Wall clock time and date at job start Tue Mar 31 2020 20:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.87748 * 2 1 4 4 C 1.54327 * 109.88045 * 238.98229 * 2 1 3 5 5 H 1.08991 * 110.72082 * 99.69674 * 4 2 1 6 6 N 1.46500 * 110.72280 * 336.59629 * 4 2 1 7 7 C 1.34772 * 120.00383 * 157.44067 * 6 4 2 8 8 O 1.21281 * 119.99720 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00401 * 180.02562 * 7 6 4 10 10 S 1.81005 * 109.47415 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99931 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00293 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99843 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99846 * 359.71985 * 13 11 10 15 15 Si 1.86795 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47071 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47211 * 119.99794 * 15 13 11 18 18 H 1.48493 * 109.47327 * 239.99662 * 15 13 11 19 19 C 1.55162 * 103.10130 * 218.15090 * 4 2 1 20 20 C 1.55385 * 101.36551 * 35.49290 * 19 4 2 21 21 N 1.47022 * 110.01131 * 121.10060 * 2 1 3 22 22 C 1.34776 * 125.64290 * 298.39101 * 21 2 1 23 23 O 1.21571 * 120.00593 * 0.02562 * 22 21 2 24 24 C 1.47715 * 119.99807 * 180.02562 * 22 21 2 25 25 C 1.41507 * 126.51823 * 179.71035 * 24 22 21 26 26 C 1.35362 * 105.50213 * 179.90162 * 25 24 22 27 27 N 1.35037 * 107.22706 * 0.35896 * 26 25 24 28 28 H 0.97003 * 124.87907 * 179.76556 * 27 26 25 29 29 N 1.28464 * 110.23187 * 359.76242 * 27 26 25 30 30 H 1.08999 * 109.47465 * 181.01741 * 1 2 3 31 31 H 1.09000 * 109.46737 * 301.02081 * 1 2 3 32 32 H 1.08995 * 109.46782 * 61.01762 * 1 2 3 33 33 H 0.97003 * 119.99680 * 337.44694 * 6 4 2 34 34 H 1.09002 * 109.47362 * 59.99907 * 9 7 6 35 35 H 1.09005 * 109.46865 * 300.00021 * 9 7 6 36 36 H 0.97000 * 120.00210 * 180.02562 * 14 13 11 37 37 H 1.08994 * 111.00495 * 153.66779 * 19 4 2 38 38 H 1.09002 * 110.99713 * 277.51563 * 19 4 2 39 39 H 1.09006 * 110.34479 * 204.16878 * 20 19 4 40 40 H 1.09001 * 110.44322 * 81.92369 * 20 19 4 41 41 H 1.08003 * 127.24755 * 0.02562 * 25 24 22 42 42 H 1.07999 * 126.38366 * 180.15993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 2.3475 -0.0435 -2.0223 6 7 1.0486 -1.6859 -1.7476 7 6 1.0904 -2.0937 -3.0314 8 8 1.9614 -1.6846 -3.7696 9 6 0.0550 -3.0581 -3.5498 10 16 0.3781 -3.4094 -5.2958 11 6 -0.9410 -4.5282 -5.6319 12 1 -1.6380 -4.7918 -4.8502 13 6 -1.0837 -5.0716 -6.9012 14 7 -0.2368 -4.7468 -7.8552 15 14 -2.4825 -6.2571 -7.2579 16 1 -3.2919 -6.4518 -6.0283 17 1 -3.3415 -5.6999 -8.3335 18 1 -1.9257 -7.5624 -7.6953 19 6 3.2920 -1.5101 -0.6998 20 6 2.8195 -1.8770 0.7342 21 7 2.0332 -0.7136 1.1829 22 6 1.8126 -0.3618 2.4651 23 8 1.1458 0.6224 2.7194 24 6 2.3810 -1.1722 3.5615 25 6 2.2422 -0.9280 4.9484 26 6 2.9242 -1.9239 5.5611 27 7 3.4438 -2.7078 4.5921 28 1 3.9848 -3.4977 4.7482 29 7 3.1187 -2.2569 3.4340 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3633 0.5296 0.8807 32 1 -0.3633 0.4979 -0.8989 33 1 0.3521 -2.0133 -1.1571 34 1 -0.9365 -2.6174 -3.4457 35 1 0.1026 -3.9846 -2.9775 36 1 -0.3366 -5.1263 -8.7423 37 1 3.4905 -2.4045 -1.2902 38 1 4.1678 -0.8618 -0.6691 39 1 3.6778 -2.0299 1.3886 40 1 2.1960 -2.7709 0.7126 41 1 1.7037 -0.1186 5.4190 42 1 3.0349 -2.0634 6.6263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701720413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:41 Heat of formation + Delta-G solvation = -7.283316 kcal Electronic energy + Delta-G solvation = -26378.968917 eV Core-core repulsion = 22486.381742 eV Total energy + Delta-G solvation = -3892.587175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.57556 -41.62557 -40.26170 -38.54564 -35.22376 -34.57207 -33.18839 -32.36378 -32.13890 -31.44300 -30.04429 -27.67016 -26.77387 -25.61268 -23.32728 -22.78626 -22.29563 -21.17069 -20.03688 -19.86514 -19.20548 -18.24397 -17.92217 -17.65729 -16.88847 -16.86650 -16.45765 -16.40579 -16.01287 -15.68981 -15.07644 -14.88676 -14.62127 -14.52344 -14.45980 -14.38765 -14.13350 -14.02274 -13.63707 -13.31668 -13.14600 -12.91654 -12.66472 -12.63033 -12.57124 -12.26697 -12.04951 -11.73006 -11.66126 -11.22161 -11.14960 -10.93892 -10.45708 -10.25525 -10.14937 -10.13830 -9.75472 -8.64217 -8.34024 -6.10981 0.51145 1.24492 1.27542 1.41550 1.47205 1.58119 1.61823 1.70737 2.19932 2.23794 2.28860 2.33999 3.00196 3.20052 3.32949 3.43137 3.55488 3.92072 3.97115 4.01685 4.12144 4.18119 4.24395 4.29041 4.34358 4.53246 4.57121 4.66773 4.76448 4.78055 4.87240 4.90834 5.00469 5.01395 5.17225 5.25985 5.41955 5.43363 5.47986 6.17285 6.21035 6.35869 6.46417 6.81441 7.07779 7.08242 7.22991 8.75242 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.002183 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.112402 B =12823.922429 C =13197.978583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.094 0.906 4 C 0.140 3.860 5 H 0.102 0.898 6 N -0.704 5.704 7 C 0.541 3.459 8 O -0.557 6.557 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.013 3.987 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.139 4.139 20 C 0.110 3.890 21 N -0.601 5.601 22 C 0.613 3.387 23 O -0.566 6.566 24 C -0.041 4.041 25 C -0.209 4.209 26 C 0.015 3.985 27 N -0.368 5.368 28 H 0.464 0.536 29 N -0.268 5.268 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.162 0.838 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.063 4.055 30.829 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.112 0.888 4 C 0.034 3.966 5 H 0.120 0.880 6 N -0.360 5.360 7 C 0.327 3.673 8 O -0.435 6.435 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.693 4.693 12 H 0.099 0.901 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.178 4.178 20 C -0.012 4.012 21 N -0.334 5.334 22 C 0.402 3.598 23 O -0.444 6.444 24 C -0.200 4.200 25 C -0.237 4.237 26 C -0.130 4.130 27 N -0.085 5.085 28 H 0.312 0.688 29 N -0.106 5.106 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.251 0.749 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.179 0.821 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.628 4.599 28.852 30.464 hybrid contribution -2.031 -1.017 1.069 2.510 sum 6.598 3.582 29.921 30.849 Atomic orbital electron populations 1.22033 0.93846 1.02535 1.03200 1.21805 0.95519 0.96549 0.83042 0.88827 1.21893 0.88444 0.91478 0.94776 0.88011 1.45890 1.32406 1.47320 1.10388 1.19950 0.84707 0.80671 0.81958 1.90699 1.38009 1.57163 1.57601 1.23379 1.01652 1.01870 1.01360 1.85531 1.41594 1.59537 1.05152 1.23233 1.15123 1.30952 0.99991 0.90056 1.26106 0.99713 0.98547 0.94807 1.70184 1.37628 1.43693 1.03196 0.84923 0.77250 0.77254 0.78633 1.18155 1.20012 1.19905 1.23293 0.97613 1.01839 0.95062 1.22578 0.96136 0.87430 0.95027 1.48425 1.51793 1.28957 1.04213 1.16832 0.79313 0.83064 0.80627 1.90766 1.41651 1.28358 1.83578 1.21793 1.05714 0.97498 0.94998 1.22030 1.06861 1.03516 0.91261 1.23553 0.98950 0.92334 0.98167 1.43600 1.38555 1.24037 1.02314 0.68776 1.73563 1.15665 1.12183 1.09227 0.91815 0.92016 0.90424 0.74922 0.87436 0.87342 0.92016 0.89858 0.88415 0.88027 0.91082 0.82071 0.75267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.48 71.98 0.61 -2.58 16 2 C 0.13 2.74 3.42 45.34 0.16 2.89 16 3 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.14 3.07 3.13 46.18 0.14 3.21 16 5 H 0.10 2.52 7.62 -2.39 -0.02 2.50 16 6 N -0.70 -17.22 4.56 -436.92 -1.99 -19.21 16 7 C 0.54 18.95 7.85 87.66 0.69 19.64 16 8 O -0.56 -24.35 15.55 -3.03 -0.05 -24.40 16 9 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 10 S -0.15 -7.93 20.57 -56.49 -1.16 -9.10 16 11 C -0.55 -30.89 9.50 67.96 0.65 -30.24 16 12 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 13 C 0.01 0.74 5.49 84.86 0.47 1.20 16 14 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 15 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C -0.14 -2.68 6.81 32.16 0.22 -2.47 16 20 C 0.11 1.97 6.15 87.02 0.53 2.51 16 21 N -0.60 -12.50 3.07 -790.61 -2.43 -14.93 16 22 C 0.61 14.90 7.65 86.75 0.66 15.57 16 23 O -0.57 -16.95 15.98 -3.94 -0.06 -17.01 16 24 C -0.04 -0.81 6.97 42.46 0.30 -0.51 16 25 C -0.21 -3.08 10.81 22.41 0.24 -2.84 16 26 C 0.01 0.09 12.02 83.54 1.00 1.10 16 27 N -0.37 -2.70 6.83 -57.51 -0.39 -3.09 16 28 H 0.46 -0.22 8.96 -219.99 -1.97 -2.19 16 29 N -0.27 -4.15 9.35 -48.17 -0.45 -4.60 16 30 H 0.06 1.18 6.21 -2.39 -0.01 1.17 16 31 H 0.06 1.44 6.91 -2.39 -0.02 1.42 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 8.26 6.39 -92.71 -0.59 7.67 16 34 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 1.72 6.20 -2.38 -0.01 1.70 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.23 -0.80 8.06 -2.91 -0.02 -0.83 16 Total: -1.00 -83.19 365.94 0.40 -82.79 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -1.48 Total: 16.50 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 6.11 Total: 2.85 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.97 Total: -97.16 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.11 Total: -41.41 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -83.19 0.40 -82.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701720413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.502 kcal (2) G-P(sol) polarization free energy of solvation -83.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds