Wall clock time and date at job start Tue Mar 31 2020 20:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.65859 * 2 1 4 4 C 1.54947 * 110.73536 * 236.61051 * 2 1 3 5 5 N 1.48386 * 103.37296 * 204.38956 * 4 2 1 6 6 C 1.34776 * 127.17094 * 219.23915 * 5 4 2 7 7 O 1.21683 * 119.99921 * 355.95641 * 6 5 4 8 8 C 1.46679 * 119.99906 * 175.96171 * 6 5 4 9 9 C 1.35667 * 126.13162 * 186.35719 * 8 6 5 10 10 N 1.30934 * 114.19070 * 179.97438 * 9 8 6 11 11 C 1.29428 * 117.36875 * 0.02562 * 10 9 8 12 12 S 1.70954 * 110.39040 * 359.71827 * 11 10 9 13 13 C 1.47488 * 105.79200 * 39.06887 * 5 4 2 14 14 C 1.54000 * 107.24998 * 334.78128 * 13 5 4 15 15 H 1.08999 * 110.32705 * 242.31989 * 14 13 5 16 16 N 1.46896 * 110.32767 * 120.10205 * 14 13 5 17 17 C 1.46896 * 110.99989 * 86.45326 * 16 14 13 18 18 C 1.50704 * 109.47237 * 179.97438 * 17 16 14 19 19 O 1.21298 * 119.99696 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00266 * 179.97438 * 18 17 16 21 21 C 1.37090 * 119.99958 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00343 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99743 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00069 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99954 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47685 * 120.00027 * 25 23 21 28 28 H 1.48501 * 109.47573 * 240.00070 * 25 23 21 29 29 H 1.08998 * 109.46713 * 296.80611 * 1 2 3 30 30 H 1.08997 * 109.46723 * 56.80093 * 1 2 3 31 31 H 1.08994 * 109.47192 * 176.80300 * 1 2 3 32 32 H 1.08994 * 110.66567 * 322.73463 * 4 2 1 33 33 H 1.09001 * 110.65582 * 85.84745 * 4 2 1 34 34 H 1.07997 * 122.89895 * 0.03813 * 9 8 6 35 35 H 1.08001 * 124.80941 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.91234 * 215.32285 * 13 5 4 37 37 H 1.09001 * 109.91506 * 94.24205 * 13 5 4 38 38 H 1.00902 * 110.99987 * 322.49963 * 16 14 13 39 39 H 1.09000 * 109.47599 * 300.00074 * 17 16 14 40 40 H 1.09004 * 109.47360 * 60.00501 * 17 16 14 41 41 H 0.97004 * 119.99519 * 359.97438 * 20 18 17 42 42 H 0.96995 * 120.00097 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0787 -0.7975 -1.2099 5 7 3.4298 -1.2157 -0.7612 6 6 4.5563 -1.2582 -1.4999 7 8 4.5145 -1.0009 -2.6885 8 6 5.8326 -1.6148 -0.8711 9 6 7.0532 -1.5791 -1.4623 10 7 8.0382 -1.9469 -0.6821 11 6 7.7406 -2.2928 0.5291 12 16 6.0563 -2.1592 0.7899 13 6 3.2874 -1.5719 0.6629 14 6 2.0775 -0.7917 1.2100 15 1 2.3928 -0.1083 1.9984 16 7 1.0579 -1.7204 1.7158 17 6 1.3242 -2.0840 3.1139 18 6 0.2596 -3.0349 3.5972 19 8 -0.6328 -3.3766 2.8501 20 7 0.2998 -3.5066 4.8591 21 6 -0.6683 -4.3721 5.2985 22 1 -1.4630 -4.6763 4.6334 23 6 -0.6272 -4.8579 6.5997 24 7 0.3394 -4.4874 7.4092 25 14 -1.9459 -6.0378 7.1982 26 1 -2.9136 -6.2963 6.1018 27 1 -1.3150 -7.3167 7.6125 28 1 -2.6574 -5.4390 8.3560 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5627 -0.8599 31 1 -0.3633 -1.0260 -0.0573 32 1 1.4558 -1.6692 -1.4104 33 1 2.1457 -0.1604 -2.0918 34 1 7.1996 -1.2728 -2.4875 35 1 8.4556 -2.6150 1.2716 36 1 4.1883 -1.2899 1.2080 37 1 3.1139 -2.6434 0.7621 38 1 0.9969 -2.5424 1.1338 39 1 2.3002 -2.5641 3.1850 40 1 1.3154 -1.1855 3.7310 41 1 1.0141 -3.2342 5.4562 42 1 0.3683 -4.8268 8.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733838629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:19 Heat of formation + Delta-G solvation = -30.802456 kcal Electronic energy + Delta-G solvation = -26537.294619 eV Core-core repulsion = 22643.687578 eV Total energy + Delta-G solvation = -3893.607042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53939 -40.67817 -40.01353 -39.00509 -36.10716 -35.43831 -33.76229 -33.18084 -31.67544 -30.11057 -28.12173 -27.67091 -26.53806 -25.69698 -24.18857 -22.46114 -21.12277 -20.84432 -20.53985 -19.88528 -19.48168 -17.92278 -17.73327 -17.39732 -17.12297 -16.76735 -16.34141 -16.14660 -15.75539 -15.53308 -15.34681 -15.09916 -15.06145 -14.93096 -14.58033 -14.10888 -13.88486 -13.72374 -13.48111 -13.36868 -13.08800 -12.93635 -12.80304 -12.58265 -12.36772 -12.26741 -12.10417 -11.66437 -11.59751 -11.48428 -11.46391 -10.72206 -10.64207 -10.28270 -10.25109 -9.96190 -9.85022 -9.30792 -8.43540 -5.90871 -0.84223 0.12684 0.52609 1.32270 1.38355 1.44468 1.57289 1.65588 2.00008 2.11893 2.31314 2.89949 3.14780 3.24979 3.37157 3.39008 3.63619 3.73677 3.94967 4.04618 4.09501 4.25168 4.29527 4.36559 4.38875 4.56907 4.63716 4.67505 4.71572 4.78078 4.83568 4.95636 5.04328 5.22760 5.31506 5.45379 5.69818 5.91863 6.13024 6.17427 6.37074 6.51876 6.65096 6.78606 7.17914 7.62753 8.18308 8.73880 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002691 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.492595 B =10400.897356 C =11998.464384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 H 0.099 0.901 4 C 0.107 3.893 5 N -0.613 5.613 6 C 0.612 3.388 7 O -0.567 6.567 8 C -0.319 4.319 9 C 0.114 3.886 10 N -0.505 5.505 11 C 0.024 3.976 12 S 0.230 5.770 13 C 0.062 3.938 14 C 0.087 3.913 15 H 0.118 0.882 16 N -0.658 5.658 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.987 3.013 26 H -0.275 1.275 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.185 0.815 35 H 0.239 0.761 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.346 0.654 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.397 0.603 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 8.927 -9.601 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.104 4.104 3 H 0.117 0.883 4 C -0.014 4.014 5 N -0.345 5.345 6 C 0.401 3.599 7 O -0.449 6.449 8 C -0.444 4.444 9 C -0.045 4.045 10 N -0.219 5.219 11 C -0.269 4.269 12 S 0.486 5.514 13 C -0.064 4.064 14 C -0.024 4.024 15 H 0.136 0.864 16 N -0.290 5.290 17 C -0.071 4.071 18 C 0.227 3.773 19 O -0.509 6.509 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.811 3.189 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.202 0.798 35 H 0.255 0.745 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.166 0.834 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.231 0.769 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.677 9.028 -9.628 18.300 hybrid contribution 0.674 -1.027 -0.330 1.272 sum 13.350 8.001 -9.958 18.478 Atomic orbital electron populations 1.21352 0.92611 1.02087 1.01333 1.22292 0.97309 0.98899 0.91880 0.88270 1.22799 0.80670 0.99290 0.98644 1.48660 1.08610 1.65308 1.11968 1.16533 0.81648 0.76759 0.84998 1.90818 1.86102 1.52395 1.15563 1.25658 0.98624 1.19301 1.00782 1.22331 0.85370 0.95403 1.01350 1.66400 1.35229 1.15751 1.04504 1.29796 1.01453 0.98648 0.97002 1.84212 1.04241 1.56805 1.06125 1.23436 1.01174 1.00826 0.80916 1.22584 0.87460 0.94444 0.97960 0.86362 1.60232 1.46784 1.20340 1.01621 1.21650 0.95402 0.98703 0.91308 1.20936 0.88936 0.85120 0.82351 1.90514 1.40210 1.63807 1.56409 1.41925 1.26104 1.41573 1.11579 1.19646 1.06525 1.22722 0.96992 0.90507 1.25934 0.99847 0.99738 0.95589 1.69658 1.33106 1.45512 1.07751 0.84955 0.77951 0.77934 0.78036 1.19947 1.19772 1.19812 0.92501 0.92453 0.92983 0.90511 0.89837 0.79774 0.74522 0.88983 0.90403 0.83414 0.90835 0.87106 0.76884 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.52 71.98 0.61 -1.64 16 2 C -0.08 -1.42 3.64 -9.57 -0.03 -1.45 16 3 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.11 2.09 6.52 86.68 0.57 2.65 16 5 N -0.61 -12.70 3.30 -813.38 -2.69 -15.38 16 6 C 0.61 15.18 7.86 86.45 0.68 15.86 16 7 O -0.57 -17.87 17.13 -4.29 -0.07 -17.94 16 8 C -0.32 -6.57 6.40 23.88 0.15 -6.42 16 9 C 0.11 2.36 11.10 84.23 0.93 3.30 16 10 N -0.51 -9.67 10.51 -202.57 -2.13 -11.80 16 11 C 0.02 0.31 12.22 130.60 1.60 1.91 16 12 S 0.23 3.11 18.90 -56.49 -1.07 2.04 16 13 C 0.06 1.04 5.42 86.53 0.47 1.51 16 14 C 0.09 1.49 3.18 45.81 0.15 1.64 16 15 H 0.12 1.63 7.86 -2.39 -0.02 1.61 16 16 N -0.66 -16.12 4.17 -490.99 -2.05 -18.17 16 17 C 0.06 1.68 6.00 85.56 0.51 2.20 16 18 C 0.44 18.74 7.82 87.66 0.69 19.43 16 19 O -0.62 -31.92 15.78 -3.09 -0.05 -31.97 16 20 N -0.57 -27.24 5.29 -306.97 -1.62 -28.86 16 21 C -0.33 -17.83 9.68 84.04 0.81 -17.01 16 22 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -47.45 13.05 21.66 0.28 -47.17 16 25 Si 0.99 41.59 29.55 68.60 2.03 43.62 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.23 7.40 -2.39 -0.02 1.21 16 32 H 0.08 1.55 8.02 -2.39 -0.02 1.53 16 33 H 0.08 1.70 7.90 -2.39 -0.02 1.68 16 34 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.24 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.09 1.26 4.90 -16.51 -0.08 1.18 16 37 H 0.08 1.38 7.60 -2.39 -0.02 1.36 16 38 H 0.35 9.41 7.91 -89.69 -0.71 8.70 16 39 H 0.07 1.63 8.11 -2.39 -0.02 1.62 16 40 H 0.11 2.63 8.08 -2.39 -0.02 2.61 16 41 H 0.40 17.69 7.90 -92.70 -0.73 16.96 16 42 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -71.48 364.55 -0.20 -71.68 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.43 Total: 32.10 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.60 Total: 21.85 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -8.20 Total: -121.38 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.12 Total: -49.91 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.07 Total: 2.04 kcal Total: -71.48 -0.20 -71.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733838629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.874 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds