Wall clock time and date at job start Tue Mar 31 2020 20:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.50711 * 119.99937 * 179.97438 * 7 6 5 10 10 H 1.09003 * 110.65967 * 304.29941 * 9 7 6 11 11 C 1.54700 * 110.74870 * 67.51330 * 9 7 6 12 12 C 1.52142 * 101.70522 * 93.10059 * 11 9 7 13 13 C 1.37742 * 132.12500 * 195.90369 * 12 11 9 14 14 C 1.38452 * 119.96927 * 179.01890 * 13 12 11 15 15 Cl 1.73605 * 120.13148 * 179.97438 * 14 13 12 16 16 C 1.38384 * 119.73820 * 0.02562 * 14 13 12 17 17 C 1.37932 * 120.34059 * 0.17437 * 16 14 13 18 18 C 1.38880 * 107.07769 * 15.37425 * 12 11 9 19 19 O 1.36161 * 111.22676 * 1.09399 * 18 12 11 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 35 35 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 36 36 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 37 37 H 1.09002 * 110.93940 * 211.19905 * 11 9 7 38 38 H 1.09004 * 110.94105 * 334.87992 * 11 9 7 39 39 H 1.08004 * 120.01467 * 359.06111 * 13 12 11 40 40 H 1.08002 * 119.83235 * 180.20094 * 16 14 13 41 41 H 1.07998 * 119.87289 * 180.02562 * 17 16 14 42 42 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 43 43 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1586 -0.8015 2.0231 9 6 5.8766 -2.0511 4.0051 10 1 5.3961 -1.6563 4.9003 11 6 5.6488 -3.5768 3.8884 12 6 6.9741 -4.0429 3.3043 13 6 7.3523 -5.2182 2.6936 14 6 8.6476 -5.3705 2.2289 15 17 9.1289 -6.8503 1.4591 16 6 9.5573 -4.3390 2.3814 17 6 9.1809 -3.1632 2.9965 18 6 7.8806 -3.0038 3.4696 19 8 7.3068 -1.9456 4.1059 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.7480 -0.0026 -4.6401 25 14 3.0615 -2.4730 -3.4239 26 1 1.8659 -3.2913 -3.7497 27 1 4.1416 -2.7636 -4.4007 28 1 3.5302 -2.8049 -2.0543 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7359 3.1105 37 1 5.4763 -4.0211 4.8687 38 1 4.8229 -3.7968 3.2118 39 1 6.6385 -6.0203 2.5767 40 1 10.5672 -4.4550 2.0165 41 1 9.8969 -2.3629 3.1112 42 1 2.2490 -1.6318 -1.1526 43 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731731283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:14 Heat of formation + Delta-G solvation = -61.771039 kcal Electronic energy + Delta-G solvation = -26443.656003 eV Core-core repulsion = 22514.369605 eV Total energy + Delta-G solvation = -3929.286398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.64060 -40.41691 -38.79935 -38.20813 -37.18790 -35.98182 -34.35165 -33.81873 -31.83822 -31.00156 -30.86537 -29.38800 -26.05547 -25.37835 -23.95357 -23.43783 -22.88223 -21.97614 -21.37047 -19.76048 -19.03594 -18.24809 -18.11901 -17.36150 -17.00368 -16.83052 -16.33288 -16.07943 -15.78868 -15.27644 -15.23930 -14.96464 -14.64153 -14.63069 -14.37044 -14.25080 -13.84659 -13.70886 -13.62323 -13.55467 -13.35011 -12.92193 -12.81534 -12.61255 -12.41288 -12.30703 -12.23775 -12.12986 -12.02820 -11.79420 -11.78555 -11.59502 -11.02466 -10.87947 -10.20957 -10.08347 -9.30241 -9.19701 -8.02633 -5.34002 -0.01247 0.11077 1.05122 1.32675 1.37489 1.40220 1.43585 1.78295 2.24196 2.46622 2.49135 3.21044 3.29896 3.35713 3.57022 3.63086 3.70698 3.96052 3.99859 4.07043 4.13203 4.16400 4.28241 4.42252 4.60193 4.64721 4.65569 4.74796 4.76024 4.83915 4.90478 5.01257 5.08284 5.08445 5.15167 5.15658 5.28877 5.36273 5.37964 5.60054 5.79833 5.89567 6.22296 6.46605 7.09778 7.15762 7.87299 8.04101 9.19573 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.003120 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.942204 B = 8972.283133 C =10743.995942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.039 0.961 4 C -0.117 4.117 5 C 0.127 3.873 6 N -0.701 5.701 7 C 0.483 3.517 8 O -0.580 6.580 9 C 0.066 3.934 10 H 0.193 0.807 11 C -0.087 4.087 12 C -0.173 4.173 13 C -0.066 4.066 14 C -0.075 4.075 15 Cl -0.064 7.064 16 C -0.078 4.078 17 C -0.136 4.136 18 C 0.091 3.909 19 O -0.290 6.290 20 N -0.751 5.751 21 C -0.221 4.221 22 H 0.056 0.944 23 C -0.066 4.066 24 N -0.987 5.987 25 Si 0.950 3.050 26 H -0.273 1.273 27 H -0.303 1.303 28 H -0.256 1.256 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.423 0.577 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.364 0.636 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -13.439 27.452 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 H 0.058 0.942 4 C -0.155 4.155 5 C 0.003 3.997 6 N -0.356 5.356 7 C 0.269 3.731 8 O -0.459 6.459 9 C 0.007 3.993 10 H 0.210 0.790 11 C -0.124 4.124 12 C -0.174 4.174 13 C -0.084 4.084 14 C -0.101 4.101 15 Cl -0.035 7.035 16 C -0.096 4.096 17 C -0.155 4.155 18 C 0.045 3.955 19 O -0.203 6.203 20 N -0.395 5.395 21 C -0.353 4.353 22 H 0.074 0.926 23 C -0.257 4.257 24 N -0.638 5.638 25 Si 0.778 3.222 26 H -0.199 1.199 27 H -0.231 1.231 28 H -0.181 1.181 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.166 0.834 38 H 0.131 0.869 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.197 0.803 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.421 -12.807 26.852 30.435 hybrid contribution 0.342 -0.813 -1.070 1.386 sum 6.763 -13.620 25.782 29.933 Atomic orbital electron populations 1.22242 0.96549 1.01669 1.00939 1.20455 0.93425 0.95252 0.85039 0.94243 1.21965 0.91969 1.02760 0.98815 1.21182 0.95683 0.96326 0.86549 1.45753 1.06774 1.56199 1.26835 1.21681 0.83033 0.80518 0.87835 1.90774 1.56881 1.47300 1.50983 1.23720 0.80034 0.97320 0.98200 0.79048 1.22042 0.94564 0.90360 1.05403 1.21087 0.97744 0.94576 1.04011 1.20352 0.94778 0.97275 0.96026 1.20829 0.95371 0.89996 1.03934 1.98369 1.91826 1.33337 1.79969 1.20999 1.00593 0.90712 0.97315 1.20467 0.94654 0.99340 1.01001 1.19945 0.95021 0.87069 0.93448 1.86929 1.19739 1.44875 1.68744 1.42856 1.79942 1.09563 1.07163 1.19037 1.34329 0.94429 0.87480 0.92597 1.25447 1.02666 1.02232 0.95395 1.69877 1.55010 1.37583 1.01342 0.85481 0.77624 0.81399 0.77690 1.19897 1.23079 1.18099 0.95457 0.92534 0.90263 0.86858 0.89636 0.94605 0.93204 0.73809 0.83377 0.86852 0.82725 0.82254 0.83676 0.80305 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.49 71.98 0.68 -3.85 16 2 C 0.17 5.58 2.89 44.99 0.13 5.71 16 3 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 4 C -0.12 -2.63 4.87 30.60 0.15 -2.48 16 5 C 0.13 3.57 5.56 86.38 0.48 4.05 16 6 N -0.70 -13.61 5.48 -463.07 -2.54 -16.15 16 7 C 0.48 12.14 7.04 87.66 0.62 12.76 16 8 O -0.58 -22.52 16.49 15.22 0.25 -22.27 16 9 C 0.07 1.04 4.10 30.43 0.12 1.16 16 10 H 0.19 1.06 8.14 -2.39 -0.02 1.04 16 11 C -0.09 -0.95 6.68 30.89 0.21 -0.74 16 12 C -0.17 -3.33 6.27 -19.37 -0.12 -3.45 16 13 C -0.07 -1.23 9.82 22.20 0.22 -1.02 16 14 C -0.07 -1.50 6.33 22.36 0.14 -1.36 16 15 Cl -0.06 -1.20 28.97 -2.72 -0.08 -1.27 16 16 C -0.08 -1.54 9.81 22.23 0.22 -1.32 16 17 C -0.14 -3.02 10.06 22.45 0.23 -2.80 16 18 C 0.09 2.14 6.86 22.67 0.16 2.30 16 19 O -0.29 -6.85 10.42 -77.15 -0.80 -7.66 16 20 N -0.75 -33.63 4.38 -322.93 -1.41 -35.04 16 21 C -0.22 -12.63 10.41 84.04 0.87 -11.75 16 22 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 24 N -0.99 -64.88 13.97 21.65 0.30 -64.58 16 25 Si 0.95 46.82 27.74 68.60 1.90 48.72 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 28 H -0.26 -11.50 6.51 99.48 0.65 -10.86 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.34 7.75 -2.39 -0.02 1.32 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.42 3.77 8.47 -92.71 -0.79 2.98 16 37 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.11 1.00 7.85 -2.39 -0.02 0.98 16 39 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.36 15.71 5.66 -92.71 -0.52 15.18 16 43 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -85.55 377.37 1.87 -83.69 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.32 Total: 20.86 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.57 Total: -6.30 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -3.65 Total: -115.76 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.55 Total: -29.93 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.27 kcal Total: -85.55 1.87 -83.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731731283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.916 kcal (2) G-P(sol) polarization free energy of solvation -85.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds