Wall clock time and date at job start Tue Mar 31 2020 20:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47412 * 2 1 4 4 N 1.46493 * 109.47264 * 120.00305 * 2 1 3 5 5 C 1.36939 * 120.00205 * 274.99983 * 4 2 1 6 6 H 1.07998 * 119.99658 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00044 * 180.27246 * 5 4 2 8 8 N 1.31620 * 119.99890 * 179.72392 * 7 5 4 9 9 Si 1.86797 * 119.99907 * 359.72588 * 7 5 4 10 10 H 1.48499 * 109.47420 * 89.99863 * 9 7 5 11 11 H 1.48504 * 109.47096 * 209.99813 * 9 7 5 12 12 H 1.48504 * 109.47176 * 329.99664 * 9 7 5 13 13 C 1.53000 * 109.46666 * 240.00228 * 2 1 3 14 14 H 1.09002 * 109.51295 * 64.90399 * 13 2 1 15 15 C 1.53293 * 109.51152 * 185.00111 * 13 2 1 16 16 N 1.47155 * 108.38833 * 172.22828 * 15 13 2 17 17 C 1.34769 * 120.98538 * 129.44193 * 16 15 13 18 18 O 1.21566 * 120.00038 * 354.38895 * 17 16 15 19 19 C 1.47766 * 120.00120 * 174.38582 * 17 16 15 20 20 C 1.39625 * 120.15460 * 314.11938 * 19 17 16 21 21 C 1.37903 * 119.86266 * 179.71883 * 20 19 17 22 22 C 1.38421 * 120.18302 * 0.55405 * 21 20 19 23 23 C 1.38271 * 120.31751 * 359.71825 * 22 21 20 24 24 C 1.38156 * 120.12574 * 0.02562 * 23 22 21 25 25 Cl 1.73606 * 120.08561 * 179.97438 * 24 23 22 26 26 C 1.47152 * 118.02995 * 309.46583 * 16 15 13 27 27 C 1.53290 * 108.38576 * 50.53426 * 26 16 15 28 28 O 1.42956 * 109.22678 * 307.69624 * 27 26 16 29 29 H 1.08994 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46623 * 300.00019 * 1 2 3 31 31 H 1.09000 * 109.46810 * 59.99209 * 1 2 3 32 32 H 0.97004 * 119.99926 * 94.99574 * 4 2 1 33 33 H 0.96998 * 119.99825 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.68647 * 291.94788 * 15 13 2 35 35 H 1.08998 * 109.68232 * 52.50051 * 15 13 2 36 36 H 1.07999 * 120.07151 * 359.97438 * 20 19 17 37 37 H 1.07997 * 119.90711 * 180.27173 * 21 20 19 38 38 H 1.07998 * 119.84014 * 179.74114 * 22 21 20 39 39 H 1.07998 * 119.93347 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.67686 * 170.25946 * 26 16 15 41 41 H 1.08999 * 109.67918 * 290.80885 * 26 16 15 42 42 H 1.09000 * 109.51168 * 67.62287 * 27 26 16 43 43 H 1.09006 * 109.50888 * 187.77048 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6173 -0.6607 3.5076 8 7 2.7482 -0.0028 4.6401 9 14 3.0615 -2.4731 3.4236 10 1 4.4925 -2.6154 3.0532 11 1 2.8283 -3.1019 4.7486 12 1 2.2169 -3.1430 2.4023 13 6 2.0399 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1375 15 6 3.5677 -0.8318 -1.1890 16 7 4.0154 -1.6875 -2.2993 17 6 4.9958 -1.2866 -3.1325 18 8 5.4538 -0.1646 -3.0368 19 6 5.5142 -2.2109 -4.1623 20 6 5.8189 -3.5322 -3.8295 21 6 6.2969 -4.3912 -4.7967 22 6 6.4858 -3.9438 -6.0929 23 6 6.1918 -2.6353 -6.4295 24 6 5.7074 -1.7651 -5.4720 25 17 5.3392 -0.1223 -5.8957 26 6 3.3604 -2.9938 -2.4731 27 6 1.8428 -2.7778 -2.4710 28 8 1.4750 -2.0332 -1.3074 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.0757 -0.4591 5.4310 34 1 4.0117 0.1589 -1.2870 35 1 3.8664 -1.2761 -0.2395 36 1 5.6768 -3.8819 -2.8176 37 1 6.5287 -5.4145 -4.5410 38 1 6.8644 -4.6201 -6.8450 39 1 6.3412 -2.2930 -7.4428 40 1 3.6672 -3.4348 -3.4216 41 1 3.6383 -3.6557 -1.6530 42 1 1.5525 -2.2246 -3.3641 43 1 1.3377 -3.7437 -2.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725329242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:01 Heat of formation + Delta-G solvation = -28.130113 kcal Electronic energy + Delta-G solvation = -27694.947056 eV Core-core repulsion = 23767.119438 eV Total energy + Delta-G solvation = -3927.827618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83201 -39.33908 -38.11013 -36.71071 -35.69684 -34.68242 -32.39448 -31.81292 -31.16958 -30.38241 -28.91991 -27.81125 -24.66701 -24.02019 -23.27682 -22.97327 -22.10929 -19.92454 -19.67646 -18.02267 -17.60282 -17.07300 -16.53431 -16.16130 -15.96272 -15.41886 -15.08808 -14.90129 -14.49429 -14.30548 -14.22113 -13.98730 -13.82090 -13.55389 -13.10879 -12.86364 -12.52206 -12.38408 -12.25880 -12.02218 -11.90902 -11.73163 -11.62165 -11.34012 -11.19021 -10.94014 -10.86387 -10.59910 -10.30792 -10.07662 -9.96414 -9.88649 -9.55010 -9.43082 -9.16711 -8.94450 -8.50967 -7.23942 -5.74494 -3.09568 0.43037 0.71015 1.81422 2.50950 2.74215 3.21473 3.38881 3.43947 3.46722 3.83287 4.08869 4.29973 4.46268 4.61724 4.66268 4.75257 4.81713 4.88252 4.95644 5.03597 5.15496 5.23363 5.29605 5.36192 5.53053 5.56651 5.58632 5.64410 5.68011 5.69953 5.85202 5.88956 6.13822 6.19373 6.22463 6.30476 6.39957 6.50349 6.73358 7.07022 7.22481 7.31807 8.00011 8.02165 8.44701 9.23690 9.95735 10.16606 11.43901 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.003380 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.653350 B = 8281.429954 C = 8724.857156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.878 3.122 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.074 3.926 14 H 0.061 0.939 15 C 0.086 3.914 16 N -0.607 5.607 17 C 0.557 3.443 18 O -0.513 6.513 19 C -0.118 4.118 20 C -0.078 4.078 21 C -0.121 4.121 22 C -0.089 4.089 23 C -0.118 4.118 24 C 0.006 3.994 25 Cl -0.044 7.044 26 C 0.065 3.935 27 C 0.048 3.952 28 O -0.363 6.363 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.365 0.635 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 -10.942 -25.676 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.088 0.912 4 N -0.387 5.387 5 C -0.371 4.371 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.015 3.985 14 H 0.079 0.921 15 C -0.035 4.035 16 N -0.341 5.341 17 C 0.344 3.656 18 O -0.388 6.388 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.022 4.022 25 Cl -0.015 7.015 26 C -0.058 4.058 27 C -0.030 4.030 28 O -0.281 6.281 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.614 -10.050 -25.309 27.620 hybrid contribution 0.492 -1.256 -0.147 1.357 sum 5.106 -11.306 -25.456 28.318 Atomic orbital electron populations 1.22293 0.97911 1.01626 1.00140 1.20240 0.93048 0.94899 0.83970 0.91233 1.42769 1.79443 1.09584 1.06877 1.19079 1.36697 0.95531 0.85828 0.89121 1.24635 1.01447 0.97307 0.95572 1.69697 1.52529 1.35529 1.00411 0.86622 0.78404 0.87164 0.76939 1.21235 1.21820 1.19912 1.22983 0.91440 0.84109 0.99959 0.92059 1.22476 0.95231 0.97025 0.88797 1.48119 1.36383 1.19118 1.30483 1.18124 0.79905 0.86717 0.80898 1.90841 1.58212 1.19372 1.70421 1.19858 1.04211 0.94997 0.93101 1.21414 0.96645 0.91110 1.00536 1.21231 0.99372 1.00368 0.92971 1.21315 0.97595 0.94986 0.96833 1.21074 0.99968 0.93268 0.99320 1.20994 1.00297 0.87563 0.93322 1.98422 1.92559 1.17449 1.93024 1.22688 0.94579 0.85369 1.03197 1.22902 0.93076 0.97536 0.89526 1.88080 1.71050 1.27267 1.41716 0.92586 0.92319 0.94507 0.80088 0.93109 0.87840 0.88963 0.84310 0.84612 0.84590 0.84286 0.88883 0.90142 0.92962 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.30 37.16 0.35 -2.51 16 2 C 0.19 3.59 2.80 -67.93 -0.19 3.40 16 3 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 4 N -0.74 -17.25 4.05 -53.43 -0.22 -17.47 16 5 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 9 Si 0.88 22.08 27.73 -169.99 -4.71 17.36 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 13 C 0.07 1.20 2.57 -26.58 -0.07 1.13 16 14 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 15 C 0.09 1.43 5.84 -3.53 -0.02 1.41 16 16 N -0.61 -8.54 3.02 -173.42 -0.52 -9.06 16 17 C 0.56 8.27 6.85 -12.37 -0.08 8.18 16 18 O -0.51 -9.38 15.11 5.31 0.08 -9.30 16 19 C -0.12 -1.37 4.91 -104.94 -0.52 -1.89 16 20 C -0.08 -0.69 7.55 -39.19 -0.30 -0.98 16 21 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 22 C -0.09 -0.54 10.04 -39.50 -0.40 -0.93 16 23 C -0.12 -0.92 9.82 -39.60 -0.39 -1.31 16 24 C 0.01 0.07 6.34 -39.07 -0.25 -0.18 16 25 Cl -0.04 -0.54 27.04 -51.86 -1.40 -1.94 16 26 C 0.06 0.70 5.25 -3.54 -0.02 0.68 16 27 C 0.05 0.53 6.98 37.31 0.26 0.79 16 28 O -0.36 -5.65 9.24 -35.23 -0.33 -5.97 16 29 H 0.06 1.03 7.57 -51.93 -0.39 0.63 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.37 8.52 4.94 -40.82 -0.20 8.32 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.10 1.84 7.06 -51.93 -0.37 1.48 16 35 H 0.09 1.73 6.94 -51.93 -0.36 1.37 16 36 H 0.14 1.10 7.13 -52.49 -0.37 0.72 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.09 0.78 5.26 -51.93 -0.27 0.51 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.11 361.46 -8.93 -43.05 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.78 Total: 6.60 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.27 Total: -0.16 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.04 Total: -55.09 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.25 Total: -15.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.40 Total: -1.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.11 -8.93 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725329242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.919 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds