Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46504 * 2 1 4 4 C 1.50693 * 109.47251 * 240.00323 * 2 1 3 5 5 O 1.21287 * 119.99849 * 239.99869 * 4 2 1 6 6 N 1.34782 * 120.00376 * 59.99553 * 4 2 1 7 7 C 1.46498 * 119.99965 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46687 * 180.02562 * 7 6 4 9 9 O 1.42902 * 112.94314 * 53.40865 * 8 7 6 10 10 C 1.53937 * 113.74276 * 281.67199 * 8 7 6 11 11 N 1.47577 * 86.12071 * 222.04937 * 10 8 7 12 12 C 1.36931 * 134.49446 * 204.64007 * 11 10 8 13 13 H 1.08004 * 119.99907 * 180.02562 * 12 11 10 14 14 C 1.38806 * 120.00170 * 0.02562 * 12 11 10 15 15 N 1.31615 * 120.00325 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47185 * 59.99553 * 16 14 12 18 18 H 1.48501 * 109.47479 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46958 * 300.00078 * 16 14 12 20 20 C 1.47585 * 91.01284 * 24.64079 * 11 10 8 21 21 C 1.50696 * 109.47092 * 119.99883 * 2 1 3 22 22 C 1.38244 * 119.98645 * 59.73058 * 21 2 1 23 23 C 1.38211 * 120.01172 * 179.72544 * 22 21 2 24 24 C 1.38353 * 119.98697 * 0.54523 * 23 22 21 25 25 Cl 1.73599 * 120.01444 * 179.74915 * 24 23 22 26 26 C 1.38351 * 119.97491 * 359.72879 * 24 23 22 27 27 C 1.38214 * 119.98636 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47210 * 59.99903 * 1 2 3 29 29 H 1.09001 * 109.46504 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47526 * 299.99935 * 1 2 3 31 31 H 0.97004 * 119.99482 * 0.02562 * 6 4 2 32 32 H 1.08992 * 109.47311 * 60.00333 * 7 6 4 33 33 H 1.08997 * 109.46828 * 299.99977 * 7 6 4 34 34 H 0.96699 * 113.99880 * 309.66135 * 9 8 7 35 35 H 1.09003 * 113.77295 * 336.35252 * 10 8 7 36 36 H 1.09004 * 113.77134 * 107.74894 * 10 8 7 37 37 H 0.96998 * 120.00656 * 179.97438 * 15 14 12 38 38 H 1.09000 * 113.77328 * 221.06020 * 20 11 10 39 39 H 1.09001 * 113.76777 * 89.66417 * 20 11 10 40 40 H 1.08001 * 119.99016 * 359.97438 * 22 21 2 41 41 H 1.07998 * 120.00670 * 180.27293 * 23 22 21 42 42 H 1.07996 * 120.00962 * 179.97438 * 26 24 23 43 43 H 1.08001 * 119.99724 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 6 1.6852 -0.2191 -4.9000 9 8 1.9934 1.1763 -4.9018 10 6 0.2173 -0.5325 -5.2415 11 7 0.6653 -0.6100 -6.6455 12 6 0.0520 -0.4470 -7.8589 13 1 0.6197 -0.5614 -8.7706 14 6 -1.2992 -0.1348 -7.9173 15 7 -1.9912 0.0042 -6.8064 16 14 -2.1358 0.0883 -9.5726 17 1 -2.0235 -1.1675 -10.3572 18 1 -3.5694 0.4140 -9.3629 19 1 -1.4794 1.1953 -10.3137 20 6 2.0398 -0.9338 -6.2166 21 6 2.0324 -0.7104 1.2304 22 6 1.6936 -2.0323 1.4518 23 6 2.1587 -2.6860 2.5772 24 6 2.9541 -2.0138 3.4881 25 17 3.5333 -2.8323 4.9053 26 6 3.2881 -0.6893 3.2690 27 6 2.8275 -0.0384 2.1400 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.1493 0.5390 -2.5436 32 1 1.8310 -1.9683 -3.6506 33 1 3.2847 -0.9411 -3.6508 34 1 1.7453 1.6350 -4.0875 35 1 -0.1341 -1.4827 -4.8394 36 1 -0.4659 0.2934 -5.0434 37 1 -2.9353 0.2228 -6.8471 38 1 2.8118 -0.4284 -6.7968 39 1 2.2237 -2.0020 -6.1009 40 1 1.0688 -2.5554 0.7430 41 1 1.8976 -3.7199 2.7478 42 1 3.9086 -0.1639 3.9799 43 1 3.0885 0.9955 1.9686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733504976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = -11.261197 kcal Electronic energy + Delta-G solvation = -26395.120743 eV Core-core repulsion = 22468.024617 eV Total energy + Delta-G solvation = -3927.096127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56579 -39.34353 -38.49338 -36.75767 -34.94842 -34.34753 -33.94867 -32.00995 -31.33786 -29.70489 -28.42274 -26.17053 -25.07682 -24.69159 -23.12198 -22.39649 -21.58310 -20.18018 -19.35085 -17.81498 -17.34970 -16.75328 -16.41309 -15.86486 -15.68668 -15.28738 -15.03340 -14.71966 -14.19583 -14.09120 -14.00970 -13.75597 -13.66845 -13.42885 -13.30930 -12.81565 -12.73527 -12.52802 -12.29239 -12.11511 -11.80232 -11.72555 -11.46741 -11.36286 -11.09687 -11.04403 -10.95179 -10.77011 -10.48283 -10.03687 -9.72960 -9.54457 -9.28200 -9.23823 -8.97638 -8.85316 -8.82376 -6.93575 -5.80607 -3.12239 0.85605 1.06995 1.87135 2.58492 3.04555 3.38411 3.42162 3.43184 3.46958 4.23744 4.40045 4.41209 4.47346 4.62014 4.67456 4.83160 4.89691 5.00305 5.08119 5.17777 5.18735 5.24380 5.38644 5.45732 5.52438 5.55485 5.69099 5.71323 5.84105 5.93729 5.99265 6.01249 6.25695 6.27663 6.36992 6.49193 6.52683 6.53031 6.96549 7.12121 7.42547 7.46076 7.92720 8.06889 8.18308 9.00486 9.66789 10.52588 11.36759 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001998 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.845760 B =14008.556447 C =14193.182323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.107 0.893 4 C 0.517 3.483 5 O -0.533 6.533 6 N -0.722 5.722 7 C 0.103 3.897 8 C 0.063 3.937 9 O -0.526 6.526 10 C 0.145 3.855 11 N -0.602 5.602 12 C -0.219 4.219 13 H 0.081 0.919 14 C -0.008 4.008 15 N -0.924 5.924 16 Si 0.914 3.086 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.135 3.865 21 C -0.059 4.059 22 C -0.071 4.071 23 C -0.111 4.111 24 C -0.035 4.035 25 Cl -0.077 7.077 26 C -0.114 4.114 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.361 0.639 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 0.487 22.394 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.125 0.875 4 C 0.302 3.698 5 O -0.409 6.409 6 N -0.374 5.374 7 C -0.021 4.021 8 C 0.021 3.979 9 O -0.329 6.329 10 C 0.019 3.981 11 N -0.328 5.328 12 C -0.346 4.346 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.571 5.571 16 Si 0.744 3.256 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.009 3.991 21 C -0.060 4.060 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.061 4.061 25 Cl -0.049 7.049 26 C -0.133 4.133 27 C -0.118 4.118 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.102 -0.385 21.734 23.198 hybrid contribution -0.923 0.409 -0.276 1.047 sum 7.178 0.024 21.458 22.627 Atomic orbital electron populations 1.21839 0.91412 1.03518 1.03394 1.20333 0.98145 1.00337 0.90655 0.87461 1.20379 0.80321 0.84740 0.84316 1.90732 1.37521 1.26043 1.86617 1.45927 1.53579 1.32232 1.05702 1.22051 0.99539 0.97210 0.83335 1.23757 0.99199 0.81942 0.93042 1.86630 1.84995 1.19745 1.41535 1.22886 0.91368 0.99350 0.84477 1.45649 1.04355 1.81046 1.01733 1.18950 0.92059 1.40788 0.82834 0.90168 1.24762 0.96180 1.02171 0.97347 1.69777 1.07810 1.54358 1.25181 0.86168 0.78485 0.78027 0.82887 1.21170 1.21558 1.21041 1.22557 0.90547 0.96043 0.89970 1.19431 0.97426 0.94362 0.94773 1.20919 0.98496 0.93753 0.95746 1.21027 0.97743 1.00423 0.93797 1.20932 1.00930 0.93695 0.90576 1.98366 1.87839 1.79204 1.39452 1.20959 1.00946 0.92851 0.98507 1.20973 0.97144 1.00121 0.93573 0.91020 0.91584 0.91060 0.76651 0.90293 0.91165 0.79314 0.94883 0.90400 0.93635 0.92657 0.93247 0.85170 0.84988 0.85014 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.90 37.16 0.33 -0.74 16 2 C -0.07 -0.63 2.90 -92.93 -0.27 -0.90 16 3 H 0.11 0.68 7.88 -51.93 -0.41 0.28 16 4 C 0.52 6.25 7.03 -10.99 -0.08 6.18 16 5 O -0.53 -8.46 15.13 5.55 0.08 -8.37 16 6 N -0.72 -8.42 5.23 -60.30 -0.32 -8.74 16 7 C 0.10 1.49 5.28 -4.04 -0.02 1.47 16 8 C 0.06 1.11 1.52 -89.69 -0.14 0.98 16 9 O -0.53 -9.16 13.51 -35.23 -0.48 -9.64 16 10 C 0.15 3.20 6.92 -2.98 -0.02 3.18 16 11 N -0.60 -15.26 3.70 -177.81 -0.66 -15.92 16 12 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 13 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 15 N -0.92 -26.83 11.38 55.49 0.63 -26.20 16 16 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.14 2.74 8.34 -2.97 -0.02 2.72 16 21 C -0.06 -0.58 4.39 -104.62 -0.46 -1.04 16 22 C -0.07 -0.74 7.94 -39.59 -0.31 -1.05 16 23 C -0.11 -1.11 9.83 -39.55 -0.39 -1.49 16 24 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 25 Cl -0.08 -0.70 28.96 -51.86 -1.50 -2.21 16 26 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 27 C -0.10 -0.85 9.67 -39.59 -0.38 -1.24 16 28 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 29 H 0.07 0.55 7.37 -51.93 -0.38 0.16 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 3.81 6.73 -40.82 -0.27 3.53 16 32 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.36 4.55 7.61 45.56 0.35 4.89 16 35 H 0.03 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.08 1.89 7.15 -51.93 -0.37 1.52 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.13 1.36 7.51 -52.49 -0.39 0.96 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.81 7.95 -52.49 -0.42 0.39 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -34.26 374.46 -9.49 -43.74 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.21 Total: 5.22 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.66 Total: -0.56 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.34 Total: -50.85 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.39 Total: -18.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.26 -9.49 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733504976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.481 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds