 * 109.48003 * 299.21940 * 1 2 3 31 31 H 1.09003 * 109.46981 * 59.22447 * 1 2 3 32 32 H 1.09004 * 109.47042 * 179.21586 * 1 2 3 33 33 H 1.09000 * 111.00466 * 86.07544 * 4 2 1 34 34 H 1.08997 * 111.00194 * 322.22157 * 4 2 1 35 35 H 0.96999 * 120.00288 * 337.54449 * 7 5 4 36 36 H 1.08000 * 125.82272 * 180.13567 * 12 11 10 37 37 H 1.08004 * 126.41507 * 179.76824 * 13 12 11 38 38 H 1.08998 * 109.88021 * 97.22263 * 16 5 4 39 39 H 1.09004 * 109.88163 * 218.38680 * 16 5 4 40 40 H 1.09003 * 109.47500 * 300.00492 * 20 18 17 41 41 H 1.09001 * 109.46727 * 60.00775 * 20 18 17 42 42 H 0.97002 * 119.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7772 -1.2267 5 6 3.4778 -1.2004 -0.7327 6 1 4.1945 -0.3909 -0.8716 7 7 3.9291 -2.4132 -1.4194 8 6 5.2449 -2.6957 -1.4934 9 8 6.0574 -1.9436 -0.9905 10 6 5.6990 -3.9163 -2.1839 11 7 4.9235 -4.8096 -2.7610 12 6 5.6810 -5.7713 -3.2834 13 6 6.9791 -5.4823 -3.0204 14 7 6.9972 -4.3179 -2.3297 15 1 7.7837 -3.8554 -2.0005 16 6 3.2493 -1.4758 0.7684 17 7 2.0430 -0.7371 1.1691 18 6 1.4971 -0.7336 2.4014 19 8 0.4963 -0.0841 2.6195 20 6 2.1302 -1.5368 3.5083 21 16 1.1712 -1.3288 5.0292 22 6 2.1077 -2.3445 6.1227 23 1 2.9858 -2.8597 5.7623 24 6 1.7170 -2.4826 7.4474 25 7 0.6470 -1.8542 7.8868 26 14 2.7102 -3.5588 8.6069 27 1 3.7626 -2.7412 9.2619 28 1 1.8123 -4.1314 9.6420 29 1 3.3452 -4.6596 7.8387 30 1 -0.3635 0.5016 0.8968 31 1 -0.3633 0.5258 -0.8830 32 1 -0.3633 -1.0276 -0.0141 33 1 2.1399 -0.1287 -2.0999 34 1 1.4512 -1.6496 -1.4389 35 1 3.2810 -3.0130 -1.8208 36 1 5.3224 -6.6369 -3.8206 37 1 7.8379 -6.0705 -3.3083 38 1 3.1013 -2.5434 0.9311 39 1 4.1064 -1.1263 1.3441 40 1 2.1451 -2.5906 3.2298 41 1 3.1504 -1.1896 3.6713 42 1 0.3741 -1.9504 8.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680497360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:47 Heat of formation + Delta-G solvation = -32.059398 kcal Electronic energy + Delta-G solvation = -26145.486480 eV Core-core repulsion = 22251.824933 eV Total energy + Delta-G solvation = -3893.661547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.20172 -41.52455 -40.36503 -38.52162 -35.60042 -34.61609 -33.69093 -33.41693 -31.70850 -30.36458 -29.98064 -27.69687 -26.84282 -25.29642 -23.41966 -22.52772 -22.23107 -21.54629 -20.42966 -19.89684 -19.44839 -18.16907 -17.79498 -17.42615 -16.92490 -16.86306 -16.66692 -16.48847 -15.97769 -15.41212 -15.23289 -14.94017 -14.89116 -14.70816 -14.57351 -14.47810 -14.32353 -13.95423 -13.48748 -13.24765 -13.16876 -13.08188 -12.91595 -12.67893 -12.60128 -12.20767 -11.90730 -11.75578 -11.53638 -11.36727 -11.32370 -11.17085 -10.75136 -10.36245 -10.32894 -9.74503 -9.56667 -8.70322 -8.37566 -6.15997 0.28396 1.19412 1.38252 1.40003 1.46758 1.53858 1.56098 1.60809 2.03870 2.24448 2.31636 2.50603 2.96271 3.13049 3.26162 3.38716 3.43326 3.81531 3.93380 4.01078 4.06891 4.19524 4.20234 4.36576 4.37747 4.41851 4.48978 4.55770 4.65809 4.75441 4.82237 4.90082 4.97933 5.14505 5.25739 5.27322 5.38254 5.57990 5.61459 6.12490 6.16627 6.26549 6.32360 6.76759 6.97459 7.03414 7.11431 8.71758 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.002758 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.253196 B =10151.480152 C =12303.415577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 H 0.087 0.913 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.113 0.887 7 N -0.684 5.684 8 C 0.609 3.391 9 O -0.568 6.568 10 C 0.106 3.894 11 N -0.459 5.459 12 C -0.051 4.051 13 C 0.005 3.995 14 N -0.521 5.521 15 H 0.438 0.562 16 C 0.085 3.915 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.549 6.549 20 C -0.125 4.125 21 S -0.140 6.140 22 C -0.549 4.549 23 H 0.078 0.922 24 C 0.015 3.985 25 N -0.909 5.909 26 Si 0.999 3.001 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.260 1.260 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.423 0.577 36 H 0.202 0.798 37 H 0.231 0.769 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 -6.254 -29.245 32.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.105 0.895 4 C -0.154 4.154 5 C 0.041 3.959 6 H 0.131 0.869 7 N -0.336 5.336 8 C 0.394 3.606 9 O -0.446 6.446 10 C -0.153 4.153 11 N -0.183 5.183 12 C -0.204 4.204 13 C -0.136 4.136 14 N -0.123 5.123 15 H 0.279 0.721 16 C -0.039 4.039 17 N -0.348 5.348 18 C 0.339 3.661 19 O -0.426 6.426 20 C -0.276 4.276 21 S 0.087 5.913 22 C -0.697 4.697 23 H 0.096 0.904 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.820 3.180 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.184 1.184 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.115 0.885 35 H 0.261 0.739 36 H 0.219 0.781 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.644 -4.610 -28.363 31.005 hybrid contribution 2.365 -1.407 0.979 2.921 sum 14.009 -6.017 -27.384 31.342 Atomic orbital electron populations 1.22090 0.93954 1.02337 1.03449 1.22138 0.95459 0.96256 0.83431 0.89495 1.23164 0.92840 1.02023 0.97360 1.21910 0.97843 0.87330 0.88838 0.86902 1.45461 1.06443 1.25580 1.56104 1.16669 0.83214 0.82486 0.78190 1.90855 1.54322 1.50382 1.49019 1.22359 0.82351 1.00106 1.10497 1.70141 1.34271 1.02916 1.10941 1.23106 0.89952 1.01121 1.06241 1.23786 1.02238 0.88841 0.98704 1.43075 1.08974 1.19618 1.40664 0.72056 1.22560 0.87094 0.97194 0.97045 1.48413 1.28502 1.49206 1.08682 1.19587 0.83340 0.80983 0.82226 1.90646 1.26118 1.44088 1.81792 1.23349 1.03739 1.03065 0.97426 1.85453 1.39156 1.65054 1.01647 1.23173 1.15052 1.33703 0.97757 0.90376 1.26121 0.96439 0.97327 0.99114 1.70177 1.25032 1.42236 1.17116 0.84957 0.77793 0.78047 0.77203 1.19233 1.19950 1.18408 0.92810 0.88959 0.93303 0.85602 0.88476 0.73896 0.78102 0.75274 0.90909 0.91098 0.88285 0.88339 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.71 71.98 0.63 -3.21 16 2 C 0.13 2.76 3.77 45.47 0.17 2.93 16 3 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.12 -1.48 6.13 31.99 0.20 -1.28 16 5 C 0.15 2.41 3.27 46.18 0.15 2.56 16 6 H 0.11 1.91 7.62 -2.39 -0.02 1.89 16 7 N -0.68 -10.95 5.12 -440.19 -2.25 -13.20 16 8 C 0.61 12.22 7.81 86.66 0.68 12.90 16 9 O -0.57 -14.38 16.78 -4.04 -0.07 -14.44 16 10 C 0.11 1.88 7.95 136.28 1.08 2.96 16 11 N -0.46 -8.00 10.89 -189.52 -2.06 -10.06 16 12 C -0.05 -0.58 11.85 83.88 0.99 0.41 16 13 C 0.00 0.03 12.00 83.52 1.00 1.04 16 14 N -0.52 -6.08 6.14 -188.02 -1.16 -7.24 16 15 H 0.44 3.63 8.96 -92.71 -0.83 2.79 16 16 C 0.09 1.97 6.24 86.73 0.54 2.51 16 17 N -0.61 -17.48 3.24 -788.15 -2.56 -20.03 16 18 C 0.55 21.80 7.65 87.66 0.67 22.47 16 19 O -0.55 -25.71 13.52 -3.04 -0.04 -25.75 16 20 C -0.12 -5.39 5.35 71.24 0.38 -5.01 16 21 S -0.14 -8.05 20.57 -56.49 -1.16 -9.21 16 22 C -0.55 -32.38 9.50 67.95 0.65 -31.74 16 23 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 24 C 0.01 0.87 5.49 84.86 0.47 1.34 16 25 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 26 Si 1.00 44.59 29.55 68.60 2.03 46.61 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 30 H 0.05 1.76 5.89 -2.39 -0.01 1.74 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.12 7.93 -2.39 -0.02 1.10 16 35 H 0.42 5.67 8.23 -92.71 -0.76 4.91 16 36 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.23 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.07 1.72 8.03 -2.39 -0.02 1.70 16 39 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 41 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -85.11 371.96 0.10 -85.01 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.52 Total: 16.80 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.61 Total: 7.88 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -7.74 Total: -106.91 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.11 Total: -40.19 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -85.11 0.10 -85.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.951 kcal (2) G-P(sol) polarization free energy of solvation -85.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds