Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.87098 * 2 1 4 4 C 1.54331 * 109.88336 * 238.98783 * 2 1 3 5 5 C 1.55161 * 102.93879 * 218.23213 * 4 2 1 6 6 H 1.09003 * 110.99619 * 153.61464 * 5 4 2 7 7 N 1.46499 * 111.00561 * 277.42706 * 5 4 2 8 8 C 1.34777 * 119.99665 * 205.28118 * 7 5 4 9 9 O 1.21573 * 120.00276 * 359.72080 * 8 7 5 10 10 C 1.47716 * 119.99706 * 179.72381 * 8 7 5 11 11 C 1.41501 * 126.51672 * 179.70800 * 10 8 7 12 12 C 1.35359 * 105.50052 * 179.90216 * 11 10 8 13 13 N 1.35033 * 107.23279 * 0.36128 * 12 11 10 14 14 H 0.97003 * 124.88954 * 179.77025 * 13 12 11 15 15 N 1.28471 * 110.22604 * 359.76021 * 13 12 11 16 16 C 1.54908 * 101.58051 * 35.50396 * 5 4 2 17 17 N 1.47024 * 110.01272 * 121.10202 * 2 1 3 18 18 C 1.34777 * 125.64726 * 298.47471 * 17 2 1 19 19 O 1.21284 * 119.99940 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00107 * 180.02562 * 18 17 2 21 21 S 1.80995 * 109.47154 * 180.02562 * 20 18 17 22 22 C 1.76204 * 100.00057 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99921 * 359.97438 * 22 21 20 24 24 C 1.38795 * 119.99880 * 180.02562 * 22 21 20 25 25 N 1.31630 * 120.00502 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47403 * 90.00045 * 26 24 22 28 28 H 1.48498 * 109.47367 * 209.99918 * 26 24 22 29 29 H 1.48500 * 109.47128 * 329.99985 * 26 24 22 30 30 H 1.09001 * 109.47132 * 181.01031 * 1 2 3 31 31 H 1.08995 * 109.47811 * 301.01168 * 1 2 3 32 32 H 1.08997 * 109.47295 * 61.01862 * 1 2 3 33 33 H 1.08996 * 110.71849 * 99.86948 * 4 2 1 34 34 H 1.08994 * 110.71855 * 336.59573 * 4 2 1 35 35 H 0.97001 * 119.99790 * 24.99831 * 7 5 4 36 36 H 1.07995 * 127.24572 * 0.02562 * 11 10 8 37 37 H 1.08006 * 126.38510 * 180.15702 * 12 11 10 38 38 H 1.09000 * 110.36726 * 81.83024 * 16 5 4 39 39 H 1.09006 * 110.36281 * 204.14682 * 16 5 4 40 40 H 1.09001 * 109.46950 * 300.00112 * 20 18 17 41 41 H 1.08992 * 109.47009 * 60.00279 * 20 18 17 42 42 H 0.96998 * 120.00573 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 6 3.2900 -1.5100 -0.6955 6 1 3.4892 -2.4057 -1.2839 7 7 4.4679 -0.6400 -0.6535 8 6 5.7035 -1.1755 -0.7096 9 8 5.8406 -2.3808 -0.7899 10 6 6.8911 -0.2978 -0.6735 11 6 8.2441 -0.7097 -0.7178 12 6 8.9714 0.4305 -0.6614 13 7 8.0989 1.4579 -0.5798 14 1 8.3475 2.3938 -0.5233 15 7 6.8921 1.0174 -0.5880 16 6 2.8195 -1.8769 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.8113 -0.3628 2.4651 19 8 1.1447 0.6182 2.7189 20 6 2.3914 -1.1895 3.5836 21 16 1.9194 -0.4676 5.1749 22 6 2.7075 -1.6003 6.2706 23 1 3.2701 -2.4325 5.8740 24 6 2.6044 -1.4236 7.6434 25 7 1.9183 -0.4096 8.1268 26 14 3.4404 -2.6241 8.8050 27 1 4.8175 -2.1518 9.0979 28 1 2.6669 -2.7093 10.0697 29 1 3.5016 -3.9654 8.1708 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5294 0.8807 32 1 -0.3634 0.4979 -0.8989 33 1 2.3503 -0.0431 -2.0212 34 1 1.3062 -1.4456 -1.6187 35 1 4.3585 0.3217 -0.5895 36 1 8.6177 -1.7207 -0.7847 37 1 10.0488 0.5046 -0.6754 38 1 2.1956 -2.7704 0.7105 39 1 3.6779 -2.0298 1.3884 40 1 2.0083 -2.2079 3.5192 41 1 3.4779 -1.2040 3.4989 42 1 1.8465 -0.2859 9.0862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680500487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = 8.664375 kcal Electronic energy + Delta-G solvation = -26551.151140 eV Core-core repulsion = 22659.255509 eV Total energy + Delta-G solvation = -3891.895632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.93433 -40.46523 -39.11401 -37.26850 -34.22551 -32.40302 -32.25601 -32.13447 -31.14047 -29.92225 -28.65838 -25.98350 -25.45705 -24.70284 -22.52979 -22.04039 -21.02863 -20.36382 -18.92795 -18.88620 -17.63908 -17.35141 -17.00457 -16.34492 -16.03482 -15.34511 -14.95885 -14.78025 -14.67335 -14.34530 -14.23543 -13.99163 -13.77593 -13.64422 -13.38313 -12.98567 -12.77928 -12.54499 -12.44650 -12.08926 -11.85608 -11.60327 -11.37960 -11.28467 -11.03859 -10.99034 -10.84414 -10.73109 -10.37277 -9.79836 -9.78510 -9.54215 -9.47128 -9.23168 -9.03885 -8.43815 -8.20417 -6.47021 -6.19022 -3.89223 1.28387 1.82306 2.48889 2.92584 2.94461 3.11473 3.19585 3.24555 3.28385 3.32867 3.64787 4.12685 4.20702 4.24631 4.35639 4.51819 4.73116 4.87537 4.99623 5.10467 5.16127 5.23533 5.28712 5.33156 5.40767 5.46189 5.54583 5.57267 5.65735 5.69469 5.70896 5.94262 6.01787 6.05378 6.19301 6.24388 6.30015 6.56817 6.60096 7.20067 7.53692 7.62680 7.71241 7.98190 8.38391 8.61397 9.26454 10.88430 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.003286 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.042925 B = 8519.798002 C =10446.740712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.131 3.869 6 H 0.116 0.884 7 N -0.706 5.706 8 C 0.608 3.392 9 O -0.530 6.530 10 C -0.015 4.015 11 C -0.178 4.178 12 C -0.015 4.015 13 N -0.381 5.381 14 H 0.447 0.553 15 N -0.257 5.257 16 C 0.090 3.910 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.514 6.514 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.409 0.591 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.352 1.406 -24.389 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.172 4.172 5 C 0.026 3.974 6 H 0.133 0.867 7 N -0.357 5.357 8 C 0.393 3.607 9 O -0.404 6.404 10 C -0.176 4.176 11 C -0.206 4.206 12 C -0.159 4.159 13 N -0.095 5.095 14 H 0.292 0.708 15 N -0.094 5.094 16 C -0.035 4.035 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.388 6.388 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.682 4.682 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.504 5.504 26 Si 0.744 3.256 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.182 0.818 37 H 0.203 0.797 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.634 2.966 -23.740 25.435 hybrid contribution 2.108 -1.602 0.577 2.710 sum 10.743 1.363 -23.163 25.569 Atomic orbital electron populations 1.22130 0.94533 1.02417 1.02970 1.21496 0.94994 0.96285 0.84250 0.90817 1.23093 0.96667 1.00283 0.97203 1.22128 0.84325 0.94713 0.96275 0.86663 1.45731 1.04631 1.11174 1.74195 1.16870 0.81486 0.86506 0.75854 1.90810 1.85961 1.13717 1.49927 1.21935 0.95177 0.89991 1.10489 1.21825 0.91052 0.99993 1.07753 1.22983 0.98020 0.87387 1.07542 1.43376 1.02959 1.10476 1.52717 0.70807 1.73544 1.04597 1.12679 1.18538 1.22743 0.95979 0.89410 0.95363 1.48587 1.53660 1.28761 1.04857 1.19968 0.79751 0.84943 0.81367 1.90689 1.38554 1.27034 1.82521 1.23516 1.03575 1.02677 1.00005 1.85338 1.69345 1.38068 0.90615 1.22871 1.38000 1.14244 0.93114 0.90958 1.24978 0.95234 0.95995 0.97312 1.70018 1.38504 1.28309 1.13545 0.86178 0.79195 0.80628 0.79585 1.20293 1.20743 1.19638 0.92458 0.90753 0.92023 0.89337 0.88619 0.75562 0.81839 0.79670 0.90160 0.89886 0.89348 0.89507 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.15 0.34 -1.55 16 2 C 0.13 1.53 3.44 -66.95 -0.23 1.30 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.05 6.07 -24.89 -0.15 -1.20 16 5 C 0.13 1.26 3.43 -65.78 -0.23 1.03 16 6 H 0.12 1.05 7.53 -51.93 -0.39 0.66 16 7 N -0.71 -7.46 5.18 -52.71 -0.27 -7.73 16 8 C 0.61 7.60 7.83 -12.39 -0.10 7.51 16 9 O -0.53 -7.91 16.56 5.30 0.09 -7.82 16 10 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 11 C -0.18 -1.67 10.81 -39.37 -0.43 -2.09 16 12 C -0.02 -0.09 12.02 -17.17 -0.21 -0.30 16 13 N -0.38 -2.55 6.83 30.47 0.21 -2.35 16 14 H 0.45 1.34 8.96 -190.44 -1.71 -0.36 16 15 N -0.26 -2.61 11.92 33.42 0.40 -2.21 16 16 C 0.09 1.07 6.38 -2.53 -0.02 1.06 16 17 N -0.62 -9.01 3.07 -163.02 -0.50 -9.51 16 18 C 0.55 10.82 7.66 -10.99 -0.08 10.74 16 19 O -0.51 -11.84 14.91 5.55 0.08 -11.76 16 20 C -0.15 -3.16 5.16 36.00 0.19 -2.97 16 21 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 22 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 23 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 24 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 25 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 26 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.61 7.85 -51.93 -0.41 0.21 16 35 H 0.41 4.10 8.39 -40.82 -0.34 3.76 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.19 0.40 8.06 -52.48 -0.42 -0.03 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 40 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 41 H 0.09 1.79 7.85 -51.92 -0.41 1.38 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -38.42 373.24 -9.11 -47.53 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.93 Total: 1.59 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.30 Total: -0.47 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.57 Total: -47.60 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.17 Total: -19.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.42 -9.11 -47.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680500487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.193 kcal (2) G-P(sol) polarization free energy of solvation -38.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds