Wall clock time and date at job start Tue Mar 31 2020 20:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.66412 * 55.70262 * 9 7 6 11 11 C 1.54702 * 110.74976 * 292.48783 * 9 7 6 12 12 C 1.51942 * 101.77532 * 216.43241 * 11 9 7 13 13 C 1.37745 * 132.09305 * 195.79351 * 12 11 9 14 14 C 1.38451 * 119.96615 * 179.32714 * 13 12 11 15 15 Cl 1.73596 * 120.12874 * 180.02562 * 14 13 12 16 16 C 1.38382 * 119.73393 * 359.97438 * 14 13 12 17 17 C 1.37929 * 120.34599 * 0.15227 * 16 14 13 18 18 C 1.38874 * 107.10011 * 15.44807 * 12 11 9 19 19 O 1.36164 * 111.24574 * 0.78609 * 18 12 11 20 20 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 21 21 C 1.36935 * 120.00357 * 275.00133 * 20 2 1 22 22 H 1.08001 * 119.99995 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00332 * 179.97438 * 21 20 2 24 24 N 1.31628 * 119.99614 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00299 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46964 * 90.00032 * 25 23 21 27 27 H 1.48495 * 109.46942 * 210.00103 * 25 23 21 28 28 H 1.48502 * 109.47114 * 330.00123 * 25 23 21 29 29 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 31 31 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 36 36 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.94047 * 334.46449 * 11 9 7 38 38 H 1.08998 * 110.94401 * 98.15707 * 11 9 7 39 39 H 1.08000 * 120.01634 * 359.30261 * 13 12 11 40 40 H 1.08006 * 119.82861 * 180.16747 * 16 14 13 41 41 H 1.07991 * 119.87527 * 180.02562 * 17 16 14 42 42 H 0.97006 * 119.99491 * 95.00433 * 20 2 1 43 43 H 0.96998 * 119.99521 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 7 4.0531 -1.3033 -2.5100 7 6 5.3740 -1.3385 -2.7758 8 8 6.1582 -0.7986 -2.0247 9 6 5.8764 -2.0489 -4.0063 10 1 5.3952 -1.6547 -4.9014 11 6 5.6499 -3.5747 -3.8891 12 6 6.8920 -4.1257 -4.5691 13 6 7.1988 -5.3760 -5.0587 14 6 8.4275 -5.6027 -5.6553 15 17 8.8183 -7.1767 -6.2744 16 6 9.3421 -4.5693 -5.7571 17 6 9.0369 -3.3175 -5.2648 18 6 7.8044 -3.0827 -4.6599 19 8 7.3064 -1.9419 -4.1079 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8918 1.0404 2.4244 23 6 2.6113 -0.6618 3.5094 24 7 2.9243 -1.9390 3.4503 25 14 2.7890 0.2699 5.1186 26 1 1.5210 0.1786 5.8860 27 1 3.8932 -0.3234 5.9147 28 1 3.0940 1.6952 4.8343 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0726 -0.4259 36 1 3.4258 -1.7349 -3.1111 37 1 5.6092 -3.8835 -2.8445 38 1 4.7461 -3.8763 -4.4185 39 1 6.4815 -6.1793 -4.9769 40 1 10.3000 -4.7437 -6.2246 41 1 9.7562 -2.5164 -5.3487 42 1 2.2490 -1.6317 1.1527 43 1 3.2470 -2.3963 4.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731731285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:19 Heat of formation + Delta-G solvation = -63.331118 kcal Electronic energy + Delta-G solvation = -25768.975126 eV Core-core repulsion = 21839.621078 eV Total energy + Delta-G solvation = -3929.354048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54327 -40.54659 -38.78012 -38.09125 -37.14844 -35.93546 -34.30981 -33.81367 -31.54306 -30.96780 -30.57804 -29.30655 -26.10956 -25.59854 -23.91113 -23.38308 -22.85678 -21.96101 -21.15781 -19.31129 -18.84245 -18.51182 -18.07307 -17.52910 -16.97254 -16.78972 -16.33422 -15.87737 -15.64864 -15.36955 -15.22830 -14.93329 -14.65561 -14.47640 -14.33960 -14.14646 -14.10955 -13.55915 -13.49564 -13.33169 -13.24630 -12.87473 -12.82252 -12.62662 -12.36876 -12.29299 -12.22294 -12.12527 -11.87904 -11.69007 -11.61817 -11.58281 -10.98909 -10.89422 -10.19557 -10.07735 -9.18949 -8.96861 -7.92950 -5.18950 0.01569 0.13607 1.08951 1.38203 1.45452 1.47038 1.53867 1.54708 2.34248 2.54936 2.56941 3.15712 3.33503 3.41584 3.64434 3.75009 3.90007 3.93438 4.01153 4.02494 4.15161 4.23415 4.38050 4.39540 4.61612 4.64465 4.68463 4.77651 4.79255 4.89496 4.91915 5.04334 5.11446 5.12138 5.20259 5.21687 5.31943 5.38906 5.42251 5.54992 5.63992 5.92383 6.30707 6.45514 7.13414 7.36790 8.15528 8.36028 9.30566 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.001999 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.697815 B =14001.229532 C =14495.862634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.698 5.698 7 C 0.508 3.492 8 O -0.577 6.577 9 C 0.069 3.931 10 H 0.156 0.844 11 C -0.091 4.091 12 C -0.166 4.166 13 C -0.059 4.059 14 C -0.072 4.072 15 Cl -0.062 7.062 16 C -0.070 4.070 17 C -0.131 4.131 18 C 0.087 3.913 19 O -0.304 6.304 20 N -0.735 5.735 21 C -0.231 4.231 22 H 0.073 0.927 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.964 3.036 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.272 1.272 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.423 0.577 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.150 0.850 42 H 0.372 0.628 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.409 -27.674 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.352 5.352 7 C 0.294 3.706 8 O -0.456 6.456 9 C 0.010 3.990 10 H 0.173 0.827 11 C -0.128 4.128 12 C -0.167 4.167 13 C -0.077 4.077 14 C -0.099 4.099 15 Cl -0.033 7.033 16 C -0.088 4.088 17 C -0.149 4.149 18 C 0.042 3.958 19 O -0.217 6.217 20 N -0.376 5.376 21 C -0.363 4.363 22 H 0.091 0.909 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.197 1.197 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.105 0.895 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.168 0.832 42 H 0.204 0.796 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.950 -6.784 -27.004 28.472 hybrid contribution 0.136 -0.189 1.365 1.385 sum 6.086 -6.974 -25.640 27.259 Atomic orbital electron populations 1.22259 0.97059 1.01105 1.00853 1.20487 0.93205 0.95233 0.85748 0.94052 1.21917 0.92003 1.02393 0.98954 1.21162 0.95618 0.96176 0.86201 1.45672 1.06334 1.56251 1.26953 1.20667 0.83026 0.80231 0.86706 1.90775 1.56827 1.47116 1.50891 1.23410 0.80415 0.97336 0.97839 0.82669 1.21892 0.98419 0.89935 1.02583 1.20793 0.97831 0.94147 1.03965 1.20323 0.95799 0.95919 0.95668 1.20795 0.96338 0.87959 1.04759 1.98376 1.94018 1.24867 1.86002 1.21018 0.99942 0.89880 0.97991 1.20442 0.95171 0.98702 1.00631 1.20019 0.95948 0.85680 0.94161 1.86936 1.21462 1.36423 1.76909 1.42652 1.78364 1.10258 1.06283 1.19590 1.34155 0.94071 0.88481 0.90864 1.25471 1.03465 0.96891 1.01288 1.69800 1.53052 1.10109 1.29127 0.85260 0.76802 0.78063 0.80435 1.21335 1.22714 1.19717 0.95067 0.90478 0.93517 0.87231 0.90523 0.92964 0.94523 0.73917 0.89513 0.83247 0.82634 0.81759 0.83218 0.79590 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.49 71.98 0.68 -4.06 16 2 C 0.16 5.73 2.89 44.99 0.13 5.86 16 3 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 4 C -0.11 -2.93 4.87 30.59 0.15 -2.78 16 5 C 0.13 4.08 5.56 86.38 0.48 4.56 16 6 N -0.70 -15.59 5.56 -463.07 -2.57 -18.16 16 7 C 0.51 14.23 7.13 87.66 0.62 14.86 16 8 O -0.58 -23.95 16.57 15.22 0.25 -23.70 16 9 C 0.07 1.34 4.04 30.43 0.12 1.46 16 10 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 11 C -0.09 -1.36 6.66 30.83 0.21 -1.15 16 12 C -0.17 -2.95 6.28 -19.43 -0.12 -3.07 16 13 C -0.06 -0.89 9.82 22.20 0.22 -0.67 16 14 C -0.07 -1.10 6.33 22.35 0.14 -0.95 16 15 Cl -0.06 -0.86 28.97 -2.72 -0.08 -0.94 16 16 C -0.07 -1.00 9.81 22.23 0.22 -0.78 16 17 C -0.13 -2.29 10.06 22.45 0.23 -2.07 16 18 C 0.09 1.89 7.04 22.67 0.16 2.05 16 19 O -0.30 -8.09 10.39 -77.19 -0.80 -8.89 16 20 N -0.73 -35.49 4.57 -322.94 -1.48 -36.96 16 21 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 22 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 24 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 25 Si 0.96 47.28 29.55 68.60 2.03 49.31 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 27 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16 36 H 0.42 5.15 8.47 -92.70 -0.79 4.37 16 37 H 0.09 1.61 7.92 -2.39 -0.02 1.59 16 38 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.37 19.41 7.80 -92.70 -0.72 18.69 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.51 380.85 1.71 -77.80 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.46 Total: 24.16 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.54 Total: -2.79 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.77 Total: -114.94 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.55 Total: -32.59 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -79.51 1.71 -77.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731731285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.469 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds