Wall clock time and date at job start Tue Mar 31 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30458 * 2 1 4 4 C 1.54386 * 110.34576 * 237.71001 * 2 1 3 5 5 N 1.48149 * 104.61714 * 264.99490 * 4 2 1 6 6 C 1.34780 * 127.83608 * 140.43545 * 5 4 2 7 7 O 1.21566 * 119.99922 * 180.02562 * 6 5 4 8 8 C 1.47692 * 119.99763 * 0.02749 * 6 5 4 9 9 C 1.39487 * 122.10298 * 180.02562 * 8 6 5 10 10 C 1.34998 * 111.68904 * 179.97438 * 9 8 6 11 11 S 1.71763 * 105.44631 * 359.97438 * 10 9 8 12 12 N 1.30606 * 122.10780 * 359.70993 * 8 6 5 13 13 C 1.48144 * 104.32583 * 320.41503 * 5 4 2 14 14 C 1.54284 * 110.34266 * 122.17101 * 2 1 3 15 15 H 1.09000 * 110.34726 * 237.85222 * 14 2 1 16 16 N 1.46901 * 110.34086 * 0.02562 * 14 2 1 17 17 C 1.46902 * 110.99844 * 204.99647 * 16 14 2 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 89.99599 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99936 * 25 23 21 29 29 H 1.08996 * 109.47403 * 297.82464 * 1 2 3 30 30 H 1.08999 * 109.47026 * 57.83164 * 1 2 3 31 31 H 1.09004 * 109.46909 * 177.82677 * 1 2 3 32 32 H 1.08998 * 110.40771 * 23.78253 * 4 2 1 33 33 H 1.09004 * 110.40683 * 146.21145 * 4 2 1 34 34 H 1.08002 * 124.15460 * 359.93741 * 9 8 6 35 35 H 1.07993 * 127.27822 * 179.97438 * 10 9 8 36 36 H 1.09003 * 110.40543 * 280.80455 * 13 5 4 37 37 H 1.08994 * 110.40720 * 158.36766 * 13 5 4 38 38 H 1.00902 * 111.00235 * 81.04884 * 16 14 2 39 39 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 40 40 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 41 41 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 42 42 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1445 -0.7204 6 6 2.0778 -3.3119 -1.3513 7 8 2.3367 -4.3640 -0.8000 8 6 1.5047 -3.3128 -2.7125 9 6 1.2421 -4.4946 -3.4054 10 6 0.7211 -4.2515 -4.6269 11 16 0.6251 -2.5410 -4.7511 12 7 1.2060 -2.2074 -3.3407 13 6 2.8802 -1.9416 0.6335 14 6 2.0663 -0.7702 1.2245 15 1 2.7080 -0.1264 1.8260 16 7 0.9523 -1.2807 2.0348 17 6 1.3632 -1.4748 3.4317 18 6 0.1969 -1.9973 4.2304 19 8 -0.8714 -2.1895 3.6890 20 7 0.3425 -2.2567 5.5449 21 6 -0.7169 -2.7374 6.2703 22 1 -1.6681 -2.9086 5.7882 23 6 -0.5670 -3.0044 7.6256 24 7 -1.5823 -3.4656 8.3207 25 14 1.0780 -2.7077 8.4596 26 1 1.1248 -1.3183 8.9817 27 1 1.2431 -3.6645 9.5830 28 1 2.1738 -2.9042 7.4767 29 1 -0.3634 0.4797 0.9088 30 1 -0.3633 0.5471 -0.8699 31 1 -0.3633 -1.0270 -0.0390 32 1 1.3224 -0.7890 -2.0198 33 1 2.9950 -0.3257 -1.5789 34 1 1.4329 -5.4826 -3.0133 35 1 0.4269 -4.9787 -5.3690 36 1 3.9354 -1.6763 0.5683 37 1 2.7494 -2.8387 1.2385 38 1 0.5829 -2.1347 1.6446 39 1 1.6918 -0.5231 3.8494 40 1 2.1827 -2.1921 3.4731 41 1 1.1968 -2.1032 5.9779 42 1 -1.4777 -3.6516 9.2670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724939969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:07 Heat of formation + Delta-G solvation = -25.081136 kcal Electronic energy + Delta-G solvation = -26856.867308 eV Core-core repulsion = 22963.508361 eV Total energy + Delta-G solvation = -3893.358947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76469 -40.49727 -39.86073 -38.77086 -36.20527 -35.51734 -33.77796 -33.28543 -32.57326 -30.34319 -28.53834 -27.26374 -27.03651 -25.48481 -23.99298 -22.20568 -21.34337 -20.73665 -20.55998 -20.23729 -19.42460 -18.41063 -17.66471 -17.54840 -16.91798 -16.88755 -16.46280 -16.06120 -15.68164 -15.49475 -15.08444 -14.98833 -14.71250 -14.51715 -14.37964 -14.23683 -14.11371 -14.04135 -13.51023 -13.37541 -13.22065 -12.89456 -12.85539 -12.43068 -12.26205 -12.14734 -12.03097 -11.98951 -11.74474 -11.52704 -11.46584 -10.98370 -10.86410 -10.45890 -10.26434 -10.04665 -9.72809 -9.24371 -8.42836 -6.03990 -0.46833 0.51530 0.68757 0.77421 1.29089 1.34743 1.43653 1.84758 1.94686 2.07868 2.21995 2.70412 3.13254 3.30695 3.43045 3.59030 3.76177 3.82044 4.10126 4.13370 4.29947 4.34975 4.37435 4.42868 4.51158 4.54458 4.59789 4.65522 4.79513 4.82020 4.87103 4.95509 5.11366 5.20509 5.31466 5.41195 5.51519 5.63201 5.89977 6.07223 6.21833 6.37914 6.58305 6.86491 6.89972 7.38033 7.95326 8.75079 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.002447 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.596831 B =11438.374094 C =11755.079704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 H 0.120 0.880 4 C 0.096 3.904 5 N -0.603 5.603 6 C 0.596 3.404 7 O -0.578 6.578 8 C 0.029 3.971 9 C -0.161 4.161 10 C -0.265 4.265 11 S 0.535 5.465 12 N -0.535 5.535 13 C 0.072 3.928 14 C 0.078 3.922 15 H 0.129 0.871 16 N -0.665 5.665 17 C 0.059 3.941 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.232 1.232 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.221 0.779 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.335 0.665 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.390 0.610 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.822 8.163 -28.820 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 H 0.138 0.862 4 C -0.027 4.027 5 N -0.335 5.335 6 C 0.382 3.618 7 O -0.458 6.458 8 C -0.143 4.143 9 C -0.193 4.193 10 C -0.413 4.413 11 S 0.690 5.310 12 N -0.372 5.372 13 C -0.052 4.052 14 C -0.033 4.033 15 H 0.146 0.854 16 N -0.296 5.296 17 C -0.074 4.074 18 C 0.235 3.765 19 O -0.501 6.501 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.070 0.930 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.178 1.178 27 H -0.201 1.201 28 H -0.156 1.156 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.181 0.819 35 H 0.238 0.762 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.226 0.774 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.501 9.908 -29.352 33.793 hybrid contribution 1.017 -3.119 2.023 3.855 sum 14.518 6.788 -27.328 31.681 Atomic orbital electron populations 1.21374 0.94838 0.99935 1.00993 1.22231 0.96340 1.00172 0.92116 0.86230 1.23134 1.02859 0.78864 0.97821 1.48770 1.60786 1.06380 1.17528 1.17314 0.77817 0.82445 0.84252 1.90789 1.55403 1.32024 1.67590 1.20865 1.07233 0.89129 0.97090 1.21445 1.02885 0.99911 0.95038 1.27584 1.05457 1.06834 1.01467 1.80323 1.46180 0.95500 1.08952 1.72202 1.21555 1.31400 1.12057 1.23326 0.99544 0.99293 0.83012 1.22824 0.90629 0.95054 0.94774 0.85359 1.60339 1.32157 1.36572 1.00502 1.21750 0.93214 1.02874 0.89524 1.21054 0.90936 0.82087 0.82415 1.90548 1.31150 1.57466 1.70932 1.42025 1.12344 1.60129 1.08762 1.18994 0.92380 1.42003 0.92508 0.92970 1.26154 1.03151 0.95993 0.96205 1.69812 1.33626 1.44883 1.09280 0.85330 0.77400 0.79549 0.79002 1.17798 1.20058 1.15551 0.92932 0.92405 0.96093 0.87149 0.88969 0.81920 0.76227 0.87716 0.92369 0.84651 0.85596 0.91093 0.77406 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 8.10 71.98 0.58 -2.12 16 2 C -0.09 -1.56 3.66 -9.89 -0.04 -1.60 16 3 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.10 1.70 6.14 86.53 0.53 2.23 16 5 N -0.60 -14.65 3.32 -811.52 -2.69 -17.34 16 6 C 0.60 17.65 7.91 86.74 0.69 18.34 16 7 O -0.58 -21.42 16.92 -3.92 -0.07 -21.49 16 8 C 0.03 0.68 6.62 42.13 0.28 0.96 16 9 C -0.16 -3.13 9.98 21.83 0.22 -2.92 16 10 C -0.26 -2.93 11.41 67.07 0.77 -2.17 16 11 S 0.53 5.57 23.20 -56.49 -1.31 4.26 16 12 N -0.54 -10.01 7.89 -75.32 -0.59 -10.61 16 13 C 0.07 1.57 6.49 86.54 0.56 2.13 16 14 C 0.08 1.56 3.37 45.82 0.15 1.71 16 15 H 0.13 1.80 7.82 -2.39 -0.02 1.78 16 16 N -0.67 -20.02 4.10 -490.88 -2.01 -22.04 16 17 C 0.06 1.81 6.02 85.56 0.51 2.32 16 18 C 0.45 20.92 7.82 87.66 0.69 21.60 16 19 O -0.62 -35.72 15.78 -3.07 -0.05 -35.76 16 20 N -0.59 -28.73 5.09 -306.98 -1.56 -30.29 16 21 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16 22 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 23 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 24 N -0.94 -57.70 13.96 21.66 0.30 -57.40 16 25 Si 0.97 39.64 27.74 68.60 1.90 41.55 16 26 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 29 H 0.05 1.46 7.84 -2.39 -0.02 1.44 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.02 0.61 7.57 -2.38 -0.02 0.59 16 32 H 0.11 2.11 5.01 -2.39 -0.01 2.10 16 33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.16 3.33 7.99 -2.91 -0.02 3.31 16 35 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.60 7.73 -2.39 -0.02 1.58 16 38 H 0.34 12.32 7.74 -89.69 -0.69 11.62 16 39 H 0.13 3.03 8.07 -2.38 -0.02 3.02 16 40 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 41 H 0.39 15.61 5.76 -92.71 -0.53 15.07 16 42 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -87.89 361.87 -0.03 -87.92 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.21 Total: 40.23 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.26 Total: 20.97 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -6.56 Total: -137.67 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -0.11 Total: -57.25 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.90 Total: 41.55 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.31 Total: 4.26 kcal Total: -87.89 -0.03 -87.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724939969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.835 kcal (2) G-P(sol) polarization free energy of solvation -87.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds