Wall clock time and date at job start Tue Mar 31 2020 20:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47012 * 2 1 4 4 N 1.46505 * 109.47006 * 240.00788 * 2 1 3 5 5 C 1.34774 * 119.99867 * 84.99730 * 4 2 1 6 6 O 1.21624 * 120.00482 * 359.97438 * 5 4 2 7 7 C 1.47108 * 119.99656 * 180.28012 * 5 4 2 8 8 C 1.38384 * 127.99713 * 179.43096 * 7 5 4 9 9 C 1.37571 * 111.26360 * 179.88420 * 8 7 5 10 10 N 1.29560 * 117.95044 * 0.42765 * 9 8 7 11 11 S 1.56305 * 110.37668 * 359.75976 * 10 9 8 12 12 C 1.53001 * 109.47295 * 120.00703 * 2 1 3 13 13 C 1.53931 * 113.73183 * 281.86711 * 12 2 1 14 14 N 1.48184 * 86.10128 * 221.95868 * 13 12 2 15 15 C 1.46904 * 111.06942 * 137.52529 * 14 13 12 16 16 C 1.50697 * 109.47238 * 90.56556 * 15 14 13 17 17 O 1.21296 * 119.99895 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00088 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00348 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00161 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00258 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47277 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47062 * 119.99851 * 23 21 19 26 26 H 1.48503 * 109.46798 * 239.99391 * 23 21 19 27 27 C 1.47956 * 90.79713 * 24.60318 * 14 13 12 28 28 H 1.09002 * 109.47019 * 300.09182 * 1 2 3 29 29 H 1.08996 * 109.47259 * 60.08538 * 1 2 3 30 30 H 1.08997 * 109.47027 * 180.09088 * 1 2 3 31 31 H 0.96998 * 119.99624 * 265.00017 * 4 2 1 32 32 H 1.07999 * 124.36628 * 0.02964 * 8 7 5 33 33 H 1.08006 * 121.02623 * 180.18695 * 9 8 7 34 34 H 1.09002 * 112.93448 * 53.43851 * 12 2 1 35 35 H 1.09001 * 113.76376 * 336.24824 * 13 12 2 36 36 H 1.09005 * 113.75435 * 107.60496 * 13 12 2 37 37 H 1.09001 * 109.47070 * 210.56483 * 15 14 13 38 38 H 1.09000 * 109.46874 * 330.56495 * 15 14 13 39 39 H 0.96997 * 119.99916 * 0.02562 * 18 16 15 40 40 H 0.96994 * 120.00279 * 180.02562 * 22 21 19 41 41 H 1.09005 * 113.75711 * 221.08512 * 27 14 13 42 42 H 1.09001 * 113.76234 * 89.72171 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8572 1.1620 -2.4118 7 6 2.6314 -0.7128 -3.5599 8 6 2.8147 -0.1922 -4.8289 9 6 3.2864 -1.1491 -5.6975 10 7 3.4766 -2.3454 -5.2379 11 16 3.1078 -2.4106 -3.7204 12 6 2.0401 -0.7214 1.2492 13 6 1.9734 0.1324 2.5282 14 7 3.3110 -0.4205 2.8458 15 6 4.2040 0.6234 3.3663 16 6 4.0865 0.6823 4.8675 17 8 3.3327 -0.0710 5.4469 18 7 4.8191 1.5718 5.5664 19 6 4.7126 1.6250 6.9322 20 1 4.0420 0.9538 7.4482 21 6 5.4674 2.5425 7.6527 22 7 6.2838 3.3589 7.0250 23 14 5.3229 2.6146 9.5137 24 1 4.3433 1.5978 9.9739 25 1 6.6480 2.3379 10.1242 26 1 4.8621 3.9658 9.9224 27 6 3.5700 -0.6730 1.4111 28 1 -0.3633 0.5153 0.8892 29 1 -0.3633 0.5125 -0.8907 30 1 -0.3633 -1.0276 0.0016 31 1 2.2490 -1.6316 -1.1528 32 1 2.6155 0.8337 -5.1016 33 1 3.4881 -0.9114 -6.7315 34 1 1.6179 -1.7196 1.3653 35 1 1.9752 1.2061 2.3403 36 1 1.1926 -0.1776 3.2229 37 1 5.2329 0.3917 3.0912 38 1 3.9226 1.5870 2.9417 39 1 5.4216 2.1744 5.1031 40 1 6.8110 3.9992 7.5280 41 1 4.0628 -1.6253 1.2148 42 1 4.0400 0.1646 0.8956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734117657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:18 Heat of formation + Delta-G solvation = 11.436497 kcal Electronic energy + Delta-G solvation = -25810.876363 eV Core-core repulsion = 21919.100940 eV Total energy + Delta-G solvation = -3891.775423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69512 -39.90909 -39.14079 -37.75326 -35.55941 -33.86567 -32.48867 -31.37940 -31.08298 -29.49650 -26.71913 -25.93586 -25.77768 -24.21835 -22.94697 -21.34330 -20.72232 -19.81507 -19.22082 -18.85243 -17.88126 -17.39808 -16.60714 -16.02690 -15.81342 -15.62570 -15.47563 -14.91749 -14.68667 -14.60457 -14.30391 -14.01505 -13.77222 -13.73442 -13.51138 -13.01395 -12.75385 -12.59826 -12.33695 -12.04843 -11.82110 -11.56656 -11.33788 -11.26685 -11.10162 -10.96741 -10.89923 -10.61991 -10.40491 -10.32919 -10.20364 -10.19685 -9.52395 -9.49034 -9.32713 -8.72186 -8.15842 -7.93831 -6.39648 -3.80315 -0.19290 0.77979 1.37363 1.73829 2.58866 2.69267 3.17496 3.27766 3.35104 3.86946 3.94249 4.12929 4.22140 4.33968 4.47815 4.49721 4.61785 4.90510 5.01562 5.07076 5.16045 5.18341 5.23899 5.32786 5.38188 5.42223 5.45423 5.64096 5.67700 5.69061 5.74207 5.89051 5.96101 5.98190 6.07160 6.21712 6.29137 6.57335 7.00714 7.16303 7.57291 7.70577 8.08570 8.64496 9.20781 9.57265 10.09608 10.78355 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.001899 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.910111 B =14737.728441 C =14988.323013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.093 0.907 4 N -0.715 5.715 5 C 0.597 3.403 6 O -0.521 6.521 7 C -0.269 4.269 8 C -0.109 4.109 9 C 0.058 3.942 10 N -0.518 5.518 11 S 0.421 5.579 12 C -0.128 4.128 13 C 0.024 3.976 14 N -0.448 5.448 15 C 0.010 3.990 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.020 3.980 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.391 0.609 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 -8.260 -25.165 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.366 5.366 5 C 0.382 3.618 6 O -0.397 6.397 7 C -0.403 4.403 8 C -0.145 4.145 9 C -0.134 4.134 10 N -0.347 5.347 11 S 0.575 5.425 12 C -0.147 4.147 13 C -0.105 4.105 14 N -0.170 5.170 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.126 4.126 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.365 -10.407 -23.820 27.017 hybrid contribution 0.392 2.580 -0.655 2.691 sum -6.972 -7.827 -24.475 26.625 Atomic orbital electron populations 1.22152 0.94506 1.02489 1.02951 1.21163 0.94600 0.97239 0.82311 0.88893 1.45919 1.67211 1.13956 1.09476 1.16716 0.77624 0.85993 0.81498 1.90848 1.49585 1.14854 1.84417 1.26907 1.11985 1.02273 0.99120 1.22159 0.99176 1.02654 0.90504 1.22327 1.01100 0.86688 1.03267 1.72239 1.24224 1.26326 1.11939 1.81688 1.50695 1.05592 1.04525 1.23373 0.96596 1.01134 0.93621 1.23956 0.94649 0.97419 0.94523 1.68412 1.01793 1.33548 1.13253 1.22482 0.98689 0.94449 0.96609 1.19687 0.85028 0.84316 0.87792 1.90519 1.41044 1.43578 1.70738 1.41888 1.38480 1.32694 1.07448 1.19742 1.23302 1.18038 0.81559 0.87905 1.25261 0.96177 0.96007 1.00648 1.69620 1.26527 1.21770 1.36555 0.85804 0.78131 0.78124 0.82312 1.19229 1.20779 1.20800 1.23994 0.95423 1.02238 0.90938 0.90853 0.92086 0.92157 0.76622 0.80646 0.79832 0.87504 0.91140 0.88641 0.89472 0.92419 0.77572 0.91976 0.89314 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.44 37.16 0.35 -1.00 16 2 C 0.15 1.34 2.29 -67.93 -0.16 1.19 16 3 H 0.09 1.00 7.48 -51.93 -0.39 0.61 16 4 N -0.71 -5.59 4.94 -54.98 -0.27 -5.86 16 5 C 0.60 5.84 7.77 -12.66 -0.10 5.74 16 6 O -0.52 -6.92 16.62 5.26 0.09 -6.84 16 7 C -0.27 -2.14 6.76 -35.93 -0.24 -2.38 16 8 C -0.11 -0.76 10.40 -39.77 -0.41 -1.17 16 9 C 0.06 0.37 11.14 -18.75 -0.21 0.16 16 10 N -0.52 -4.19 11.29 21.63 0.24 -3.95 16 11 S 0.42 2.73 22.81 -107.50 -2.45 0.28 16 12 C -0.13 -1.23 3.35 -89.69 -0.30 -1.53 16 13 C 0.02 0.32 7.42 -2.64 -0.02 0.30 16 14 N -0.45 -7.09 5.65 -239.55 -1.35 -8.44 16 15 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16 16 C 0.45 10.67 7.83 -10.99 -0.09 10.58 16 17 O -0.58 -15.86 16.01 5.54 0.09 -15.77 16 18 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 19 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.00 0.04 7.38 -2.77 -0.02 0.02 16 28 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 2.22 7.98 -40.82 -0.33 1.90 16 32 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 38 H 0.06 0.92 7.39 -51.93 -0.38 0.54 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.73 7.88 -51.93 -0.41 0.33 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -35.13 375.25 -9.34 -44.47 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.52 Total: 8.94 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.46 Total: 4.00 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.71 Total: -56.91 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.45 Total: 0.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.13 -9.34 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734117657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.908 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds