Wall clock time and date at job start Tue Mar 31 2020 20:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47396 * 2 1 4 4 N 1.46505 * 109.47197 * 120.00524 * 2 1 3 5 5 C 1.36937 * 119.99552 * 274.72245 * 4 2 1 6 6 H 1.08006 * 120.00257 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99769 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47404 * 89.99730 * 9 7 5 11 11 H 1.48496 * 109.47172 * 210.00174 * 9 7 5 12 12 H 1.48505 * 109.46929 * 329.99599 * 9 7 5 13 13 C 1.53005 * 109.47073 * 240.00465 * 2 1 3 14 14 H 1.08997 * 109.51005 * 185.10635 * 13 2 1 15 15 C 1.53284 * 109.51572 * 64.99439 * 13 2 1 16 16 N 1.47150 * 108.38699 * 187.77264 * 15 13 2 17 17 C 1.34780 * 120.98421 * 230.55606 * 16 15 13 18 18 O 1.21560 * 120.00227 * 355.96417 * 17 16 15 19 19 C 1.47764 * 120.00078 * 175.95420 * 17 16 15 20 20 C 1.39636 * 120.15382 * 52.75612 * 19 17 16 21 21 C 1.37897 * 119.86380 * 180.02562 * 20 19 17 22 22 C 1.38413 * 120.18408 * 359.97438 * 21 20 19 23 23 C 1.38268 * 120.32051 * 359.97438 * 22 21 20 24 24 C 1.38160 * 120.12912 * 359.76942 * 23 22 21 25 25 Cl 1.73591 * 120.09408 * 180.27359 * 24 23 22 26 26 C 1.47155 * 118.03350 * 50.54158 * 16 15 13 27 27 C 1.53292 * 108.38159 * 309.46486 * 26 16 15 28 28 O 1.42959 * 109.22637 * 52.30228 * 27 26 16 29 29 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46920 * 299.99520 * 1 2 3 31 31 H 1.08991 * 109.47462 * 60.00196 * 1 2 3 32 32 H 0.96991 * 120.00064 * 94.99822 * 4 2 1 33 33 H 0.97005 * 119.99866 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.68553 * 307.50238 * 15 13 2 35 35 H 1.09003 * 109.67992 * 68.05217 * 15 13 2 36 36 H 1.08002 * 120.06465 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.90313 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.83918 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.93644 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.67934 * 69.18484 * 26 16 15 41 41 H 1.08999 * 109.68053 * 189.73941 * 26 16 15 42 42 H 1.09005 * 109.50956 * 172.23149 * 27 26 16 43 43 H 1.09008 * 109.51179 * 292.32517 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1545 -0.0063 2.3743 6 1 1.9015 1.0427 2.4219 7 6 2.6177 -0.6605 3.5075 8 7 2.9256 -1.9389 3.4497 9 14 2.8028 0.2730 5.1149 10 1 1.5366 0.1870 5.8860 11 1 3.9073 -0.3226 5.9089 12 1 3.1117 1.6969 4.8277 13 6 2.0400 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2055 15 6 1.6349 0.0697 -2.4984 16 7 1.9697 -0.7334 -3.6851 17 6 2.6770 -0.2049 -4.7034 18 8 2.9853 0.9708 -4.6838 19 6 3.0781 -1.0548 -5.8437 20 6 2.1220 -1.8098 -6.5262 21 6 2.5029 -2.6013 -7.5892 22 6 3.8295 -2.6487 -7.9813 23 6 4.7824 -1.9034 -7.3116 24 6 4.4144 -1.1019 -6.2482 25 17 5.6103 -0.1611 -5.4126 26 6 1.5098 -2.1305 -3.7270 27 6 1.9209 -2.8143 -2.4180 28 8 1.4658 -2.0289 -1.3135 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.2496 -2.3960 4.2416 34 1 0.5627 0.2648 -2.4777 35 1 2.1797 1.0133 -2.5280 36 1 1.0863 -1.7739 -6.2221 37 1 1.7641 -3.1858 -8.1172 38 1 4.1217 -3.2702 -8.8149 39 1 5.8156 -1.9447 -7.6231 40 1 0.4250 -2.1569 -3.8299 41 1 1.9717 -2.6440 -4.5702 42 1 1.4720 -3.8064 -2.3689 43 1 3.0066 -2.9037 -2.3793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725329252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:05 Heat of formation + Delta-G solvation = -54.991666 kcal Electronic energy + Delta-G solvation = -27330.654787 eV Core-core repulsion = 23401.662365 eV Total energy + Delta-G solvation = -3928.992422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82447 -40.24643 -39.14278 -37.53854 -37.13184 -35.81149 -34.37396 -32.71157 -31.78275 -31.64137 -29.99538 -28.55798 -26.51753 -25.18244 -24.87418 -23.62761 -23.23355 -21.25359 -20.70672 -19.32706 -18.71283 -17.95687 -17.58913 -17.16322 -16.88690 -16.73493 -16.23099 -16.09494 -15.88319 -15.44598 -15.20525 -15.06823 -14.87229 -14.60101 -14.44409 -14.14192 -14.01234 -13.63040 -13.30455 -13.02408 -12.98657 -12.83774 -12.53096 -12.48638 -12.43884 -12.39048 -12.18862 -12.03989 -11.85507 -11.65441 -11.58595 -11.22346 -10.96968 -10.93004 -10.07739 -9.83071 -9.63868 -9.01376 -7.92609 -5.21393 -0.20744 0.13408 1.05369 1.42508 1.46869 1.48686 1.56836 1.76094 2.55949 2.56215 2.75791 3.23304 3.41014 3.55713 3.70499 3.88707 3.91865 3.97610 4.02037 4.10511 4.25681 4.28017 4.30138 4.35053 4.40739 4.49355 4.58159 4.61097 4.74907 4.80422 4.81475 4.94056 5.06279 5.09243 5.20571 5.21284 5.26682 5.34458 5.51093 5.62220 5.73092 6.15519 6.21740 6.29094 6.90184 7.35171 8.10413 8.35522 9.30930 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002802 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.216640 B = 9989.101136 C =10451.607875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.056 0.944 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.270 1.270 13 C 0.092 3.908 14 H 0.034 0.966 15 C 0.094 3.906 16 N -0.605 5.605 17 C 0.556 3.444 18 O -0.562 6.562 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.020 4.020 25 Cl -0.078 7.078 26 C 0.070 3.930 27 C 0.038 3.962 28 O -0.378 6.378 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -5.562 -29.452 30.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.223 1.223 12 H -0.195 1.195 13 C 0.032 3.968 14 H 0.053 0.947 15 C -0.029 4.029 16 N -0.338 5.338 17 C 0.345 3.655 18 O -0.440 6.440 19 C -0.146 4.146 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.095 4.095 23 C -0.137 4.137 24 C -0.048 4.048 25 Cl -0.049 7.049 26 C -0.051 4.051 27 C -0.039 4.039 28 O -0.297 6.297 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.207 0.793 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.174 0.826 37 H 0.192 0.808 38 H 0.191 0.809 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.438 -4.758 -29.100 29.587 hybrid contribution 0.923 0.456 1.432 1.764 sum -1.515 -4.301 -27.668 28.041 Atomic orbital electron populations 1.22200 0.96578 1.01319 1.00567 1.20423 0.94114 0.94355 0.84371 0.92583 1.42524 1.78323 1.10403 1.06051 1.19643 1.34975 0.94112 0.88378 0.90580 1.25553 1.03008 0.96907 1.01427 1.69842 1.52648 1.10158 1.29330 0.85157 0.76902 0.77994 0.79821 1.21328 1.22310 1.19514 1.22542 0.95744 0.83976 0.94540 0.94750 1.22263 1.02604 0.94909 0.83086 1.48158 1.53865 1.13942 1.17835 1.18675 0.77074 0.87060 0.82720 1.90791 1.56004 1.17778 1.79472 1.19732 0.93894 1.02028 0.98935 1.21597 0.99232 0.93771 0.95241 1.21682 0.97383 0.97904 0.95485 1.21798 0.92263 0.96471 0.98926 1.21363 1.02580 0.96033 0.93772 1.21244 0.88994 0.97540 0.96994 1.98413 1.56439 1.72169 1.77914 1.22921 1.02280 0.80031 0.99889 1.23205 0.99182 0.96147 0.85397 1.88054 1.67542 1.25683 1.48426 0.93297 0.94389 0.91021 0.79276 0.94126 0.88269 0.89627 0.82617 0.80778 0.80897 0.82932 0.87629 0.86240 0.84941 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.06 71.98 0.65 -4.67 16 2 C 0.18 7.25 2.77 44.99 0.12 7.38 16 3 H 0.06 2.32 8.08 -2.39 -0.02 2.31 16 4 N -0.73 -38.61 5.10 -322.93 -1.65 -40.25 16 5 C -0.24 -13.68 9.93 84.03 0.83 -12.85 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 9 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.09 3.25 2.61 30.69 0.08 3.33 16 14 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 15 C 0.09 2.78 5.81 86.35 0.50 3.29 16 16 N -0.61 -15.48 3.02 -820.87 -2.48 -17.96 16 17 C 0.56 15.69 6.68 86.76 0.58 16.27 16 18 O -0.56 -20.35 15.54 -3.91 -0.06 -20.41 16 19 C -0.14 -3.01 4.92 -20.07 -0.10 -3.11 16 20 C -0.08 -0.98 7.45 22.53 0.17 -0.81 16 21 C -0.11 -0.70 10.03 22.23 0.22 -0.47 16 22 C -0.08 -0.54 10.04 22.32 0.22 -0.32 16 23 C -0.12 -1.60 9.82 22.26 0.22 -1.38 16 24 C -0.02 -0.43 6.34 22.60 0.14 -0.29 16 25 Cl -0.08 -2.11 27.30 -2.72 -0.07 -2.19 16 26 C 0.07 1.27 5.60 86.35 0.48 1.75 16 27 C 0.04 0.89 6.98 72.08 0.50 1.40 16 28 O -0.38 -12.72 9.24 -148.98 -1.38 -14.10 16 29 H 0.05 1.85 7.55 -2.38 -0.02 1.83 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 2.05 6.42 -2.39 -0.02 2.03 16 32 H 0.38 21.53 7.59 -92.71 -0.70 20.83 16 33 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 34 H 0.10 2.58 6.27 -2.39 -0.01 2.57 16 35 H 0.09 2.80 7.11 -2.39 -0.02 2.78 16 36 H 0.16 1.30 7.28 -2.91 -0.02 1.27 16 37 H 0.17 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.17 0.01 8.06 -2.91 -0.02 -0.02 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.57 4.90 -2.39 -0.01 1.56 16 42 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -78.67 363.91 2.11 -76.55 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.34 Total: 24.20 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.10 Total: 5.44 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -3.84 Total: -118.90 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.44 Total: -34.51 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.19 kcal Total: -78.67 2.11 -76.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725329252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.562 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds