Wall clock time and date at job start Tue Mar 31 2020 20:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.66412 * 55.70262 * 9 7 6 11 11 C 1.54702 * 110.74976 * 292.48783 * 9 7 6 12 12 C 1.51942 * 101.77532 * 216.43241 * 11 9 7 13 13 C 1.37745 * 132.09305 * 195.79351 * 12 11 9 14 14 C 1.38451 * 119.96615 * 179.32714 * 13 12 11 15 15 Cl 1.73596 * 120.12874 * 180.02562 * 14 13 12 16 16 C 1.38382 * 119.73393 * 359.97438 * 14 13 12 17 17 C 1.37929 * 120.34599 * 0.15227 * 16 14 13 18 18 C 1.38874 * 107.10011 * 15.44807 * 12 11 9 19 19 O 1.36164 * 111.24574 * 0.78609 * 18 12 11 20 20 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 21 21 C 1.36935 * 120.00357 * 275.00133 * 20 2 1 22 22 H 1.08001 * 119.99995 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00332 * 179.97438 * 21 20 2 24 24 N 1.31628 * 119.99614 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00299 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46964 * 90.00032 * 25 23 21 27 27 H 1.48495 * 109.46942 * 210.00103 * 25 23 21 28 28 H 1.48502 * 109.47114 * 330.00123 * 25 23 21 29 29 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 31 31 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 36 36 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.94047 * 334.46449 * 11 9 7 38 38 H 1.08998 * 110.94401 * 98.15707 * 11 9 7 39 39 H 1.08000 * 120.01634 * 359.30261 * 13 12 11 40 40 H 1.08006 * 119.82861 * 180.16747 * 16 14 13 41 41 H 1.07991 * 119.87527 * 180.02562 * 17 16 14 42 42 H 0.97006 * 119.99491 * 95.00433 * 20 2 1 43 43 H 0.96998 * 119.99521 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 7 4.0531 -1.3033 -2.5100 7 6 5.3740 -1.3385 -2.7758 8 8 6.1582 -0.7986 -2.0247 9 6 5.8764 -2.0489 -4.0063 10 1 5.3952 -1.6547 -4.9014 11 6 5.6499 -3.5747 -3.8891 12 6 6.8920 -4.1257 -4.5691 13 6 7.1988 -5.3760 -5.0587 14 6 8.4275 -5.6027 -5.6553 15 17 8.8183 -7.1767 -6.2744 16 6 9.3421 -4.5693 -5.7571 17 6 9.0369 -3.3175 -5.2648 18 6 7.8044 -3.0827 -4.6599 19 8 7.3064 -1.9419 -4.1079 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8918 1.0404 2.4244 23 6 2.6113 -0.6618 3.5094 24 7 2.9243 -1.9390 3.4503 25 14 2.7890 0.2699 5.1186 26 1 1.5210 0.1786 5.8860 27 1 3.8932 -0.3234 5.9147 28 1 3.0940 1.6952 4.8343 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0726 -0.4259 36 1 3.4258 -1.7349 -3.1111 37 1 5.6092 -3.8835 -2.8445 38 1 4.7461 -3.8763 -4.4185 39 1 6.4815 -6.1793 -4.9769 40 1 10.3000 -4.7437 -6.2246 41 1 9.7562 -2.5164 -5.3487 42 1 2.2490 -1.6317 1.1527 43 1 3.2470 -2.3963 4.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731731285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:20 Heat of formation + Delta-G solvation = -41.035455 kcal Electronic energy + Delta-G solvation = -25768.008314 eV Core-core repulsion = 21839.621078 eV Total energy + Delta-G solvation = -3928.387235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75061 -39.46225 -38.01069 -36.66097 -36.43592 -34.52952 -33.24868 -32.27246 -30.45888 -30.26537 -29.06201 -28.02250 -25.08585 -23.80574 -22.89730 -22.43963 -22.15264 -20.78079 -19.75938 -18.04705 -17.66672 -17.34637 -17.18190 -16.77637 -15.73042 -15.44199 -15.00082 -14.75429 -14.55855 -14.20504 -13.98793 -13.73484 -13.66729 -13.52402 -13.43904 -13.01673 -12.76463 -12.64611 -12.51982 -12.13631 -12.08157 -11.71294 -11.58690 -11.20200 -11.14256 -10.99506 -10.95089 -10.77680 -10.65515 -10.32653 -10.03456 -9.76006 -9.64800 -9.43385 -9.00834 -8.89354 -8.46999 -6.96746 -5.76165 -3.04969 0.70382 0.79327 1.74287 2.36939 2.51482 3.07662 3.37885 3.44809 3.50397 3.51998 3.89628 4.07822 4.34637 4.48058 4.60195 4.61204 4.65325 4.75489 5.03755 5.18683 5.22448 5.30001 5.34035 5.43583 5.53210 5.56403 5.63189 5.75976 5.82968 5.87091 5.97014 6.01468 6.13160 6.27592 6.34019 6.38789 6.55829 6.64269 6.67482 6.82979 7.02965 7.43620 7.71283 8.14864 8.42229 9.53716 10.09639 10.44054 11.46457 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.001999 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.697815 B =14001.229532 C =14495.862634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.721 5.721 7 C 0.512 3.488 8 O -0.509 6.509 9 C 0.064 3.936 10 H 0.115 0.885 11 C -0.098 4.098 12 C -0.162 4.162 13 C -0.056 4.056 14 C -0.067 4.067 15 Cl -0.067 7.067 16 C -0.072 4.072 17 C -0.125 4.125 18 C 0.117 3.883 19 O -0.269 6.269 20 N -0.723 5.723 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.398 0.602 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -7.029 -24.978 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.068 0.932 4 C -0.171 4.171 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.295 3.705 8 O -0.383 6.383 9 C 0.004 3.996 10 H 0.132 0.868 11 C -0.135 4.135 12 C -0.163 4.163 13 C -0.075 4.075 14 C -0.094 4.094 15 Cl -0.038 7.038 16 C -0.091 4.091 17 C -0.144 4.144 18 C 0.071 3.929 19 O -0.181 6.181 20 N -0.365 5.365 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.331 -6.414 -24.232 26.117 hybrid contribution -0.290 -0.320 0.639 0.771 sum 7.041 -6.734 -23.594 25.526 Atomic orbital electron populations 1.22424 0.99081 1.00842 1.00003 1.20156 0.91922 0.95617 0.85977 0.93237 1.22065 0.93606 1.01911 0.99485 1.21533 0.94576 0.97264 0.86618 1.45974 1.06288 1.57192 1.27933 1.19878 0.83157 0.81248 0.86250 1.90807 1.55083 1.44056 1.48350 1.23258 0.81128 0.96380 0.98806 0.86762 1.21837 0.96960 0.91668 1.03064 1.20662 0.97682 0.94110 1.03883 1.20111 0.95363 0.95870 0.96170 1.20619 0.96150 0.87599 1.04988 1.98372 1.94059 1.25298 1.86119 1.20767 0.99154 0.90579 0.98614 1.20195 0.95443 0.97857 1.00861 1.19700 0.94752 0.85712 0.92763 1.86990 1.19958 1.35084 1.76058 1.42449 1.78109 1.10636 1.05353 1.19214 1.36556 0.93861 0.87314 0.91195 1.24731 1.02112 0.95977 0.98075 1.69653 1.50913 1.08675 1.28856 0.86213 0.77227 0.78888 0.84015 1.21818 1.21800 1.20753 0.92696 0.94561 0.93518 0.91815 0.91498 0.91526 0.89452 0.76883 0.87810 0.87541 0.84428 0.83947 0.84145 0.78309 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.15 0.35 -2.38 16 2 C 0.17 3.18 2.89 -67.93 -0.20 2.99 16 3 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 4 C -0.13 -1.85 4.87 -26.73 -0.13 -1.98 16 5 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 6 N -0.72 -8.53 5.56 -60.30 -0.33 -8.87 16 7 C 0.51 7.17 7.13 -10.98 -0.08 7.09 16 8 O -0.51 -10.02 16.57 -13.50 -0.22 -10.24 16 9 C 0.06 0.66 4.04 -26.99 -0.11 0.56 16 10 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.10 -0.83 6.66 -26.37 -0.18 -1.00 16 12 C -0.16 -1.56 6.28 -103.95 -0.65 -2.21 16 13 C -0.06 -0.48 9.82 -39.68 -0.39 -0.87 16 14 C -0.07 -0.57 6.33 -39.45 -0.25 -0.82 16 15 Cl -0.07 -0.53 28.97 -51.86 -1.50 -2.04 16 16 C -0.07 -0.57 9.81 -39.64 -0.39 -0.96 16 17 C -0.12 -1.13 10.06 -39.31 -0.40 -1.53 16 18 C 0.12 1.29 7.04 -38.96 -0.27 1.02 16 19 O -0.27 -3.55 10.39 -39.33 -0.41 -3.96 16 20 N -0.72 -17.25 4.57 -53.43 -0.24 -17.50 16 21 C -0.24 -6.49 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.73 7.75 -51.93 -0.40 1.32 16 36 H 0.40 3.11 8.47 -40.82 -0.35 2.76 16 37 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.38 9.74 7.80 -40.82 -0.32 9.43 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -34.19 380.85 -10.32 -44.51 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.09 Total: 7.49 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.95 Total: -5.34 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.15 Total: -53.68 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.63 Total: -14.20 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.19 -10.32 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731731285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.478 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds