Wall clock time and date at job start Tue Mar 31 2020 20:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47412 * 2 1 4 4 N 1.46493 * 109.47264 * 120.00305 * 2 1 3 5 5 C 1.36939 * 120.00205 * 274.99983 * 4 2 1 6 6 H 1.07998 * 119.99658 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00044 * 180.27246 * 5 4 2 8 8 N 1.31620 * 119.99890 * 179.72392 * 7 5 4 9 9 Si 1.86797 * 119.99907 * 359.72588 * 7 5 4 10 10 H 1.48499 * 109.47420 * 89.99863 * 9 7 5 11 11 H 1.48504 * 109.47096 * 209.99813 * 9 7 5 12 12 H 1.48504 * 109.47176 * 329.99664 * 9 7 5 13 13 C 1.53000 * 109.46666 * 240.00228 * 2 1 3 14 14 H 1.09002 * 109.51295 * 64.90399 * 13 2 1 15 15 C 1.53293 * 109.51152 * 185.00111 * 13 2 1 16 16 N 1.47155 * 108.38833 * 172.22828 * 15 13 2 17 17 C 1.34769 * 120.98538 * 129.44193 * 16 15 13 18 18 O 1.21566 * 120.00038 * 354.38895 * 17 16 15 19 19 C 1.47766 * 120.00120 * 174.38582 * 17 16 15 20 20 C 1.39625 * 120.15460 * 314.11938 * 19 17 16 21 21 C 1.37903 * 119.86266 * 179.71883 * 20 19 17 22 22 C 1.38421 * 120.18302 * 0.55405 * 21 20 19 23 23 C 1.38271 * 120.31751 * 359.71825 * 22 21 20 24 24 C 1.38156 * 120.12574 * 0.02562 * 23 22 21 25 25 Cl 1.73606 * 120.08561 * 179.97438 * 24 23 22 26 26 C 1.47152 * 118.02995 * 309.46583 * 16 15 13 27 27 C 1.53290 * 108.38576 * 50.53426 * 26 16 15 28 28 O 1.42956 * 109.22678 * 307.69624 * 27 26 16 29 29 H 1.08994 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46623 * 300.00019 * 1 2 3 31 31 H 1.09000 * 109.46810 * 59.99209 * 1 2 3 32 32 H 0.97004 * 119.99926 * 94.99574 * 4 2 1 33 33 H 0.96998 * 119.99825 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.68647 * 291.94788 * 15 13 2 35 35 H 1.08998 * 109.68232 * 52.50051 * 15 13 2 36 36 H 1.07999 * 120.07151 * 359.97438 * 20 19 17 37 37 H 1.07997 * 119.90711 * 180.27173 * 21 20 19 38 38 H 1.07998 * 119.84014 * 179.74114 * 22 21 20 39 39 H 1.07998 * 119.93347 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.67686 * 170.25946 * 26 16 15 41 41 H 1.08999 * 109.67918 * 290.80885 * 26 16 15 42 42 H 1.09000 * 109.51168 * 67.62287 * 27 26 16 43 43 H 1.09006 * 109.50888 * 187.77048 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6173 -0.6607 3.5076 8 7 2.7482 -0.0028 4.6401 9 14 3.0615 -2.4731 3.4236 10 1 4.4925 -2.6154 3.0532 11 1 2.8283 -3.1019 4.7486 12 1 2.2169 -3.1430 2.4023 13 6 2.0399 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1375 15 6 3.5677 -0.8318 -1.1890 16 7 4.0154 -1.6875 -2.2993 17 6 4.9958 -1.2866 -3.1325 18 8 5.4538 -0.1646 -3.0368 19 6 5.5142 -2.2109 -4.1623 20 6 5.8189 -3.5322 -3.8295 21 6 6.2969 -4.3912 -4.7967 22 6 6.4858 -3.9438 -6.0929 23 6 6.1918 -2.6353 -6.4295 24 6 5.7074 -1.7651 -5.4720 25 17 5.3392 -0.1223 -5.8957 26 6 3.3604 -2.9938 -2.4731 27 6 1.8428 -2.7778 -2.4710 28 8 1.4750 -2.0332 -1.3074 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.0757 -0.4591 5.4310 34 1 4.0117 0.1589 -1.2870 35 1 3.8664 -1.2761 -0.2395 36 1 5.6768 -3.8819 -2.8176 37 1 6.5287 -5.4145 -4.5410 38 1 6.8644 -4.6201 -6.8450 39 1 6.3412 -2.2930 -7.4428 40 1 3.6672 -3.4348 -3.4216 41 1 3.6383 -3.6557 -1.6530 42 1 1.5525 -2.2246 -3.3641 43 1 1.3377 -3.7437 -2.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725329242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:01 Heat of formation + Delta-G solvation = -50.807838 kcal Electronic energy + Delta-G solvation = -27695.930436 eV Core-core repulsion = 23767.119438 eV Total energy + Delta-G solvation = -3928.810998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82948 -40.27748 -39.15079 -37.52620 -37.25713 -35.88345 -34.24956 -32.75384 -31.79855 -31.78271 -30.50664 -28.93309 -25.95648 -25.06726 -24.88624 -23.62882 -23.20082 -21.39501 -20.71705 -19.84938 -18.73661 -17.95960 -17.58363 -17.21938 -16.96247 -16.53783 -16.40124 -15.96095 -15.82688 -15.51588 -15.18252 -15.00384 -14.80512 -14.71651 -14.51183 -14.33110 -14.09691 -13.71578 -13.41461 -13.12671 -12.98933 -12.85399 -12.60525 -12.51585 -12.48793 -12.45697 -12.09344 -12.03487 -11.81626 -11.77024 -11.58348 -11.17774 -11.01354 -10.96503 -10.10480 -9.83842 -9.67920 -9.27494 -7.99980 -5.32306 -0.25640 0.12185 1.06241 1.37238 1.40204 1.48482 1.51063 1.72226 2.49979 2.55733 2.70878 3.23884 3.32600 3.51601 3.68550 3.72767 3.88239 3.93383 4.00536 4.07494 4.17453 4.25117 4.26690 4.29688 4.39746 4.50474 4.59226 4.70398 4.74445 4.77514 4.80313 4.92810 5.01807 5.04713 5.18407 5.19997 5.24854 5.33028 5.56169 5.71090 5.79423 6.14956 6.18285 6.25512 6.91374 7.10247 7.85550 8.06823 9.21806 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.003380 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.653350 B = 8281.429954 C = 8724.857156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.223 4.223 6 H 0.058 0.942 7 C -0.064 4.064 8 N -0.985 5.985 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.250 1.250 13 C 0.092 3.908 14 H 0.077 0.923 15 C 0.092 3.908 16 N -0.606 5.606 17 C 0.552 3.448 18 O -0.562 6.562 19 C -0.142 4.142 20 C -0.081 4.081 21 C -0.109 4.109 22 C -0.073 4.073 23 C -0.118 4.118 24 C -0.014 4.014 25 Cl -0.072 7.072 26 C 0.063 3.937 27 C 0.042 3.958 28 O -0.381 6.381 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.368 0.632 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -15.155 -28.931 33.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 H 0.077 0.923 4 N -0.387 5.387 5 C -0.354 4.354 6 H 0.076 0.924 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.777 3.223 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.175 1.175 13 C 0.033 3.967 14 H 0.095 0.905 15 C -0.031 4.031 16 N -0.339 5.339 17 C 0.341 3.659 18 O -0.440 6.440 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.136 4.136 24 C -0.041 4.041 25 Cl -0.043 7.043 26 C -0.058 4.058 27 C -0.035 4.035 28 O -0.299 6.299 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.858 -14.300 -28.638 32.377 hybrid contribution 0.424 0.039 0.729 0.844 sum 5.282 -14.260 -27.909 31.784 Atomic orbital electron populations 1.22127 0.96421 1.01678 1.00567 1.20443 0.93986 0.94641 0.83896 0.92290 1.42692 1.79733 1.09580 1.06646 1.19032 1.34574 0.94400 0.87442 0.92399 1.25428 1.02537 1.02298 0.95220 1.69881 1.54783 1.37633 1.01322 0.85483 0.78450 0.81340 0.77052 1.20747 1.22367 1.17469 1.22589 0.90674 0.84985 0.98483 0.90549 1.22139 0.95667 0.96344 0.88947 1.48171 1.36392 1.19934 1.29433 1.18746 0.79298 0.86682 0.81146 1.90803 1.59744 1.21681 1.71816 1.19691 1.06752 0.95732 0.92440 1.21571 0.96750 0.90064 1.01610 1.21647 0.97281 1.01391 0.92376 1.21804 0.95336 0.94397 0.97582 1.21383 0.99042 0.93662 0.99512 1.21226 1.02072 0.86851 0.93982 1.98407 1.92931 1.19798 1.93124 1.22941 0.94075 0.83768 1.05030 1.23237 0.93553 0.98467 0.88222 1.88033 1.71180 1.26719 1.44009 0.92600 0.94592 0.91369 0.79809 0.93489 0.90091 0.91307 0.83657 0.81169 0.80763 0.82528 0.86085 0.89369 0.92135 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.30 71.98 0.67 -4.53 16 2 C 0.18 6.87 2.80 44.99 0.13 6.99 16 3 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 4 N -0.74 -34.78 4.05 -322.95 -1.31 -36.09 16 5 C -0.22 -12.81 10.41 84.03 0.87 -11.94 16 6 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 7 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 8 N -0.99 -64.14 13.97 21.65 0.30 -63.84 16 9 Si 0.95 46.17 27.73 68.60 1.90 48.07 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 13 C 0.09 2.90 2.57 30.69 0.08 2.98 16 14 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.09 3.11 5.84 86.35 0.50 3.62 16 16 N -0.61 -16.64 3.02 -820.85 -2.48 -19.12 16 17 C 0.55 16.45 6.85 86.76 0.59 17.05 16 18 O -0.56 -21.51 15.11 -3.92 -0.06 -21.57 16 19 C -0.14 -3.11 4.91 -20.07 -0.10 -3.21 16 20 C -0.08 -1.16 7.55 22.53 0.17 -0.99 16 21 C -0.11 -0.84 10.03 22.23 0.22 -0.62 16 22 C -0.07 -0.51 10.04 22.32 0.22 -0.28 16 23 C -0.12 -1.45 9.82 22.26 0.22 -1.23 16 24 C -0.01 -0.28 6.34 22.60 0.14 -0.14 16 25 Cl -0.07 -1.78 27.04 -2.72 -0.07 -1.85 16 26 C 0.06 1.18 5.25 86.35 0.45 1.64 16 27 C 0.04 0.80 6.98 72.08 0.50 1.30 16 28 O -0.38 -10.95 9.24 -148.98 -1.38 -12.33 16 29 H 0.05 1.96 7.57 -2.39 -0.02 1.94 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.37 16.87 4.94 -92.71 -0.46 16.41 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.08 3.07 7.06 -2.38 -0.02 3.05 16 35 H 0.07 2.63 6.94 -2.39 -0.02 2.61 16 36 H 0.15 1.82 7.13 -2.91 -0.02 1.80 16 37 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 38 H 0.17 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.12 1.59 5.26 -2.39 -0.01 1.58 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -79.28 361.46 2.58 -76.70 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.52 Total: 22.72 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.15 Total: 7.31 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.48 Total: -119.05 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.44 Total: -33.90 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.07 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -79.28 2.58 -76.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725329242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.892 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds