Wall clock time and date at job start Tue Mar 31 2020 20:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00020 * 2 1 4 4 C 1.54323 * 109.88045 * 238.90518 * 2 1 3 5 5 H 1.09003 * 110.72279 * 336.93003 * 4 2 1 6 6 N 1.46506 * 110.72190 * 100.02786 * 4 2 1 7 7 C 1.34768 * 120.00142 * 202.55880 * 6 4 2 8 8 O 1.21279 * 120.00177 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00164 * 179.97438 * 7 6 4 10 10 S 1.80994 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.76195 * 100.00323 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99420 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00618 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99497 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47449 * 89.99581 * 15 13 11 17 17 H 1.48502 * 109.46868 * 210.00001 * 15 13 11 18 18 H 1.48503 * 109.46669 * 329.99383 * 15 13 11 19 19 C 1.55153 * 103.10236 * 218.47982 * 4 2 1 20 20 C 1.54902 * 101.58367 * 35.41454 * 19 4 2 21 21 N 1.47320 * 110.06529 * 121.17549 * 2 1 3 22 22 C 1.34773 * 125.61415 * 298.32418 * 21 2 1 23 23 O 1.21577 * 119.99991 * 359.78801 * 22 21 2 24 24 C 1.47711 * 120.00527 * 179.79774 * 22 21 2 25 25 C 1.41498 * 126.52514 * 179.97438 * 24 22 21 26 26 C 1.35361 * 105.50718 * 179.97438 * 25 24 22 27 27 N 1.35041 * 107.22623 * 0.02562 * 26 25 24 28 28 H 0.96994 * 124.88438 * 180.02562 * 27 26 25 29 29 N 1.28467 * 110.23076 * 359.72165 * 27 26 25 30 30 H 1.08996 * 109.47477 * 181.09159 * 1 2 3 31 31 H 1.09007 * 109.47158 * 301.09509 * 1 2 3 32 32 H 1.09003 * 109.47012 * 61.08908 * 1 2 3 33 33 H 0.97002 * 119.99472 * 22.55677 * 6 4 2 34 34 H 1.09000 * 109.46823 * 300.00381 * 9 7 6 35 35 H 1.09001 * 109.46865 * 60.00185 * 9 7 6 36 36 H 0.96997 * 119.99421 * 179.97438 * 14 13 11 37 37 H 1.09001 * 111.00844 * 153.48781 * 19 4 2 38 38 H 1.09003 * 111.00424 * 277.34027 * 19 4 2 39 39 H 1.08995 * 110.37027 * 81.82691 * 20 19 4 40 40 H 1.08997 * 110.37057 * 204.15602 * 20 19 4 41 41 H 1.08008 * 127.24610 * 0.02562 * 25 24 22 42 42 H 1.07992 * 126.38964 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3038 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2876 7 6 2.5055 -0.2025 -3.5740 8 8 2.2183 -1.3438 -3.8668 9 6 2.9170 0.7704 -4.6489 10 16 2.8852 -0.0587 -6.2575 11 6 3.3940 1.2701 -7.2967 12 1 3.6139 2.2369 -6.8684 13 6 3.5112 1.0747 -8.6659 14 7 3.2427 -0.1035 -9.1879 15 14 4.0513 2.4832 -9.7675 16 1 5.5311 2.4760 -9.8907 17 1 3.4418 2.3218 -11.1120 18 1 3.6101 3.7717 -9.1756 19 6 3.2868 -1.5178 -0.6959 20 6 2.8160 -1.8832 0.7339 21 7 2.0354 -0.7163 1.1839 22 6 1.8164 -0.3651 2.4665 23 8 1.1539 0.6218 2.7219 24 6 2.3813 -1.1790 3.5621 25 6 2.2393 -0.9387 4.9493 26 6 2.9203 -1.9360 5.5609 27 7 3.4363 -2.7212 4.5910 28 1 3.9728 -3.5143 4.7461 29 7 3.1092 -2.2704 3.4334 30 1 -0.3634 -1.0274 0.0196 31 1 -0.3634 0.5308 0.8801 32 1 -0.3633 0.4968 -0.8996 33 1 2.6847 1.1091 -2.0534 34 1 2.2253 1.6126 -4.6608 35 1 3.9253 1.1312 -4.4456 36 1 3.3242 -0.2399 -10.1448 37 1 3.4810 -2.4145 -1.2843 38 1 4.1663 -0.8745 -0.6652 39 1 2.1879 -2.7736 0.7106 40 1 3.6742 -2.0403 1.3874 41 1 1.7003 -0.1302 5.4209 42 1 3.0310 -2.0769 6.6258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701720433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:48 Heat of formation + Delta-G solvation = 13.993796 kcal Electronic energy + Delta-G solvation = -26037.598261 eV Core-core repulsion = 22145.933731 eV Total energy + Delta-G solvation = -3891.664531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.05720 -40.48884 -39.06880 -37.47815 -34.17664 -32.53515 -32.42521 -31.54563 -31.32336 -30.64798 -28.85715 -25.62926 -25.29028 -24.85278 -22.50250 -22.19828 -21.14023 -20.49441 -19.34481 -18.65004 -17.84337 -17.30790 -16.83080 -16.23932 -15.98045 -15.71779 -15.15309 -14.89883 -14.79951 -14.30377 -14.12339 -14.01885 -13.79970 -13.56321 -13.33492 -13.25821 -12.86764 -12.62922 -12.48380 -12.27081 -11.96234 -11.77284 -11.33640 -11.20821 -11.06050 -11.02379 -10.88608 -10.75498 -10.33026 -9.87834 -9.81598 -9.65803 -9.44126 -9.07081 -8.97038 -8.86546 -8.24089 -6.50014 -6.21681 -3.92144 1.19151 1.71102 2.30770 2.64643 3.04428 3.07058 3.11924 3.22774 3.28661 3.33193 3.70899 3.93876 4.20521 4.25049 4.38941 4.44452 4.74321 4.85088 4.98293 5.01687 5.11587 5.13653 5.18865 5.19475 5.30370 5.43816 5.54098 5.58893 5.67507 5.79314 5.86273 5.88607 5.89701 5.99381 6.08828 6.14142 6.15608 6.50270 6.59493 7.18304 7.37588 7.59857 7.65556 7.90523 8.35435 8.57140 9.23854 10.85724 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.001925 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.597623 B =14541.883821 C =14813.614035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.084 0.916 4 C 0.141 3.859 5 H 0.108 0.892 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.148 4.148 20 C 0.104 3.896 21 N -0.601 5.601 22 C 0.618 3.382 23 O -0.530 6.530 24 C -0.009 4.009 25 C -0.179 4.179 26 C -0.014 4.014 27 N -0.384 5.384 28 H 0.447 0.553 29 N -0.255 5.255 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.163 0.837 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -4.055 30.856 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.102 0.898 4 C 0.034 3.966 5 H 0.125 0.875 6 N -0.384 5.384 7 C 0.322 3.678 8 O -0.388 6.388 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.187 4.187 20 C -0.019 4.019 21 N -0.335 5.335 22 C 0.405 3.595 23 O -0.405 6.405 24 C -0.169 4.169 25 C -0.207 4.207 26 C -0.159 4.159 27 N -0.098 5.098 28 H 0.291 0.709 29 N -0.092 5.092 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.181 0.819 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.052 -6.177 29.593 30.231 hybrid contribution 0.840 2.653 0.539 2.834 sum 0.788 -3.524 30.132 30.348 Atomic orbital electron populations 1.22136 0.93683 1.02806 1.03399 1.21779 0.95288 0.96350 0.83694 0.89847 1.21925 0.96934 0.91381 0.86315 0.87450 1.45957 1.71578 1.14533 1.06337 1.20313 0.76285 0.88871 0.82302 1.90702 1.46756 1.19711 1.81653 1.23537 1.04196 1.01887 1.00821 1.85381 1.89124 1.16947 0.91817 1.22870 1.53001 0.98273 0.94228 0.90909 1.24993 0.94910 0.96556 0.97141 1.70020 1.45654 1.21838 1.12778 0.86167 0.78776 0.81257 0.79298 1.20287 1.20755 1.19687 1.23286 0.98412 1.02096 0.94892 1.22512 0.96181 0.87980 0.95255 1.48348 1.52164 1.28670 1.04347 1.16483 0.79705 0.83326 0.79969 1.90803 1.40112 1.26657 1.82943 1.21896 1.04097 0.96254 0.94693 1.21814 1.05150 1.01981 0.91783 1.22973 1.01727 0.94579 0.96580 1.43465 1.39628 1.23729 1.03012 0.70869 1.73664 1.15584 1.12341 1.07598 0.92158 0.90913 0.91019 0.76591 0.89109 0.89155 0.92192 0.88843 0.90151 0.90970 0.88622 0.81893 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.11 37.16 0.34 -1.42 16 2 C 0.13 1.43 3.22 -66.79 -0.21 1.22 16 3 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 4 C 0.14 1.64 2.79 -66.10 -0.18 1.46 16 5 H 0.11 1.42 7.33 -51.93 -0.38 1.04 16 6 N -0.73 -9.37 5.19 -52.03 -0.27 -9.64 16 7 C 0.54 9.58 7.85 -10.99 -0.09 9.49 16 8 O -0.51 -11.16 15.55 5.56 0.09 -11.07 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 15 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.15 -1.54 6.77 -24.59 -0.17 -1.70 16 20 C 0.10 0.98 6.15 -2.53 -0.02 0.96 16 21 N -0.60 -6.58 3.08 -163.95 -0.50 -7.08 16 22 C 0.62 7.58 7.65 -12.39 -0.09 7.49 16 23 O -0.53 -7.83 16.00 5.30 0.08 -7.74 16 24 C -0.01 -0.09 6.97 -82.76 -0.58 -0.66 16 25 C -0.18 -1.42 10.81 -39.37 -0.43 -1.84 16 26 C -0.01 -0.06 12.02 -17.17 -0.21 -0.27 16 27 N -0.38 -1.86 6.83 30.47 0.21 -1.65 16 28 H 0.45 0.48 8.96 -190.45 -1.71 -1.22 16 29 N -0.25 -2.14 9.35 33.42 0.31 -1.83 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 6.93 -51.92 -0.36 0.51 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.10 8.34 -40.82 -0.34 3.76 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.86 6.21 -51.93 -0.32 0.54 16 41 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.19 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -37.37 369.84 -9.08 -46.46 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.86 Total: 0.72 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.21 Total: -0.97 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.48 Total: -45.52 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.17 Total: -18.81 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.37 -9.08 -46.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701720433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.450 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds