Wall clock time and date at job start Tue Mar 31 2020 20:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47396 * 2 1 4 4 N 1.46505 * 109.47197 * 120.00524 * 2 1 3 5 5 C 1.36937 * 119.99552 * 274.72245 * 4 2 1 6 6 H 1.08006 * 120.00257 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99769 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47404 * 89.99730 * 9 7 5 11 11 H 1.48496 * 109.47172 * 210.00174 * 9 7 5 12 12 H 1.48505 * 109.46929 * 329.99599 * 9 7 5 13 13 C 1.53005 * 109.47073 * 240.00465 * 2 1 3 14 14 H 1.08997 * 109.51005 * 185.10635 * 13 2 1 15 15 C 1.53284 * 109.51572 * 64.99439 * 13 2 1 16 16 N 1.47150 * 108.38699 * 187.77264 * 15 13 2 17 17 C 1.34780 * 120.98421 * 230.55606 * 16 15 13 18 18 O 1.21560 * 120.00227 * 355.96417 * 17 16 15 19 19 C 1.47764 * 120.00078 * 175.95420 * 17 16 15 20 20 C 1.39636 * 120.15382 * 52.75612 * 19 17 16 21 21 C 1.37897 * 119.86380 * 180.02562 * 20 19 17 22 22 C 1.38413 * 120.18408 * 359.97438 * 21 20 19 23 23 C 1.38268 * 120.32051 * 359.97438 * 22 21 20 24 24 C 1.38160 * 120.12912 * 359.76942 * 23 22 21 25 25 Cl 1.73591 * 120.09408 * 180.27359 * 24 23 22 26 26 C 1.47155 * 118.03350 * 50.54158 * 16 15 13 27 27 C 1.53292 * 108.38159 * 309.46486 * 26 16 15 28 28 O 1.42959 * 109.22637 * 52.30228 * 27 26 16 29 29 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46920 * 299.99520 * 1 2 3 31 31 H 1.08991 * 109.47462 * 60.00196 * 1 2 3 32 32 H 0.96991 * 120.00064 * 94.99822 * 4 2 1 33 33 H 0.97005 * 119.99866 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.68553 * 307.50238 * 15 13 2 35 35 H 1.09003 * 109.67992 * 68.05217 * 15 13 2 36 36 H 1.08002 * 120.06465 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.90313 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.83918 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.93644 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.67934 * 69.18484 * 26 16 15 41 41 H 1.08999 * 109.68053 * 189.73941 * 26 16 15 42 42 H 1.09005 * 109.50956 * 172.23149 * 27 26 16 43 43 H 1.09008 * 109.51179 * 292.32517 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1545 -0.0063 2.3743 6 1 1.9015 1.0427 2.4219 7 6 2.6177 -0.6605 3.5075 8 7 2.9256 -1.9389 3.4497 9 14 2.8028 0.2730 5.1149 10 1 1.5366 0.1870 5.8860 11 1 3.9073 -0.3226 5.9089 12 1 3.1117 1.6969 4.8277 13 6 2.0400 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2055 15 6 1.6349 0.0697 -2.4984 16 7 1.9697 -0.7334 -3.6851 17 6 2.6770 -0.2049 -4.7034 18 8 2.9853 0.9708 -4.6838 19 6 3.0781 -1.0548 -5.8437 20 6 2.1220 -1.8098 -6.5262 21 6 2.5029 -2.6013 -7.5892 22 6 3.8295 -2.6487 -7.9813 23 6 4.7824 -1.9034 -7.3116 24 6 4.4144 -1.1019 -6.2482 25 17 5.6103 -0.1611 -5.4126 26 6 1.5098 -2.1305 -3.7270 27 6 1.9209 -2.8143 -2.4180 28 8 1.4658 -2.0289 -1.3135 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.2496 -2.3960 4.2416 34 1 0.5627 0.2648 -2.4777 35 1 2.1797 1.0133 -2.5280 36 1 1.0863 -1.7739 -6.2221 37 1 1.7641 -3.1858 -8.1172 38 1 4.1217 -3.2702 -8.8149 39 1 5.8156 -1.9447 -7.6231 40 1 0.4250 -2.1569 -3.8299 41 1 1.9717 -2.6440 -4.5702 42 1 1.4720 -3.8064 -2.3689 43 1 3.0066 -2.9037 -2.3793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725329252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:06 Heat of formation + Delta-G solvation = -32.282698 kcal Electronic energy + Delta-G solvation = -27329.670053 eV Core-core repulsion = 23401.662365 eV Total energy + Delta-G solvation = -3928.007687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85188 -39.29733 -38.09932 -36.70624 -35.53620 -34.57541 -32.61687 -31.77505 -31.18642 -30.21297 -28.48346 -27.27851 -24.97011 -24.09788 -23.51928 -22.97433 -22.06799 -19.89665 -19.59591 -17.91065 -17.21037 -17.06531 -16.56473 -16.08714 -15.92731 -15.30701 -15.11741 -15.02651 -14.45626 -14.36810 -14.23765 -13.92363 -13.82520 -13.32829 -13.11537 -12.88990 -12.59530 -12.37272 -12.23636 -12.00929 -11.91084 -11.71953 -11.33485 -11.17960 -11.12036 -10.82923 -10.72557 -10.53259 -10.29225 -10.10210 -9.86704 -9.83407 -9.63627 -9.43181 -9.16577 -8.87743 -8.51582 -6.91521 -5.71620 -3.00334 0.44956 0.70178 1.82137 2.42855 2.70367 3.17797 3.46598 3.51730 3.53287 3.97183 4.05799 4.28948 4.44706 4.59381 4.71701 4.75501 4.82159 4.90026 4.98742 5.08839 5.16975 5.29082 5.32837 5.43285 5.61129 5.64184 5.66672 5.68717 5.71777 5.81201 5.85766 5.98809 5.99631 6.18472 6.22257 6.34515 6.47577 6.66493 6.83667 7.15078 7.18838 7.47369 7.73698 7.93945 8.46558 9.58476 10.15965 10.52678 11.50819 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002802 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.216640 B = 9989.101136 C =10451.607875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.604 5.604 17 C 0.559 3.441 18 O -0.517 6.517 19 C -0.116 4.116 20 C -0.081 4.081 21 C -0.120 4.120 22 C -0.090 4.090 23 C -0.115 4.115 24 C 0.004 3.996 25 Cl -0.043 7.043 26 C 0.065 3.935 27 C 0.046 3.954 28 O -0.357 6.357 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -4.301 -26.612 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.392 6.392 19 C -0.120 4.120 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.023 4.023 25 Cl -0.014 7.014 26 C -0.058 4.058 27 C -0.032 4.032 28 O -0.275 6.275 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.756 -3.504 -26.215 26.459 hybrid contribution 0.434 0.158 0.730 0.864 sum -0.322 -3.346 -25.485 25.706 Atomic orbital electron populations 1.22411 0.98625 1.01617 0.99546 1.20194 0.92844 0.94612 0.84915 0.92277 1.42350 1.77845 1.10903 1.04955 1.19248 1.36533 0.93767 0.87416 0.91170 1.24734 1.02225 0.95960 0.98009 1.69680 1.50890 1.08571 1.28772 0.86208 0.77263 0.78821 0.84016 1.21761 1.21846 1.20772 1.22989 0.97680 0.83039 0.94646 0.91807 1.22540 1.02110 0.95794 0.83378 1.48076 1.54025 1.12939 1.18739 1.18129 0.78074 0.87208 0.82011 1.90828 1.54462 1.15651 1.78270 1.19826 0.92985 1.00406 0.98795 1.21335 0.99174 0.94386 0.95067 1.21213 0.96593 0.99214 0.96836 1.21311 0.92712 0.97739 0.99040 1.21087 1.01103 0.96513 0.94683 1.20991 0.89545 0.96228 0.95585 1.98432 1.55084 1.70945 1.76925 1.22743 1.00694 0.81899 1.00497 1.22899 0.99614 0.95195 0.85502 1.88105 1.67453 1.25862 1.46073 0.92430 0.92880 0.94674 0.77672 0.93588 0.89876 0.88091 0.84387 0.84607 0.84562 0.84226 0.90142 0.88787 0.87801 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.06 37.16 0.34 -2.65 16 2 C 0.19 3.74 2.77 -67.93 -0.19 3.55 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -18.38 5.10 -53.42 -0.27 -18.66 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 9 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.08 1.31 2.61 -26.58 -0.07 1.24 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 15 C 0.08 1.24 5.81 -3.54 -0.02 1.22 16 16 N -0.60 -7.94 3.02 -173.43 -0.52 -8.47 16 17 C 0.56 7.89 6.68 -12.36 -0.08 7.80 16 18 O -0.52 -9.00 15.54 5.31 0.08 -8.92 16 19 C -0.12 -1.30 4.92 -104.94 -0.52 -1.82 16 20 C -0.08 -0.64 7.45 -39.18 -0.29 -0.93 16 21 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 22 C -0.09 -0.52 10.04 -39.51 -0.40 -0.92 16 23 C -0.12 -0.91 9.82 -39.60 -0.39 -1.29 16 24 C 0.00 0.05 6.34 -39.07 -0.25 -0.20 16 25 Cl -0.04 -0.55 27.30 -51.86 -1.42 -1.97 16 26 C 0.06 0.66 5.60 -3.53 -0.02 0.64 16 27 C 0.05 0.57 6.98 37.31 0.26 0.83 16 28 O -0.36 -6.02 9.24 -35.23 -0.33 -6.35 16 29 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 32 H 0.39 10.73 7.59 -40.82 -0.31 10.42 16 33 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.15 6.27 -51.93 -0.33 0.82 16 35 H 0.10 1.59 7.11 -51.93 -0.37 1.22 16 36 H 0.14 0.88 7.28 -52.49 -0.38 0.50 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.77 4.90 -51.93 -0.25 0.52 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -34.10 363.91 -9.25 -43.35 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.71 Total: 6.59 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.27 Total: -0.95 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.07 Total: -54.90 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.24 Total: -15.26 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.10 -9.25 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725329252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.071 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds