Wall clock time and date at job start Tue Mar 31 2020 21:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 C 1.50698 * 109.47384 * 120.00179 * 2 1 3 5 5 O 1.21276 * 120.00147 * 90.08709 * 4 2 1 6 6 N 1.34779 * 119.99635 * 269.81682 * 4 2 1 7 7 C 1.47069 * 136.05309 * 174.77165 * 6 4 2 8 8 C 1.53755 * 87.88670 * 152.96032 * 7 6 4 9 9 N 1.46497 * 114.39498 * 272.67389 * 8 7 6 10 10 C 1.34779 * 120.00042 * 248.58557 * 9 8 7 11 11 O 1.21287 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99980 * 179.97438 * 10 9 8 13 13 S 1.81004 * 109.47244 * 179.97438 * 12 10 9 14 14 C 1.76192 * 100.00025 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.38807 * 119.99758 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00223 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99558 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47281 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46881 * 120.00111 * 18 16 14 21 21 H 1.48505 * 109.46561 * 239.99743 * 18 16 14 22 22 C 1.47062 * 136.05988 * 355.13937 * 6 4 2 23 23 N 1.46501 * 109.47194 * 240.00460 * 2 1 3 24 24 C 1.34949 * 126.03427 * 324.99665 * 23 2 1 25 25 C 1.35319 * 107.74735 * 179.97438 * 24 23 2 26 26 C 1.39870 * 107.91560 * 359.97438 * 25 24 23 27 27 N 1.30833 * 108.20572 * 359.74554 * 26 25 24 28 28 H 1.08997 * 109.46961 * 186.27355 * 1 2 3 29 29 H 1.09002 * 109.47059 * 306.27176 * 1 2 3 30 30 H 1.08995 * 109.47150 * 66.26923 * 1 2 3 31 31 H 1.08999 * 113.46823 * 267.69384 * 7 6 4 32 32 H 1.09002 * 113.47133 * 38.12936 * 7 6 4 33 33 H 1.09004 * 114.26675 * 139.78909 * 8 7 6 34 34 H 0.96998 * 119.99814 * 68.58692 * 9 8 7 35 35 H 1.08993 * 109.47389 * 300.00193 * 12 10 9 36 36 H 1.09006 * 109.47055 * 60.00301 * 12 10 9 37 37 H 0.96994 * 120.00487 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.46704 * 321.86332 * 22 6 4 39 39 H 1.08998 * 113.46983 * 92.30611 * 22 6 4 40 40 H 1.08001 * 126.12359 * 359.95532 * 24 23 2 41 41 H 1.08001 * 126.04072 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.89561 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2361 -1.9056 1.1999 6 7 2.2606 -0.0166 2.3631 7 6 2.6441 -0.3421 3.7451 8 6 3.2670 1.0603 3.8422 9 7 4.6566 1.1381 3.3850 10 6 5.6457 1.3681 4.2712 11 8 5.3854 1.5102 5.4472 12 6 7.0752 1.4476 3.8009 13 16 8.1590 1.7645 5.2155 14 6 9.7206 1.8084 4.4007 15 1 9.7768 1.6593 3.3326 16 6 10.8788 2.0336 5.1319 17 7 10.8105 2.2149 6.4339 18 14 12.5345 2.0795 4.2681 19 1 12.3408 1.8486 2.8140 20 1 13.1663 3.4067 4.4793 21 1 13.4126 1.0191 4.8247 22 6 2.2293 1.3983 2.7627 23 7 2.0184 -0.6905 -1.1962 24 6 1.4402 -1.7558 -1.7896 25 6 2.1961 -2.0922 -2.8604 26 6 3.2727 -1.2015 -2.9239 27 7 3.1640 -0.3573 -1.9302 28 1 -0.3633 -1.0215 0.1123 29 1 -0.3633 0.6080 0.8285 30 1 -0.3633 0.4136 -0.9407 31 1 1.7921 -0.4855 4.4097 32 1 3.3739 -1.1486 3.8147 33 1 3.0986 1.5602 4.7961 34 1 4.8648 1.0241 2.4445 35 1 7.3562 0.5049 3.3314 36 1 7.1755 2.2575 3.0783 37 1 11.6197 2.3726 6.9448 38 1 2.6059 2.0745 1.9953 39 1 1.2680 1.7137 3.1683 40 1 0.5364 -2.2513 -1.4673 41 1 2.0024 -2.9047 -3.5449 42 1 4.0563 -1.2072 -3.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704501336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:14 Heat of formation + Delta-G solvation = 59.808410 kcal Electronic energy + Delta-G solvation = -25956.663916 eV Core-core repulsion = 22066.986056 eV Total energy + Delta-G solvation = -3889.677860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67228 -40.91508 -39.17141 -38.01381 -34.95073 -33.61847 -32.44428 -30.69023 -30.21515 -29.68413 -28.47894 -26.61724 -25.51841 -25.05606 -22.56400 -21.33585 -21.13390 -20.47672 -19.33660 -17.99069 -17.82329 -17.65942 -16.84334 -16.27896 -15.90306 -15.76522 -15.09536 -14.88712 -14.81474 -14.62737 -14.41028 -13.90211 -13.85511 -13.55910 -13.32184 -13.22958 -13.13598 -12.90553 -12.80937 -12.55684 -12.40957 -12.15735 -12.05991 -11.37837 -11.07521 -11.03829 -10.96015 -10.77302 -10.45270 -9.83451 -9.66558 -9.60768 -9.25454 -9.11164 -9.06016 -8.83908 -8.27521 -6.52860 -6.23601 -3.94375 1.48950 1.88296 2.10311 2.53411 2.64321 2.85938 2.88805 3.21345 3.26287 3.31322 3.58144 3.70185 3.96558 4.03575 4.18739 4.23293 4.48364 4.55705 4.68873 4.78184 4.82830 4.89063 4.94205 4.98842 5.04851 5.12024 5.22617 5.26253 5.33826 5.36531 5.47428 5.52901 5.71952 5.77274 5.83697 6.10530 6.37532 6.43704 6.65829 7.16943 7.42705 7.51976 7.59125 7.60882 8.34156 8.44495 9.22264 10.83898 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.002345 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.461931 B =11936.695114 C =13522.818975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 H 0.120 0.880 4 C 0.532 3.468 5 O -0.521 6.521 6 N -0.644 5.644 7 C 0.088 3.912 8 C 0.116 3.884 9 N -0.719 5.719 10 C 0.539 3.461 11 O -0.512 6.512 12 C -0.154 4.154 13 S -0.058 6.058 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.085 3.915 23 N -0.363 5.363 24 C 0.075 3.925 25 C -0.276 4.276 26 C 0.051 3.949 27 N -0.296 5.296 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.439 -3.204 -15.525 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.138 0.862 4 C 0.319 3.681 5 O -0.395 6.395 6 N -0.381 5.381 7 C -0.036 4.036 8 C 0.008 3.992 9 N -0.372 5.372 10 C 0.325 3.675 11 O -0.386 6.386 12 C -0.305 4.305 13 S 0.168 5.832 14 C -0.683 4.683 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.038 4.038 23 N -0.146 5.146 24 C -0.071 4.071 25 C -0.306 4.306 26 C -0.136 4.136 27 N -0.116 5.116 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -25.214 -2.631 -12.905 28.447 hybrid contribution 1.061 -1.038 -2.783 3.154 sum -24.153 -3.669 -15.688 29.034 Atomic orbital electron populations 1.22086 0.90113 1.04489 1.04757 1.20975 0.96357 0.97374 0.80857 0.86172 1.20255 0.77644 0.87074 0.83109 1.90777 1.50916 1.14566 1.83247 1.49707 1.68744 1.10160 1.09455 1.23722 0.99449 0.99735 0.80704 1.22095 0.82001 0.95983 0.99085 1.45640 1.04824 1.75212 1.11541 1.20379 0.86651 0.74635 0.85802 1.90708 1.83741 1.47424 1.16684 1.23539 0.94595 1.05234 1.07115 1.85358 0.98527 1.93465 1.05825 1.22905 0.92114 1.56937 0.96370 0.90835 1.24996 0.99179 0.94502 0.94907 1.70017 1.29198 1.45450 1.05630 0.86108 0.81990 0.77919 0.79447 1.19581 1.20537 1.20548 1.23618 0.99972 0.83278 0.96968 1.48275 1.20261 1.24732 1.21288 1.22428 0.99804 0.90455 0.94380 1.21502 0.99244 1.06385 1.03427 1.23929 0.99007 0.93640 0.96997 1.77403 1.02174 1.24396 1.07589 0.90723 0.89285 0.89854 0.88294 0.89604 0.85089 0.76390 0.89095 0.89008 0.92210 0.89432 0.87660 0.81281 0.83407 0.79840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.68 37.16 0.32 -0.39 16 2 C 0.15 1.23 3.61 -69.08 -0.25 0.98 16 3 H 0.12 0.82 7.77 -51.93 -0.40 0.42 16 4 C 0.53 5.80 7.25 -10.99 -0.08 5.72 16 5 O -0.52 -8.01 17.19 5.56 0.10 -7.92 16 6 N -0.64 -5.66 3.69 -185.07 -0.68 -6.34 16 7 C 0.09 0.80 8.45 -8.37 -0.07 0.73 16 8 C 0.12 1.07 4.61 -67.68 -0.31 0.76 16 9 N -0.72 -8.89 5.40 -53.48 -0.29 -9.18 16 10 C 0.54 9.45 7.85 -10.99 -0.09 9.36 16 11 O -0.51 -10.75 15.46 5.55 0.09 -10.66 16 12 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 14 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 18 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.09 0.49 7.99 -8.51 -0.07 0.42 16 23 N -0.36 -3.87 3.28 -55.99 -0.18 -4.05 16 24 C 0.07 0.70 10.28 -17.22 -0.18 0.53 16 25 C -0.28 -2.55 10.80 -40.01 -0.43 -2.98 16 26 C 0.05 0.52 12.02 -17.37 -0.21 0.31 16 27 N -0.30 -3.67 12.58 30.62 0.39 -3.29 16 28 H 0.07 0.37 7.49 -51.93 -0.39 -0.02 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.13 1.24 7.45 -51.93 -0.39 0.86 16 34 H 0.40 4.46 8.76 -40.82 -0.36 4.10 16 35 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 36 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 0.43 8.02 -51.93 -0.42 0.01 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.17 1.13 7.44 -52.49 -0.39 0.74 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -39.24 381.10 -7.98 -47.22 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.69 Total: 1.44 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.94 Total: -0.33 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.04 Total: -48.18 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.24 -7.98 -47.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704501336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.027 kcal (2) G-P(sol) polarization free energy of solvation -39.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds