Wall clock time and date at job start Tue Mar 31 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46504 * 2 1 4 4 C 1.50693 * 109.47251 * 240.00323 * 2 1 3 5 5 O 1.21287 * 119.99849 * 239.99869 * 4 2 1 6 6 N 1.34782 * 120.00376 * 59.99553 * 4 2 1 7 7 C 1.46498 * 119.99965 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46687 * 180.02562 * 7 6 4 9 9 O 1.42902 * 112.94314 * 53.40865 * 8 7 6 10 10 C 1.53937 * 113.74276 * 281.67199 * 8 7 6 11 11 N 1.47577 * 86.12071 * 222.04937 * 10 8 7 12 12 C 1.36931 * 134.49446 * 204.64007 * 11 10 8 13 13 H 1.08004 * 119.99907 * 180.02562 * 12 11 10 14 14 C 1.38806 * 120.00170 * 0.02562 * 12 11 10 15 15 N 1.31615 * 120.00325 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47185 * 59.99553 * 16 14 12 18 18 H 1.48501 * 109.47479 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46958 * 300.00078 * 16 14 12 20 20 C 1.47585 * 91.01284 * 24.64079 * 11 10 8 21 21 C 1.50696 * 109.47092 * 119.99883 * 2 1 3 22 22 C 1.38244 * 119.98645 * 59.73058 * 21 2 1 23 23 C 1.38211 * 120.01172 * 179.72544 * 22 21 2 24 24 C 1.38353 * 119.98697 * 0.54523 * 23 22 21 25 25 Cl 1.73599 * 120.01444 * 179.74915 * 24 23 22 26 26 C 1.38351 * 119.97491 * 359.72879 * 24 23 22 27 27 C 1.38214 * 119.98636 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47210 * 59.99903 * 1 2 3 29 29 H 1.09001 * 109.46504 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47526 * 299.99935 * 1 2 3 31 31 H 0.97004 * 119.99482 * 0.02562 * 6 4 2 32 32 H 1.08992 * 109.47311 * 60.00333 * 7 6 4 33 33 H 1.08997 * 109.46828 * 299.99977 * 7 6 4 34 34 H 0.96699 * 113.99880 * 309.66135 * 9 8 7 35 35 H 1.09003 * 113.77295 * 336.35252 * 10 8 7 36 36 H 1.09004 * 113.77134 * 107.74894 * 10 8 7 37 37 H 0.96998 * 120.00656 * 179.97438 * 15 14 12 38 38 H 1.09000 * 113.77328 * 221.06020 * 20 11 10 39 39 H 1.09001 * 113.76777 * 89.66417 * 20 11 10 40 40 H 1.08001 * 119.99016 * 359.97438 * 22 21 2 41 41 H 1.07998 * 120.00670 * 180.27293 * 23 22 21 42 42 H 1.07996 * 120.00962 * 179.97438 * 26 24 23 43 43 H 1.08001 * 119.99724 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 6 1.6852 -0.2191 -4.9000 9 8 1.9934 1.1763 -4.9018 10 6 0.2173 -0.5325 -5.2415 11 7 0.6653 -0.6100 -6.6455 12 6 0.0520 -0.4470 -7.8589 13 1 0.6197 -0.5614 -8.7706 14 6 -1.2992 -0.1348 -7.9173 15 7 -1.9912 0.0042 -6.8064 16 14 -2.1358 0.0883 -9.5726 17 1 -2.0235 -1.1675 -10.3572 18 1 -3.5694 0.4140 -9.3629 19 1 -1.4794 1.1953 -10.3137 20 6 2.0398 -0.9338 -6.2166 21 6 2.0324 -0.7104 1.2304 22 6 1.6936 -2.0323 1.4518 23 6 2.1587 -2.6860 2.5772 24 6 2.9541 -2.0138 3.4881 25 17 3.5333 -2.8323 4.9053 26 6 3.2881 -0.6893 3.2690 27 6 2.8275 -0.0384 2.1400 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.1493 0.5390 -2.5436 32 1 1.8310 -1.9683 -3.6506 33 1 3.2847 -0.9411 -3.6508 34 1 1.7453 1.6350 -4.0875 35 1 -0.1341 -1.4827 -4.8394 36 1 -0.4659 0.2934 -5.0434 37 1 -2.9353 0.2228 -6.8471 38 1 2.8118 -0.4284 -6.7968 39 1 2.2237 -2.0020 -6.1009 40 1 1.0688 -2.5554 0.7430 41 1 1.8976 -3.7199 2.7478 42 1 3.9086 -0.1639 3.9799 43 1 3.0885 0.9955 1.9686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733504976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:58 Heat of formation + Delta-G solvation = -35.033086 kcal Electronic energy + Delta-G solvation = -26396.151570 eV Core-core repulsion = 22468.024617 eV Total energy + Delta-G solvation = -3928.126953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49703 -40.56042 -39.59592 -37.47746 -36.47976 -35.33949 -34.89637 -33.98892 -32.01820 -30.64947 -29.80934 -27.72185 -26.74067 -25.55370 -23.94464 -23.73997 -22.66711 -21.19015 -20.82769 -19.00642 -18.49233 -18.08662 -17.41804 -17.19629 -16.75703 -16.49240 -16.08144 -15.91492 -15.75106 -15.37155 -14.98278 -14.80635 -14.61364 -14.48186 -14.36320 -14.21064 -13.89324 -13.60598 -13.37826 -13.19994 -12.96088 -12.80846 -12.76326 -12.53335 -12.44337 -12.26041 -12.16798 -12.01730 -11.76361 -11.72933 -11.40737 -10.95983 -10.76746 -10.70377 -10.11320 -9.94251 -9.53999 -8.93120 -7.91073 -5.23443 0.14259 0.37945 1.16487 1.45550 1.48720 1.54526 1.64389 2.10442 2.46704 2.72277 3.07023 3.28766 3.35773 3.53454 3.58436 3.74867 3.91666 3.95552 3.97637 4.18075 4.28072 4.39856 4.42903 4.53161 4.69040 4.72394 4.78779 4.79342 4.86834 4.92795 4.97033 5.03203 5.17610 5.23152 5.27630 5.32349 5.32747 5.36376 5.50307 5.58312 5.85291 5.92986 6.49552 6.85998 6.92225 7.23107 7.59367 8.52867 9.25343 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001998 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.845760 B =14008.556447 C =14193.182323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.140 0.860 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.715 5.715 7 C 0.120 3.880 8 C 0.100 3.900 9 O -0.540 6.540 10 C 0.145 3.855 11 N -0.636 5.636 12 C -0.235 4.235 13 H 0.080 0.920 14 C -0.066 4.066 15 N -0.951 5.951 16 Si 0.979 3.021 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.127 3.873 21 C -0.071 4.071 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.046 4.046 25 Cl -0.076 7.076 26 C -0.117 4.117 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.384 0.616 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 1.851 23.202 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 H 0.158 0.842 4 C 0.305 3.695 5 O -0.451 6.451 6 N -0.368 5.368 7 C -0.006 4.006 8 C 0.057 3.943 9 O -0.346 6.346 10 C 0.019 3.981 11 N -0.363 5.363 12 C -0.363 4.363 13 H 0.098 0.902 14 C -0.259 4.259 15 N -0.599 5.599 16 Si 0.807 3.193 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.002 3.998 21 C -0.071 4.071 22 C -0.105 4.105 23 C -0.142 4.142 24 C -0.073 4.073 25 Cl -0.048 7.048 26 C -0.135 4.135 27 C -0.116 4.116 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.938 0.998 22.566 24.292 hybrid contribution -1.123 -0.032 -0.489 1.225 sum 7.816 0.967 22.077 23.440 Atomic orbital electron populations 1.21852 0.90566 1.03028 1.04558 1.20358 0.98656 1.01230 0.88173 0.84222 1.20990 0.79357 0.84184 0.84994 1.90722 1.39391 1.27856 1.87146 1.45812 1.53595 1.32416 1.04956 1.21676 0.99673 0.96371 0.82863 1.23099 0.95406 0.82341 0.93422 1.86580 1.84789 1.19619 1.43633 1.22831 0.93728 0.97998 0.83509 1.46046 1.06666 1.81520 1.02022 1.19320 0.92609 1.40119 0.84268 0.90191 1.25581 0.96882 1.02675 1.00731 1.69948 1.07582 1.55516 1.26886 0.85158 0.77048 0.78107 0.79035 1.20482 1.21779 1.20397 1.22801 0.88354 0.97491 0.91182 1.19627 0.97822 0.94195 0.95474 1.20971 0.99079 0.94562 0.95911 1.21143 0.98193 1.00873 0.94036 1.21093 1.01175 0.94336 0.90674 1.98362 1.87792 1.79305 1.39298 1.21266 1.00781 0.92498 0.98996 1.21310 0.96045 1.01376 0.92844 0.90391 0.92973 0.89338 0.75217 0.91171 0.90461 0.76713 0.95698 0.93012 0.94194 0.92536 0.91267 0.86144 0.84593 0.83109 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.90 71.98 0.64 -1.20 16 2 C -0.06 -0.94 2.90 -12.29 -0.04 -0.97 16 3 H 0.14 1.19 7.88 -2.39 -0.02 1.17 16 4 C 0.52 11.65 7.03 87.65 0.62 12.26 16 5 O -0.57 -17.69 15.13 -3.05 -0.05 -17.74 16 6 N -0.71 -15.32 5.23 -463.06 -2.42 -17.74 16 7 C 0.12 3.27 5.28 86.38 0.46 3.73 16 8 C 0.10 3.41 1.52 -10.13 -0.02 3.39 16 9 O -0.54 -17.84 13.51 -148.98 -2.01 -19.85 16 10 C 0.14 6.44 6.92 86.48 0.60 7.04 16 11 N -0.64 -32.43 3.70 -720.28 -2.66 -35.09 16 12 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 13 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 14 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 15 N -0.95 -56.08 11.38 21.65 0.25 -55.84 16 16 Si 0.98 45.60 29.55 68.60 2.03 47.62 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 C 0.13 5.05 8.34 86.48 0.72 5.78 16 21 C -0.07 -1.25 4.39 -19.86 -0.09 -1.33 16 22 C -0.09 -1.79 7.94 22.26 0.18 -1.62 16 23 C -0.12 -2.45 9.83 22.29 0.22 -2.23 16 24 C -0.05 -0.86 6.32 22.32 0.14 -0.72 16 25 Cl -0.08 -1.33 28.96 -2.72 -0.08 -1.41 16 26 C -0.12 -1.81 9.83 22.29 0.22 -1.59 16 27 C -0.10 -1.41 9.67 22.27 0.22 -1.19 16 28 H 0.08 0.91 7.56 -2.39 -0.02 0.89 16 29 H 0.05 0.83 7.37 -2.39 -0.02 0.81 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.41 6.88 6.73 -92.71 -0.62 6.26 16 32 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.38 8.71 7.61 -74.06 -0.56 8.14 16 35 H 0.03 1.15 8.03 -2.39 -0.02 1.13 16 36 H 0.05 2.56 7.15 -2.39 -0.02 2.54 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 40 H 0.12 2.61 7.51 -2.91 -0.02 2.59 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 43 H 0.16 1.29 7.95 -2.91 -0.02 1.27 16 Total: -1.00 -74.68 374.46 0.14 -74.53 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.14 Total: 19.79 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.23 Total: 5.71 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.84 Total: -108.67 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -2.06 Total: -37.58 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -74.68 0.14 -74.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733504976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.499 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds