Wall clock time and date at job start Tue Mar 31 2020 21:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 C 1.50698 * 109.47384 * 120.00179 * 2 1 3 5 5 O 1.21276 * 120.00147 * 90.08709 * 4 2 1 6 6 N 1.34779 * 119.99635 * 269.81682 * 4 2 1 7 7 C 1.47069 * 136.05309 * 174.77165 * 6 4 2 8 8 C 1.53755 * 87.88670 * 152.96032 * 7 6 4 9 9 N 1.46497 * 114.39498 * 272.67389 * 8 7 6 10 10 C 1.34779 * 120.00042 * 248.58557 * 9 8 7 11 11 O 1.21287 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99980 * 179.97438 * 10 9 8 13 13 S 1.81004 * 109.47244 * 179.97438 * 12 10 9 14 14 C 1.76192 * 100.00025 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.38807 * 119.99758 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00223 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99558 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47281 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46881 * 120.00111 * 18 16 14 21 21 H 1.48505 * 109.46561 * 239.99743 * 18 16 14 22 22 C 1.47062 * 136.05988 * 355.13937 * 6 4 2 23 23 N 1.46501 * 109.47194 * 240.00460 * 2 1 3 24 24 C 1.34949 * 126.03427 * 324.99665 * 23 2 1 25 25 C 1.35319 * 107.74735 * 179.97438 * 24 23 2 26 26 C 1.39870 * 107.91560 * 359.97438 * 25 24 23 27 27 N 1.30833 * 108.20572 * 359.74554 * 26 25 24 28 28 H 1.08997 * 109.46961 * 186.27355 * 1 2 3 29 29 H 1.09002 * 109.47059 * 306.27176 * 1 2 3 30 30 H 1.08995 * 109.47150 * 66.26923 * 1 2 3 31 31 H 1.08999 * 113.46823 * 267.69384 * 7 6 4 32 32 H 1.09002 * 113.47133 * 38.12936 * 7 6 4 33 33 H 1.09004 * 114.26675 * 139.78909 * 8 7 6 34 34 H 0.96998 * 119.99814 * 68.58692 * 9 8 7 35 35 H 1.08993 * 109.47389 * 300.00193 * 12 10 9 36 36 H 1.09006 * 109.47055 * 60.00301 * 12 10 9 37 37 H 0.96994 * 120.00487 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.46704 * 321.86332 * 22 6 4 39 39 H 1.08998 * 113.46983 * 92.30611 * 22 6 4 40 40 H 1.08001 * 126.12359 * 359.95532 * 24 23 2 41 41 H 1.08001 * 126.04072 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.89561 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2361 -1.9056 1.1999 6 7 2.2606 -0.0166 2.3631 7 6 2.6441 -0.3421 3.7451 8 6 3.2670 1.0603 3.8422 9 7 4.6566 1.1381 3.3850 10 6 5.6457 1.3681 4.2712 11 8 5.3854 1.5102 5.4472 12 6 7.0752 1.4476 3.8009 13 16 8.1590 1.7645 5.2155 14 6 9.7206 1.8084 4.4007 15 1 9.7768 1.6593 3.3326 16 6 10.8788 2.0336 5.1319 17 7 10.8105 2.2149 6.4339 18 14 12.5345 2.0795 4.2681 19 1 12.3408 1.8486 2.8140 20 1 13.1663 3.4067 4.4793 21 1 13.4126 1.0191 4.8247 22 6 2.2293 1.3983 2.7627 23 7 2.0184 -0.6905 -1.1962 24 6 1.4402 -1.7558 -1.7896 25 6 2.1961 -2.0922 -2.8604 26 6 3.2727 -1.2015 -2.9239 27 7 3.1640 -0.3573 -1.9302 28 1 -0.3633 -1.0215 0.1123 29 1 -0.3633 0.6080 0.8285 30 1 -0.3633 0.4136 -0.9407 31 1 1.7921 -0.4855 4.4097 32 1 3.3739 -1.1486 3.8147 33 1 3.0986 1.5602 4.7961 34 1 4.8648 1.0241 2.4445 35 1 7.3562 0.5049 3.3314 36 1 7.1755 2.2575 3.0783 37 1 11.6197 2.3726 6.9448 38 1 2.6059 2.0745 1.9953 39 1 1.2680 1.7137 3.1683 40 1 0.5364 -2.2513 -1.4673 41 1 2.0024 -2.9047 -3.5449 42 1 4.0563 -1.2072 -3.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704501336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:13 Heat of formation + Delta-G solvation = 29.846320 kcal Electronic energy + Delta-G solvation = -25957.963170 eV Core-core repulsion = 22066.986056 eV Total energy + Delta-G solvation = -3890.977114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38535 -41.72690 -40.34020 -39.01372 -35.60497 -34.80905 -34.60029 -31.63952 -31.03672 -30.55439 -29.49729 -27.68836 -27.22229 -25.65925 -23.44055 -22.19797 -21.99247 -21.42217 -20.09253 -19.87570 -18.56856 -18.39416 -18.05730 -17.30882 -16.90256 -16.79147 -16.74922 -16.41972 -15.92135 -15.51895 -15.37404 -14.97010 -14.80162 -14.49317 -14.45031 -14.29819 -13.97731 -13.72484 -13.46021 -13.44206 -13.35615 -13.18632 -13.08099 -12.93183 -12.69673 -12.62427 -12.19151 -11.74388 -11.70237 -11.25837 -11.17835 -11.08125 -10.41277 -10.32112 -10.24867 -9.94796 -9.55005 -8.68579 -8.37343 -6.14873 0.77329 1.18593 1.23250 1.39476 1.41987 1.43646 1.49658 1.55805 1.85197 1.94013 2.14196 2.24950 2.96891 3.06516 3.26751 3.29596 3.48547 3.74277 3.76968 3.87397 3.93695 4.10717 4.22962 4.24438 4.26132 4.46437 4.51072 4.55107 4.55933 4.61353 4.66875 4.68269 4.76927 4.84532 5.01931 5.12658 5.40047 5.41619 5.69660 6.02395 6.17705 6.31876 6.48187 6.69902 6.83627 7.04472 7.12112 8.72021 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.002345 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.461931 B =11936.695114 C =13522.818975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.150 3.850 3 H 0.135 0.865 4 C 0.528 3.472 5 O -0.577 6.577 6 N -0.643 5.643 7 C 0.086 3.914 8 C 0.102 3.898 9 N -0.699 5.699 10 C 0.544 3.456 11 O -0.552 6.552 12 C -0.134 4.134 13 S -0.140 6.140 14 C -0.548 4.548 15 H 0.079 0.921 16 C 0.015 3.985 17 N -0.909 5.909 18 Si 0.997 3.003 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.274 1.274 22 C 0.105 3.895 23 N -0.371 5.371 24 C 0.067 3.933 25 C -0.286 4.286 26 C 0.040 3.960 27 N -0.338 5.338 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.052 0.948 33 H 0.133 0.867 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.272 0.728 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.192 0.808 41 H 0.169 0.831 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.109 -2.490 -17.486 32.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.152 0.848 4 C 0.317 3.683 5 O -0.456 6.456 6 N -0.378 5.378 7 C -0.038 4.038 8 C -0.005 4.005 9 N -0.351 5.351 10 C 0.330 3.670 11 O -0.429 6.429 12 C -0.285 4.285 13 S 0.087 5.913 14 C -0.696 4.696 15 H 0.097 0.903 16 C -0.190 4.190 17 N -0.545 5.545 18 Si 0.819 3.181 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.017 4.017 23 N -0.154 5.154 24 C -0.078 4.078 25 C -0.315 4.315 26 C -0.145 4.145 27 N -0.159 5.159 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.186 0.814 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.930 -1.886 -14.895 30.832 hybrid contribution 1.466 -1.307 -2.187 2.940 sum -25.463 -3.193 -17.082 30.828 Atomic orbital electron populations 1.22130 0.87251 1.04885 1.06426 1.21264 0.98421 0.97143 0.78763 0.84764 1.20806 0.76873 0.86581 0.84073 1.90746 1.53573 1.17037 1.84235 1.49786 1.67582 1.11633 1.08825 1.23807 0.99892 0.98273 0.81823 1.22380 0.80596 0.96671 1.00832 1.45397 1.05507 1.73127 1.11094 1.19916 0.86574 0.74813 0.85691 1.90697 1.84106 1.49790 1.18294 1.23389 0.94839 1.06248 1.04065 1.85446 1.00713 1.93939 1.11225 1.23223 0.92739 1.56987 0.96668 0.90271 1.26098 1.03545 0.93745 0.95632 1.70165 1.30520 1.46433 1.07426 0.84926 0.76363 0.78233 0.78561 1.18356 1.19631 1.19941 1.23810 1.00542 0.81633 0.95724 1.48527 1.19931 1.25236 1.21740 1.22926 1.00488 0.90169 0.94258 1.21869 0.98931 1.06807 1.03927 1.24417 0.99764 0.93398 0.96967 1.77308 1.03695 1.26011 1.08892 0.91206 0.86692 0.88779 0.85256 0.92966 0.84900 0.75411 0.88215 0.87137 0.91901 0.87762 0.83114 0.79088 0.81361 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.68 71.98 0.62 -0.28 16 2 C 0.15 2.12 3.61 44.25 0.16 2.28 16 3 H 0.13 1.44 7.77 -2.39 -0.02 1.42 16 4 C 0.53 10.76 7.25 87.66 0.64 11.40 16 5 O -0.58 -17.79 17.19 -3.02 -0.05 -17.85 16 6 N -0.64 -9.79 3.69 -857.83 -3.16 -12.95 16 7 C 0.09 1.44 8.45 83.27 0.70 2.15 16 8 C 0.10 1.66 4.61 45.55 0.21 1.87 16 9 N -0.70 -16.38 5.40 -441.51 -2.38 -18.76 16 10 C 0.54 18.99 7.85 87.66 0.69 19.68 16 11 O -0.55 -23.53 15.46 -3.05 -0.05 -23.58 16 12 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 13 S -0.14 -7.74 20.57 -56.49 -1.16 -8.90 16 14 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 15 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 16 C 0.01 0.85 5.49 84.86 0.47 1.31 16 17 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 18 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C 0.10 0.77 7.99 83.18 0.66 1.44 16 23 N -0.37 -7.49 3.28 -331.05 -1.09 -8.58 16 24 C 0.07 1.18 10.28 83.54 0.86 2.04 16 25 C -0.29 -4.99 10.80 21.99 0.24 -4.75 16 26 C 0.04 0.80 12.02 85.24 1.02 1.83 16 27 N -0.34 -8.21 12.58 -57.02 -0.72 -8.92 16 28 H 0.07 0.52 7.49 -2.39 -0.02 0.50 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 2.25 7.45 -2.39 -0.02 2.24 16 34 H 0.41 8.42 8.76 -92.71 -0.81 7.60 16 35 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.10 0.54 8.02 -2.39 -0.02 0.52 16 39 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.19 2.26 7.44 -2.91 -0.02 2.24 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -90.19 381.10 1.30 -88.89 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.24 Total: 16.86 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.36 Total: 3.13 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -7.06 Total: -104.65 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.42 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.90 kcal Total: -90.19 1.30 -88.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704501336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.738 kcal (2) G-P(sol) polarization free energy of solvation -90.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds